Title of Invention

METHOD FOR THE PRODUCTION OF RECOMBINANT DNA-DERIVED TISSUE PLASMINOGEN ACTIVATOR AND A DNA MOLECULE

Abstract Method for the production of recombinant DNA-derived tissue plasminogen activator (tPA), a tPA variant, a Kringle 2 Serine protease molecule (K2S) or a K2S variant in prokaryotic cells, wherein said tPA, tPA variant, K2S molecule or K2S variant is secreted extracellularly as an active and correctly folded protein, characterized in that the prokaryotic cell contains and expresses a vector comprising the DNA coding for said tPA, tPA variant, K2S molecule or K2S variant operably linked to the DNA coding for the signal peptide OmpA.
Full Text FORM 2
THE PATENTS ACT 1970
[39 OF 1970]
&
THE PATENTS RULES, 2003
COMPLETE SPECIFICATION
[See Section 10; rule 13]
"METHOD FOR THE PRODUCTION OF RECOMBINANT DNA-DERIVED TISSUE PLASMINOGEN ACTIVATOR AND A DNA
MOLECULE"
BOEHRINGER INGELHEIM INTERNATIONAL GMBH, a German company, of Binger Strasse 173, D-55216 Ingelheim am Rhein, Germany,
The following specificatiori particularly describes the invention and the manner in which it is to be performed:

ORIGINAL
482/MUMNP/2003
GRANTED
6-6-2007


The present invention relates to an isolated DNA molecule
Background art
Tissue plasminogen activator (tPA) is a polypeptide containing 527 amino acid residues (27) with a molecular mass of 72 kDa. The molecule is divided into five structural domains. Nearby
the N-terminal region is a looped fmgerqpmain, which is followed by a growth facror domain.

Two similar domains, knngle 1 and kringje-2; are following. Both finger and kringle 2 domains
bind specifically to the fibrin clots thereby acceleratineg tPA protein activation of bound plasminogen. Downstream of kringle 2 is the.serine protease^with its catalytic site located at the C-tenninus. The serine protease is responsible for converting plasminogen to plasmin a reaction important in the homeostasis of fibrin formation and clot dissolution. The correct folding of tPA requires the correct pairing of 17 disulfide bridges-in the molecule (1). Clinically, tPA is a thrombolytic agent of choice for the treatment of acute myocardial infarction, pulmonary embolism, stroke, peripheral arterial occlusions, and other thromboembolic diseases. It has the advantage of causing no side effects on systemic haemorrhaging and fibrinogen depletion (7). Bowes melanoma cells were first used as a source in tPA production for therapeutic purposes (12). Since a consistent process with efficient production of highly purified protein in good yield is required for clinical use, the construction of full-length recombinant-fPA (r-tPA) progressed to mammalian cells. Chinese hamster ovary cells were transfected with the , tPA gene to synthesize the r-tPA (8, 22). The recombinant DNA derived product produced by a mammalian cell culture fermentation system is harvested and purified from the culture medium.

Attracted by simplicity and economy of production, a number of efforts in producing r-tPA from microorganisms, expecially bacteria, and more especially from Escherichia coli, were investigated (10, 13, 30). Regarding the low yield and the formation of inclusion bodies, which resulted in misfolding and in an inactive enzyme, numerous strategies have been proposed to overcome these problems.
Several deletion-mutant variants including kringle 2 plus serine protease (K2S) were considered. However, the enzymatic activity of the recombinant-K2S (r-K2S) was obtained only when refolding processes of purified inclusion bodies from cytoplasmic compartment were achieved (16,29). In order to avoid the cumbersome refolding processes, impurities of misfolded proteins, and periplasmic protein delivery, special bacterial expression systems were exploited (6, 31). Despite periplasmic expression of tPA, overexpression led to inactive aggregates, even in the relatively high oxidizing condition in the periplasm.
In the prior art, there are a few descriptions of methods for the preparation of recombmant K2S in E. coli. However, there is no disclosure of a method leading to a cost effective method for large scale production of biologically active K2S.
Obukowicz et al. (25) expressed and purified r-K2S from periplasmic space. The obvious disadvantage of this method was an extra periplasmic extraction step, which is not suitable for large scale production.
Saito et al. (29) disclose the cytoplasmic expression of r-K2S. The authors used an in vivo renaturation processes for the expressed r-K2S, which was purified from the cytoplasmic space of E. coli as inclusion body. Boehringer Mannheim use a similar cumbersome denaturing/refolding process involving the steps of cell digestion, solubilization under denaturing and reducing conditions and reactivation under oxidizing conditions in the presence of GSH/GSSG which is not cost effective (24) and requires mutation of the amino acid sequence with possibly antigenic potential.
In 1991, Waldenstrom et al. (34) constructed a vector (pEZZK2P) for the secretion of kringle 2 plus serine protease domain to E. coli culture supernatant. Hydroxylamine was used to remove the ZZ fusion peptide from IgG-Sepharose purified fraction. The cleavage agent hydroxylamine required modification of the cleavage sites of kringle 2 plus serine protease (Ash177 → Ser and Asn184 → Gin) thus to protect it from hydroxylamine digestion. However, the resulting non-native, not properly folded K2S molecule is not suitable for therapeutic purposes. No enzymatic
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activity regarding fibrin binding/protease activity was disclosed. The unusual sequence may even activate the human immune system.
The problem underlying the present invention was thus to provide a commercially applicable method for large scale production of tPA molecules and derivatives therof, e.g. K2S, wherein the K2S molecule is secreted in its biologically active form into the culture supernatant.

Description of the invention
The problem was solved within the scope of the claims and specification of the present invention. The use of the singular or plural in the claims or specification is in no way intended to be limiting and also includes the other form.
The invention relates to a method for the production of a recombinant DNA-derived tissue plasminogen activator (tPA), a tPA variant, a Kringle 2 Serine protease molecule (K2S) or a K2S variant in prokaryotic cells, wherein said tPA, tPA variant, K2S molecule or K2S variant is secreted extracellularly as an active and correctly folded protein, characterized in that the prokaryotic cell contains and expresses a vector comprising the DNA coding for said tPA, tPA variant, K2S molecule or K2S variant operably linked to the DNA coding for the signal peptide OmpA or a functional derivative thereof.


Surprisingly, the use of the signal peptide OmpA alone and/ or in combination with the N-teiminal amino acids SEGNJSEQ ID NO:9) / SEGNSD (SEQ ID NO:10) translocate the recombinant DNA-derived tPA, tPA variant, K2S molecule or K2S variant to the outer surface and facilitates the release of the functional and active molecule into the culture medium to a greater extent than any other method in the prior art. Before crossing the outer membrane, the recombinant DNA-derived protein is correctly folded according to the method of the present invention. The signal peptide is cleaved off to produce a mature molecule. Surprisingly, the efficiency of signal peptide removal is very high and leads to correct folding of the recombinant DNA-derived protein.
Said signal peptide OmpA interacts with SecE and is delivered across the inner membrane by. energy generated by SecA, which binds to Sec components (SecE-SecY). SecY forms a secretion pore to dispatch the recombinant DNA-derived protein according to the invention. The space between the outer membrane and inner membrane of Gram-negative bacteria, periplasm, has higher oxidative condition in comparison to the cytoplasmic space. This supports the formation

of disulfide bonds and properly folding of the recombinant DNA-derived protein (e.g. K2S) in the periplasm to yield an active molecule. According to the present invention, the signal peptide will be cleaved off to produce a mature molecule. The complex of GspD secretin and GspS lipoprotein on the outer membrane serves as gate channel for secreting the recombinant DNA- derived protein according to the invention to the extracellular medium. This secretion process requires energy, which is generated in cytoplasm by GspE nucleotide-binding protein then transferred to the inner membrane protein (Gsp G-J, F and K-N). GspC transfers the energy to GspD by forming a cross-linker between a set of inner membrane protein (Gsp G-J, F and K-N) and GspD. Before crossing the outer membrane successfully, the recombinant DNA-derived
protein is correctly folded.
Operably linked according to the invention means that the DNA encoding the tPA, tPA variant, K2S molecule or K2S variant (preferably comprising the nucleic acid encoding SEGN or SEGNSD at its N-terrninal portion) is cloned in close proximity to the OmpA DNA into the vector in order to achieve expression of the OmpA-tPA, tPA variant, K2S molecule or K2S
variant-fusion protein and to direct secretion outside the prokaryotic host cell. Typically, the majority of the tPA, tPA variant, K2S molecule or K2S variant is secreted and can then be purified by appropriate methods such as ammonium sulfate precipitation and/or affinity chromatography and further purification steps. The invention also includes the use of inducers such as IPTG or IPTG in combination with glycerol, the improvement of the incubation
condition and harvesting period to maximize the amount of active protein.
In a preferred embodiment, said DNA encoding the OmpA signal peptide may be fused to a short peptide characterized by the amino acid sequence SEGN or SBGNSDor the coding nucleic acid
sequence_TCTGAGGGAAAC (SEP ID NO:20) or TCTGAGGGAAACAGTGAC (SEQ ID NO:_l) and located in the Nterminal portion or at the_Nterminal.pxation-of-the.tPA, -tPA variant,
K2S molecule or K2S variant Thus, preferably, said fusion.protein.comprises OmpA-SEGNSD-tPA, -tPA-variant, -K2S-molecule or -K2S-yariant. Even more preferred, said amino acids characterized by SEGN or SEGNSD may be carry a point mutation or may be substituted by a non-natural amino acid. Even more preferred, there may be an amino acid or non-arnino acid 1 spacer between OmpA and SEGN or SEGNSD and the tPA, tPA variant, K2S molecule or K2S
variant.
Thus, in a preferred method according to the invention said the prokaryotic cell contains and expresses a vector comprising the DNA coding for said tPA, tPA variant, K2S molecule or K2S
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variant operably linked to the DNA coding for the signal peptide OmpA which is operably linked
to the nucleic acid molecule defined by the sequence TCTGAGGGAAACAGTGAC or a
functional derivative thereof.
The method according to the invention comprises prokaryotic host cells such as, but not limited to Escherichia coli (E. coli), Bacillus subtilis, Streptomyces, Pseudomonas, e.g. Pseudomonas
putida, Proteus mirabilis, Saccharomyces, Pichia or Staphylococcus, e.g. Staphylococcus
carnosus. Preferably said host cells according to the invention are Gram-negative bacteria.
Preferably, a method according to the invention is also characterised in that the prokaryotic cell
is E. coli. Suitable strains include, but are not limited to E. coli XL-1 blue, BL21(DE3), JM109, DH series, TOP10 and HB101.
Preferably, a method according to the invention is also characterised in that the following steps
are carried out:
a) the DNA encoding the tPA, tPA variant, K2S molecule or K2S variant is amplified by PCR;
b) the PCR product is purified;
c) said PCR product is inserted into a vector comprising the DNA coding for OmpA signal peptide and the DNA coding for gpIII in such a way that said PCR product is operably linked upstream to the DNA coding for the OmpA signal sequence and linked downstream to the DNA coding for gpIII of said vector;
d) that a stop codon is inserted between said tPA, tPA variant, K2S molecule or K2S variant and gpHI;
e) said vector is expressed by the prokaryotic cell
f) the tPA, tPA variant, K2S molecule or K2S variant is purified.
For step a) according to the invention the choice / design of the primers is important to clone the DNA in the right location and direction of the expression vector (see example 1), Thus, the
primers as exemplified in example 1 and figure 4 comprise an important aspect of the present invention. With gp III of step c) gene protein III is meant which is present mainly in phagemid vectors. The stop codon is inserted to avoid transcription of gp III thus eventually leading to secretion of the tPA, tPA variant, K2S molecule or K2S variant of interest. Any suitable method for insertion of the stop codon may be employed such as site-directed mutagenesis (e.g. Weiner
MP, Costa GL (1994) PCR Methods Appl 4(3):S131-136; Weiner MP, Costa GL, Schoettlin W, Cline J, Mathur E, Bauer JC (1994) Gene 151(1-2): 119-123; see also example 1).

Any vector may be used in the method according to the invention, preferably said vector is a phagemid vector (see below).
Preferably, a method according to the invention is also characterised in that the tPA, tPA variant,
K2S molecule or K2S variant is selected from human tissue plasminogen activator (tPA, figure
16) or a fragment, a functional variant, an allelic variant, a subunit, a chemical derivative, a
fusion protein or a glycosylation variant therof. Such fragments, allelic variants, functional
variants, variants based on the degenerative nucleic acid code, fusion proteins with an tPA
protein according to the invention, chemical derivatives or a glycosylation variant of the tPA
proteins according to the invention may include one, several or all of the following domains or
subunits or variants thereof:
1. Finger domain (4-50)
2. Growth factor domain (50-87)
3. Kringle 1 domain (87-176)
4. Kringle 2 domain (176-262)
5. Protease domain (276-527) -
The numbering/naming of the domains is according to Genbank accession number GI137119 or Nature 301 (5897), 214-221 (1983).
More preferably, a method according to the invention is also characterised in that the tPA, tPA variant, K2S molecule or K2S variant is selected from the Kringle 2 (4.) plus Serine protease (5.)
K2S variant of human tissue plasminogen activator or a fragment, a functional variant, an allelic variant, a subunit, a chemical derivative, a fusion protein or a glycosylation variant therof. More preferably, a method according to the invention is also characterised in that the vector is a phagemid vector comprising the DNA coding for OmpA signal peptide and the DNA coding for gpm.
More preferably, a method according to the invention is also characterised in that the vector is the pComb3HSS phagemid (see also example 1).
More preferably, a method according to the invention is also characterised in that the DNA sequence comprises or consists of the following DNA sequence encoding OmpA and K2S or a functional variant thereof or a variant due to the degenerate nucleotide code:



ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGGTTTCGCTACCGTGGCC CAGGCGGCCTCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCG TGGCACGCACAGCCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGAT CCTGATAGGCAAGGTTTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGG

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GCAAACATAATTACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTG CTGAAGAACCGCAGGCTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGC GGCCTGAGACAGTACAGCCAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGA CATCGCCTCCCACCCCTGGCAGGCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGG AGAGCGGTTCCTGTGCGGGGGCATACTCATCAGCTCCTGCTGGATTCTCTCTGCCGC CCACTGCTTCCAGGAGAGGTTTCCGCCCCACCACCTGACGGTGATCTTGGGCAGAAC ATACCGGGTGGTCCCTGGCGAGGAGGAGCAGAAATTTGAAGTCGAAAAATACATTG TCCATAAGGAATTCGATGATGACACTTACGACAATGACATTGCGCTGCTGCAGCTGA AATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGCACTGTGTGCCTTC CCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCCGGCTACGGC AAGCATGAGGCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCATGTCAGA CTGTACCCATCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACCGAC AACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGA CGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGA CTTTGGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGT GTGTACACAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCG (SEQ ID N0:2) More preferably, a method according to the invention is also characterised in that the DNA
Sequence of OmpA comprises or consists of the following sequence or a functional variant
thereof or a variant due to the degenerate nucleotide code:
ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGGTTTCGCTACCGTGGCC
CAGGCGGCC (SEQ ID NO:3).
Said DNA encodes the following amino acid sequence of OmpA. OmpA thus comprises or
consists of a protein characterized by the following amino acid sequence or a fragment, a functional variant, an allelic variant, a subunit, a chemical derivative or a glycosylation variant therof as part of the invention: MKKTAIAIAVALAGFATVAQAA (SEQ ID NO:21).
The untranslated region may contain a regulatory element, such as e.g. a transcription initiation unit (promoter) or enhancer. Said promoter may, for example, be a constitutive, inducible or development-controlled promoter. Preferably, without ruling out other known promoters, the constitutive promoters of the human Cytomegalovirus (CMV) and Rous sarcoma virus (RSV), as well as the Simian virus 40 (SV40) and Herpes simplex promoter. Inducible promoters according to the invention comprise antibiotic-resistant promoters, heat-shock promoters/ hormone-inducible „Mammary tumour virus promoter" and the metallothioneine promoter. Preferred promotors include T3 promotor, T7 promotor, Lac/aral and Ltet0-1. More preferably, a method according to the invention is also characterised in that the DNA of the tPA, tPA variant, K2S molecule or K2S variant is preceeded by a lac promotor and/or a ribosomal binding site such as the Shine-Dalgarno sequence (see also example).

More preferably, a method according to the invention is also characterised in that the DNA coding for the tPA, tPA variant, K2S molecule or K2S variant is selected from the group of DNA molecules coding for at least 90% of the.amino acids 87 - 527, 174 - 527, 180 - 527 or 220 -527 of the human tissue plasminogen activator protein. More preferably, a method according to the invention is also characterised in that the DNA Sequence of K2S comprises or consists of the following sequence:
TCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCACGCA CAGCCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGG CAAGGTTTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATA
ATTACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAAC CGCAGGCTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGA CAGTACAGCCAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCC CACCCCTGGCAGGCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTT CCTGTGCGGGGGCATACTCATCAGCTCCTGCTGGATTCTCTCTGCCGCCCACTGCTTC
CAGGAGAGGTTTCCGCCCCACCACCTGACGGTGATCTTGGGCAGAACATACCGGGT GGTCCCTGGCGAGGAGGAGCAGAAATTTGAAGTCGAAAAATACATTGTCCATAAGG AATTCGATGATGACACTTACGACAATGACATTGCGCTGCTGCAGCTGAAATCGGATT CGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGCACTGTGTGCCTTCCCCCGGCGG ACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCCGGCTACGGCAAGCATGAG
GCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCATGTCAGACTGTACCCA TCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACCGACAACATGCTG TGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGACGCCTGCCA GGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGACTTTGGTGGG CATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGTGTGTACACAA
AGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCGTGA (SEQ ID NO:4).
The present invention also relates to variants of the before-mentioned nucleic acid molecules due to the degenerate code or to fragments therof, nucleic acids which hybridize to said nucleic acids under stringent conditions, allelic or functional variants. The invention also relates to nucleic acids comprising said K2S nucleic acid fused to the nucleic acid encoding another protein molecule.
Stringent conditions as understood by the skilled person are conditions which select for more than 85 %, preferred more than 90 % homology (Sambrook et al. 1989; Molecular Cloning: A


Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York). The hybridisation will be carried out e.g. in 6x SSC/ 5x Denhardf s solution/ 0,1 % SDS (SDS: sodium dodecylsulfate) at 65 °C. The degree of stringency is decided in the washing step. Thus, for example for a selection of DNA-sequences with approx. 85 % or more homology, the conditions 0,2 x SSC/ 0,01 % SDS/ 65 °C and for a selection of DNA-sequences of approx. 90 % or more homology the conditions 0,lx SSC/ 0,01 % SDS/ 65 °C are suitable. The composition of said reagents is described in Sambrook et al. (1989, supra).
Another important part of the present invention is a variant of human tissue plasminogen activator comprising of or consisting of the Kringle 2 (4.) plus Serine protease (5.) (abbreviated K2S) protein or a variant or a fragment, a functional variant, an allelic variant, a subunit, a chemical derivative, a fusion protein or a glycosylation variant therof.
The numbering/naming of the domains is according to Genbank accession number GI137119 or
Nature 301 (5897), 214-221 (1983), wherein the Kringle 2 domain extends from amino acid 176-
262 and the protease domain from 276-527. Thus, according to the invention, a preferred K2S
molecule may include amino acids 176-527 including the amino acids between Kringle 2 and the
protease (amino acids 263 to 275; exemplified in fig. (structure A)). A K2S molecule according
to the invention comprises the rmnimal part of the Kringle 2 domain and the protease domain
still retaining protease activity and fibrin binding activity (measured as exemplified in the
description/example). Said K2S molecule according to the invention comprises the amino acids
SEGN or SEGNSD in its N-terminal portion (see infra). A preferred K2S molecule does not
include amino acids 1 to 3 or 1 to 5 of the tPA molecule. Preferably, a K2S molecule according
to the invention has the amino acid Asn at positions 177 and 184, i.e. it does not require the
modifications as disclosed in Waldenstrom for improved producibility with a method according
to the invention. Thus, a preferred K2S molecule according to the invention has the native amino
acid sequence (no mutation) as opposed to the molecules known from the prior art. Most
preferred, said K2S molecule according to the invention is a molecule characterized by the native
amino acid sequence or parts thereof, does neither have amino acids 1 to 3 nor 1 to 5 of tPA and
comprises N-terminally the amino acids SEGN or SEGNSD for improved producibility and/or
correct folding of the molecule.
It is essential that the K2S protein according to the invention comprises in its N-termmal portion
a peptide characterized by the amino acid sequence SEGN which advantageously allows
commercial production with a method as described supra leading to a correctly folded, secreted

K2S protein. Said 4 amino acids characterized by SEGN may have one or several ammo acids more N-terminal, however said amino acids have to be located in the N-teiminal portion as opposed to the C-terminal portion. Most preferably, said amino acids are located at the N-terminal portion. Preferably, the amino acids characterized by SEGN may be carry a point mutation or may be substituted by a non-natural amino acid.
Thus, in another important embodiment the invention relates to a K2S protein characterized in that it comprises the amino acids defined by'the sequence SEGN or a variant or a fragment, a functional variant, an allelic variant, a subunit, a chemical derivative, a fusion protein or a glycosylation variant therof.
Such fragments are exemplified e.g. in figure 10 (Structure B-l) and figure 11 (Structure B-2) extending from amino acids 193-527. Structure B-l has the native amino acid Cys in position 261, wherein in B-2 the amino acid is substituted by Ser. Further fragments according to the invention comprising the amino acids 220-527 (fig. 14, structure C) or comprising the amino acids 260-527 (fig. 15, structure D) may be modified according to the invention by addition of the amino acids SEGN and/or substitution of Cys-261 by Ser. The artisan can determine the minimal length of a K2S molecule according to the invention in order to retain its biological function and generate a K2S molecule with improved producibility and/or correct folding by adding the amino acids SEGN in the N-terminal portion. Thus, another preferred embodiment is said minimal K2S molecule with SEGN at its N-terminal portion.
In another important embodiment the invention relates to a K2S protein characterized in that it comprises the amino acids defined by the sequence SEGNSD or a variant or a fragment, a functional variant, an allelic variant, a subunit, a chemical derivative, a fusion protein or a glycosylation variant therof. Such fragments are exemplified e.g. in figure 12 (Structure B-3) and figure 13 (Structure B-4) extending from amino acids 191-527. Structure B-3 has the native amino acid Cys in position 261, wherein in B-4 the amino acid is substituted by Ser. Further fragments according to the invention comprising the amino acids 220-527 (fig. 14, structure C) or comprising the arnino acids 260-527 (fig. 15, structure D) may be modified according to the invention by addition of the amino acids SEGNSD and/or substitution of Cys-261 by Ser. The artisan can determine the minimal length of a K2S molecule according to the invention in order to retain its biological function and generate a K2S molecule with improved producibility and/or correct folding by adding the amino acids SEGNSD in the N-terminal portion. Thus, another preferred embodiment is said minimal K2S molecule with SEGNSD at its N-terminal portion.

Another more preferred embodiment of the present invention relates to a K2S protein comprising
a protein characterized by the following amino acid sequence or a variant or a fragment, a
functional variant, an allelic variant, a sub-unit, a chemical derivative or a glycosylation variant
therof:
SEGNSDCYFGNGSAYRGTHSLTESGASCLPWNSMILIGKVYTAQNPSAQALGLGKHNY
CRNPDGDAKPWCHVLKNRRLTWEYCDVPSCSTCGLRQYSQPQFRIKGGLFADIASHPW
QAAJFAKHRRSPGEPJFLCGGmSSCWILSAAHCFQERPPPHHLTVE.GRTYRVVPGEEEQ
KFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC
ELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQA
NLHDACQGDSGGPLVCLNDGRMTLVGnSWGLGCGQKDVPGVYTKVTNYLDWIRDNM
RP*(SEQID NO:ll).
According to the invention, * means STOP (i.e. encoded by a stop codon). This K2S molecule is
exemplified in figure 8.
One variant of the K2S molecule according to the invention relates to a fusion protein of K2S
being fused to another protein molecule.
Another more preferred embodiment of the present invention relates to a K2S protein consisting
of a protein characterized by the following amino acid sequence:
SEGNSDCYFGNGSAYRGTHSLTESGASCLPWNSMILIGKVYTAQNPSAQALGLGKHNY
CRNPDGDAKPWCHVLKNRRLTWEYCDVPSCSTCGLRQYSQPQFRIKGGLFADIASHPW
QAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVrLGRTYRVVPGEEEQ
KFEVEKYIVHKFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC
ELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQA
NLHDACQGDSGGPLVCLNDGRMTLVGHSWGLGCGQKDWGVYTKVTNYLDWIRDNM
RP*(SEQ ID NO:ll).
Said K2S molecules may be encoded by a DNA molecule as described supra.
Another important aspect of the invention relates to a DNA molecule characterized in that it is
coding for:
a) the OmpA protein or a functional derivative therof operably linked to
b) a DNA molecule coding for a polypeptide containing the kringle 2 domain and the serine protease domain of tissue plasminogen activator protein.


More preferably, a DNA molecule according to the invention is also characterised in that the
DNA sequence comprises or consists of the following DNA sequence encoding OmpA and K2S
or a functional variant thereof or a variant due to the degenerate nucleotide code:
ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGGTTTCGCTACCGTGGCC CAGGCGGCCTCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCG TGGCACGCACAGCCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGAT CCTGATAGGCAAGGTITACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGG GCAAACATAATTACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTG CTGAAGAACCGCAGGCTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGC GGCCTGAGACAGTACAGCCAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGA CATCGCCTCCCACCCCTGGCAGGCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGG AGAGCGGTTCCTGTGCGGGGGCATACTCATCAGCTCCTGCTGGATTCTCTCTGCCGC CCACTGCTTCCAGGAGAGGTTTCCGCCCCACCACCTGACGGTGATCTTGGGCAGAAC ATACCGGGTGGTCCCTGGCGAGGAGGAGCAGAAATTTGAAGTCGAAAAATACATTG TCCATAAGGAATTCGATGATGACACTTACGACAATGACATTGCGCTGCTGCAGCTGA AATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGCACTGTGTGCCTTC CCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCCGGCTACGGC AAGCATGAGGCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTGATGTCAGA CTGTACCCATCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACCGAC AACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGA CGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGA CTTTGGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGT GTGTACACAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCG (SEQ ID No:2) Said DNA molecule encodes the following fusion protein of OmpA and K2S. Said fusion protein
of OmpA and K2S characterised in that it comprises or consists of a protein characterized by the
following amino acid sequence or a fragment, a functional variant, an allelic variant, a subunit, a
chemical derivative or a glycosylation variant therof forms an important part of the present
invention:
MKKTAIAIAVALAGFATVAQAASEGNSDCYFGNGSAYRGTHSLTESGASCLPWNSMrLI GKVYTAQNPSAQALGLGKHNYCRNPDGDAKPWCHVLKNRRLTWEYCDVPSCSTCGLR QYSQPQFIOKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF PPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTyDNDIALLQLKSDSSRCAQES SVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVPvLYPSSRCTSQHLL
NRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGnSWGLGCGQ KDVPGVYTKVTNYLDWIRDNMRPG (SEQ ID NO:8)
Another preferred aspect of the invention relates to a DNA molecule according to the invention, characterized in that said DNA sequence b) is coding for at least 90% of the amino acids 87 -
13


527 of the human tissue plasminogen activator protein (numbering used herein as GI137119 or
Nature 301 (5897), 214-221 (1983).
Another preferred aspect of the invention relates to a DNA molecule according to the invention,
characterized in that said DNA sequence b) is coding for at least 90% of the amino acids 174 - 527 of the human tissue plasminogen activator protein.
Another preferred aspect of the invention relates to a DNA molecule according to the invention,
characterized in that said DNA sequence b) is coding for at least 90% of the amino acids 180 —
527 of the human tissue plasminogen activator protein.
Another preferred aspect of the invention relates to a DNA molecule according to the invention, characterized in that said DNA sequence b) is coding for at least 90% of the amino acids 220 -
527 of the human tissue plasminogen activator protein.
Another preferred aspect of the invention relates to a DNA molecule according to the invention,
characterized in that said DNA sequence a) is hybridizing under stringent conditions to the
following sequence: ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGGTTTCGCTACCGTGGCC CAGGCGGCC (SEQ ID NO:3).
Another preferred aspect of the invention relates to a DNA molecule according to the invention, characterized in that said DNA sequence a) consists of the following sequence: ATGAAAAAGACAGCTATCGCGATTGGAGTGGCACTGGCTGGTTTCGCTACCGTGGCC CAGGCGGCC (SEQ ID NO:3).
Another preferred aspect of the invention relates to a DNA molecule according to the invention, characterized in that said DNA sequence b) is hybridizing under stringent conditions to the following sequence:
TCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCACGCA CAGCCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGG CAAGGTTTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATA ATTACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAAC CGCAGGCTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGA CAGTACAGCCAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCC CACCCCTGGCAGGCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTT CCTGTGCGGGGGCATACTCATCAGCTCCTGCTGGATTCTCTCTGCCGCCCACTGCTTC CAGGAGAGGTTTCCGCCCCACCACCTGACGGTGATCTTGGGCAGAACATACCGGGT
14


GGTCCCTGGCGAGGAGGAGCAGAAATTTGAAGTCGAAAAATACATTGTCCATAAGG
AATTCGATGATGACACTTACGACAATGACATTGCGCTGCTGCAGCTGAAATCGGATT
CGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGCACTGTGTGCCTTCCCCCGGCGG
ACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCCGGCTACGGCAAGCATGAG
GCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCATGTCAGACTGTACCCA
TCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACCGACAACATGCTG
TGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGACGCCTGCCA
GGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGACTTTGGTGGG
CATCATCAGCTGGGGGCTGGGCTGTGGACAGAAGGATGTCCCGGGTGTGTACACAA
AGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCGTGA (SEQ ID N0:4).
Another preferred aspect of the invention relates to a DNA molecule according to the invention,
characterized in that said DNA sequence b) consists of the following sequence:
TCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCACGCA
CAGCCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGG
CAAGGTTTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATA
ATTACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAAC
CGCAGGCTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGA
CAGTACAGCCAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCC
CACCCCTGGCAGGCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTT
CCTGTGCGGGGGCATACTCATCAGCTCCTGCTGGATTCTCTCTGCCGCCCACTGCTTC
CAGGAGAGGTTTCCGCCCCACCACCTGACGGTGATCTTGGGCAGAACATACCGGGT
GGTCCCTGGCGAGGAGGAGCAGAAATTTGAAGTCGAAAAATACATTGTCCATAAGG
AATTCGATGATGACACTTACGACAATGACATTGCGCTGCTGCAGCTGAAATCGGATT
CGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGCACTGTGTGCCTTCCCCCGGCGG
ACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCCGGCTACGGCAAGCATGAG
GCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCATGTCAGACTGTACCCA
TCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACCGACAACATGCTG
TGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGACGCCTGCCA
GGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGACTTTGGTGGG
CATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGTGTGTACACAA
AGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCGTGA (SEQ ID NO:4).
15

Another preferred embodiment of the invention relates to a vector containing a DNA sequence
according to the invention.
Another preferred embodiment of the invention relates to a vector according,to the invention,
wherein said DNA sequence is preceeded by a lac promoter and a ribosomal binding site.
Suitable vectors according to the invention include, but are not limited to viral vectors such as
e.g. Vaccinia, Semliki-Forest-Virus and Adenovirus, phagemid vectors and the like. Preferred are
vectors which can be advantageously used in E. coli, but also in any other prokaryotic host such
as pPROTetE, pPROLar.A, members of the pBAD family, pSE family, pQE family and pCAL.
Another preferred embodiment of the invention relates to the vector pComb3HSS containing a
DNA according to the invention, wherein the expression of the gp III protein is suppressed or
inhibited by deleting the DNA molecule encoding said gp III protein or by a stop codon between
the gene coding for a a polypeptide containing the kringle 2 domain and the serine protease
domain of tissue plasminogen activator protein and the protein III gene.
Another important aspect of the present invention relates to a prokaryotic host cell comprising a
DNA molecule according to the invention.
Another important aspect of the present invention relates to a prokaryotic host cell comprising a
yectoxjaccprding to the invention.
Another important aspect of the present invention relates to an E. coli host cell comprising a
DNA molecule according to the invention.
Another important aspect of the present invention relates to a E. coli host cell comprising a
vector according to the invention.
Yet another important aspect of the present invention is the use of a DNA molecule according to
the invention or of a vector according to the invention or a host cell according to the invention in
a method for the production of a polypeptide having the activity of tissue plasminogen activator.
Yet another important aspect of the present invention is the use according the invention as
described above, wherein said method is a method according to the invention.
Another very important aspect is a pharmaceutical composition comprising' a substance
obtainable by a method according to the invention and pharmaceutically acceptable excipients
and carriers. An example for said substance is the K2S molecule described supra. The term
"pharmaceutically acceptable carrier" as used herein refers to conventional pharmaceutic
excipients or additives used in the pharmaceutical maniifacturing art. Such physiologically
acceptable compounds include, for example, carbohydrates, such as glucose, sucrose or dextrans,


antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins or other stabilizers or excipients (see also e.g. Remington's Pharmaceutical Sciences (1990, 18th ed. Mack Publ., Easton.)). Said pharmaceutical composition according to the invention can be advantageously administered intravenously as a bolus, e.g. as a single bolus for 5 to 10 seconds intravenously.
The invention further relates to the use of substances obtainable by a method according to the invention in the manufacture of a medicament in the treatment of stroke, cardiac infarction, acute myocardial infarction, pulmonary embolism, any artery occlusion such as coronary artery occlusion, intracranial artery occlusion (e.g. arteries supplying the brain), peripherally occluded arteries, deep vein thrombosis or related diseases associated with unwanted blood clotting.
The following example is intended to aid the understanding of the invention and should in no way be regarded as limiting the scope of the invention.
Example 1

MATERIALS AND METHODS
Primer design. In order to amplify a specific part of tPA gene, a pair of primers SK2/174 [5'
GAGGAGGAGGTGGCCCAGGCGGCCTCTGAGGGAAACAGTGAC 3' ] (SEQ ID NO:22)
and ASSP
[5' GAGGAGGAGCTGGCCGGCCTGGCCCGGTCGCATGTTGTCACG 3' ] (SEQ ID NO:23) were synthesized (Life Technologies, Grand Island, NY). These primers were designed based on the human tPA gene retrieved from NCBI databases (gl37119), They were synthesized with Sfi I end cloning sites (underlined) in such a way that the reading frame from the ATG of the gpIII gene in phagemid vector, pComb3HSS, will be maintained throughout the inserted
sequence.
Another primer set for site-directed mutagenesis was designed to anneal at the sequence situated between K2S gene and gene m in pComb3H-K2S. The sequence of primers with mutation bases (underlined) for generating a new stop codon were MSTPA [5' ACATGCGACCGTGACAGGCCGGCCAG 3'] (SEQ ID NO:24) and MASTPA
[5' CTGGCCGGCCTGTCACGGTCGCATGT 3'] (SEQ ID NO:25).



Amplification of K2S gene by PCR One µg SK2/174 and ASSP primers together with 50 ng of p51'-3 template (obtained from Dr. Hiroshi Sasaki, Fujisawa Pharmaceutical, Japan) were suspended in 100 pi PCR mixture. An amount of 2.5 U Taq polymerase (Roche Molecular Biochemicals, Indianapolis, IN) was finally added to the solution. The titrated amplification condition was initiated with jump start at 85°C for 4 min, then denaturation at 95°C for 50 sec, annealing at 42°C for 50 sec, extension at 72°C for 1.5 min. Thirty five rounds were repeatedly performed. The mixture was further incubated at 72°C for 10 min. The amplified product of 1110 bp was subsequently purified by QIAquick PCR Purification Kit (QIAGEN, Hilden, Germany). The correctness of purified product was confirmed by restriction enzymes.
Construction of phagemid expressing K2S. The purified PCR product of K2S and pComb3HSS phagemid (kindly provided by Dr. Carlos F. Barbas, Seripps Institute, USA) were digested with Sfi I (Roche Molecular Biochemicals, Indianapolis, IN) to prepare specific cohesive cloning sites. Four µg of the purified PCR product was digested with 60 U of Sfi I at 50°C for 18 h. For pComb3HSS, 20 \ig of phagemid vectors were treated with 100 U of Sfi I. Digested products of purified PCR product of K2S and pComb3HSS (-3300 bp) were subsequently gel-purified by the QJAquick Gel Extraction Kit (QIAGEN, Hilden, Germany). T4 ligase (Roche Molecular Biochemicals, Indianapolis, IN) of 5 U were introduced to the mixture of 0.7 jig of purified Sfi I-digested pComb3HSS and 0.9 µg of purified Sfi I-digested PCR product. Ligation reaction was incubated at 30°C for 18 h. The newly constructed phagemid was named pComb3H-K2S.
Transformation of E. coli XL-1 Blue, Two hundred µl of CaCl2 competent E. coli XL-1 Blue (Stratagene, La Jolla, CA) were transformed with 70 ng of ligated or mutated product. The transformed cells were propagated by spreading on LB agar containing 100 µg/ml ampicillin and 10 µg/ml tetracycline (Sigma, Saint Louis, MO). After cultivation at 37°C for 18 h several antibiotic resistant colonies were selected for plasmid minipreps by using the alkaline lysis method. Each purified plasmid was subjected to Sfi I restriction site analysis. A transfonnant harboring plasmid with the correct Sfi I restriction site(s) was subsequently propagated for 18 h at 37°C in 100 ml LB broth with ampicillin 100 jig/ml and tetracycline 10 µg/ml. A plasmid maxiprep was performed using the QIAGEN Plasmid Maxi Kit (QIAGEN, Hilden, Germany). The purified plasmid was reexamined for specific restriction sites by Sfi I and sequenced by

AmpliTaq DNA Polymerase Terminator Cycle Sequencing Kit (The Perkin-Elmer Corporation, Forster City,CA).
Site-directed mutagenesis of pComb3H-K2S. 10 ng of pComb3H-K2S template were mixed with 125 ng of MSTPA and MASTPA primers. PfuTurbo DNA polymerase (Stratagene, LA Jolla, CA) of 2.5 U was added to the mixture for cycle amplification. The reaction started with one round of 95°C for 30 sec. Then it was followed by 16 rounds consisting of 95°C for 30 sec, 55°C for 1 min, and 68°C for 9 min. The reaction tube was subsequently placed on ice for 2 min. In order to destroy the template strands, 10 U of Dpn I restriction enzyme (Stratagene, LA Jolla, CA) were added to the amplification reaction and incubated for 1 h at 37°C. This synthesized product (MpComb3H-K2S) was further used to transform E. coli XL-1 Blue.
Preparation of phage-display recombinant-K2S. After pComb3H-K2S was transformed to XL-1 Blue, the phage display technique was performed. A clone of pComb3H-K2S transformed E. coli XL-1 Blue was propagated in 10 ml super broth containing ampicillin 100 µg/ml and tetracycline 10 µg/ml at 37°C until the O.D. [600 urn] of 1.5 was reached. The bacterial culture was subsequently propagated in 100 ml of the same medium and culture for 2 h. An amount of 1012 pfu of VCSM13 helper phage (Stratagene, La Jolla, CA) was used to infect the transformed E. coli XL-1 Blue. After 3 h incubation, kanamycin at a 'final concentration of 70 g/ml final concentration was added to culture. The culture was left shaking (200 RPM) for 18 h at 37°C. Bacteriophages which harbored K2S on gp3 (K2S-) were then harvested by adding 4% w/v PEG MW 8000 (Sigma, Saint Louis, MO) and 3% w/v NaCl. Finally, the harvested phage was resuspended in 2 ml PBS pH 7.4. The phage number was determined by infecting E. coli XL-1 Blue. The colony-forming unit per milliliter (cfu/ml) was calculated as described previously (21).
Expression of recombinant-K2S in shaker flasks. MpComb3H-K2S transformed E. coli XL-1 Blue was cultivated in 100 ml super broth (3% w/v tryptone, 2% w/v yeast extract and 1% w/v MOPS) at pH 7.0 in the presence of ampicillin (100 .g/ml) at 37°C until an O.D. [600 nm] of 0.8 was reached. Subsequently, the protein synthesis was induced by 1 mM of IPTG (Promega, Madison, WI). The bacteria were further cultured shaking (200 RPM) for 6 h at 30°C. The culture supernatant was collected and precipitated with 55% saturated ammonium sulfate (32).

WO 02/40650 PCT/EP01/12857
The precipitate was reconstituted with PBS, pH 7.2, and dialysed in the same buffer solution at 4°C for 18 h. Periplasmic proteins from bacterial cells were extracted by using a chloroform shock as previously described by Ames et al. (2).
Immunoassay quantification of recombinant-K2S. In order to detect r-K2S, solid phase was
coated with monoclonal anti-kringle 2 domain (16/B) (generously provided by Dr. Ute
'Zacharias, Central Institute of Molecular Biology, Berlin-Buch, Germany). The standard ELISA
washing and blocking processes were preformed. Fifty JJ,1 of 1011 cfu/ml of K2S- or secretory r-
K2S were added into each anti-kringle 2 coated well. Antigen-antibody detection was carried out
as follows. Either sheep anti-M13 conjugated HRP (Pharmacia Biotech, Uppsala, Sweden) or sheep anti-tPA conjugated HRP (Cedarlane, Ontario, Canada), was added to each reaction well after the washing step. The substrate TMB was subjected to every well and the reaction was finally ceased with H2S04 solution after 30 min incubation. The standard melanoma tPA 86/670 (National Institute -for Biological Standards and Control, Hertfordshine, UK) was used as
positive control.
Amidolytic activity assay. A test kit for the detection of tPA amidolytic activity was purchased from Chromogenix (Molndal, Sweden). The substrate mixture containing plasminogen and S-2251 was used to determine serine protease enzymatic activity. The dilution of 10"2 of each ammonium precipitated sample was assayed with and without stimulator, human fibrinogen fragments. The assay procedure was according to the COASET t-PA manual.
SDS-PAGE and irnmunoblotting. The dialysed precipitate-product from culture supernatant was further concentrated 10 folds with centricon 10 (AMICON , Beverly, MA). The concentrated sample was subjected to protein separation by SDS-PAGE, 15% resolving gel, in the reducing buffer followed by electroblotting to nitrocellulose. The nitrocellulose was then blocked with 4% skimmed milk for 2 hr. In order fo detect r-K2S, a proper dilution of sheep anti-tPA conjugated HRP was applied to the nitrocellulose. The inununoreactive band was visualized by a sensitive detection system, Amplified Opti-4CN kit (BIORAD, Hercules, CA).

Copolymerized plasminogen polyacrylamide gel electrophoresis. An 11% resolving polyacrylamide gel was copolymerized with plasminogen and gelatin as previously described by
20



Heussen et al. (14). The stacking gel was prepared as 4 % concentration without plasminogen and gelatin. Electrophoresis was performed at 4°C at a constant current of 8 mA. The residual SDS in gel slab was removed after gentle shaking at room temperature for lh in 2.5% Triton X-100. Then the gel slab was incubated in 0.1 M glycine-NaOH, pH 8.3, for 5 h at 37°C. Finally, the gel slab was stained and destained by standard Coomassie brilliant blue (R-250) dying system. The location of the peptide harboring enzymatic activity was not stained by dye in contrast to blue-paint background.
RESULTS
Construction of K2S gene carrying vector. From the vector p51-3 we amplified the kringle 2 plus ther serine protease portion of tPA (Ser174 in kringle 2 domain to ProS27 in the serine protease) using primers SK2/174 and ASSP. The amplified 1110 bp product was demonstrated by agarose gel electrophoresis (Fig. 1, lane 2) and was inserted into pComb3HSS phagemid by double Sfi I cleavage sites on 5' and 3' ends in the correct reading frame. Thus a new vector, pComb3H-K2S, harboring the K2S was generated, hi this vector K2S is flanked upstream by the OmpA signal sequence and donwstream by gp3. The correct insertion of K2S was verified both by restriction analysis with Sfi I (Fig. 2, lane 3), PCR-anaysis (demonstration of a single band at 1110 bp), and DNA sequencing. The schematic diagram of pComb3H~K2S map is given in Fig. 3.
Phage-displayed r-K2S. VCSM13 filamentous phage was used to infect pComb3H-K2S transformed E. coli XL-1 Blue, X[K2S]. VCSM13 was propagated and incorporated the K2S-gp3 fusion protein during the viral packaging processes. The harvested recombinant phage (K2S-) gave a concentration of 5.4 x 10" cfu/ml determined by reinfecting E. coli XL-1 Blue with PEG-precipitated phages. These recombinant phage particles were verified for the expression of r-K2S by sandwich ELISA. The phage-bound heterologous K2S protein was recognized by the monoclonal anti-kringle 2 antibody (16/B) by using sheep anti-tPA conjugated HRP antibody detection system. The absorbance of this assay was 1.12 ± 0.03 (Table 1). The amount of K2S detectable on 1012 phage particles is equal to 336 ng of protein in relation to the standard melanoma tPA. In order to corroborate that K2S-gp3 fusion protein was associated with phage particles, sheep anti-tPA conjugated HRP antibody was substituted by sheep anti-M13 antibody conjugated HRP. This irnmuno-reaction exhibited an absorbance of 1.89 ± 0.07 (Table 1). In
21

WO 02/40650 PCT/EP01/12857
21
contrast, if the capture antibody was sheep anti-M13 antibody, extremely low K2S was observed with sheep anti-tPA antibody conjugated HRP; the absorbance was only 0.17 ± 0.01 (Table 1). This suggested that only a minority of purified phage particles carried K2S-gp3 fusion protein. VCSM13 prepared from non-transformed XL-1 Blue was used as a negative control.
Construction of MpComb3H-K2S. We generated a stop codon between K2S and gp3 in pComb3H-K2S with the aid of the mutagenic primers (MSTPA and MASTPA) (Fig. 4). In order to enrich the newly synthesized and mutated MpComb3H-K2S, the cycle amplification mixture was thoroughly digested with Dpn I to degrade the old dam methylated pComb3H-K2S template (Dpn I prefers dam methylated DNA). After transforming of E. coli XL-1 Blue with MpComb3H-K2S, a transfoimant XM£K2S] was selected for further study. As a consequence of bp substitution, one Sfi I cleavage site close to the 3' end of K2S gene was lost after site-directed mutagenesis. A linear version of Sfi I cleaved MpComb3H-K2S was observed at 4319 bp without the appearance of inserted K2S gene fragment (Fig. 5, lane 3). Thus, the K2S gene encoding by MpComb3H-K2S was expressed in non-gp3 fusion form in XM[K2S].
Expression and purification of K2S. K2S expression in XM[K2S] was induced by IPTG. r-K2S was detectable by using ELISA both in the periplasmic space and in the culture supernatant . The amount of the heterologous protein in each preparation was determined by sandwich ELISA and related to the standard tPA. From 100 ml of the bacterial culture in shaker flask with the O.D. [600 nm] of 50, the periplasmic fraction yielded 1.38 µ,g of r-K2S (approximately 32%) whereas 2.96 p.g of r-K2S (approximately 68%) was obtained in the ammonium precipitated culture supernatant Sandwich ELISA was used to verify the PEG precipitated phage from VCSM13 infected XM[K2S]. No r-K2S captured by monoclonal anti-kringle 2 antibody was detected by anti-M13 conjugated HRP, indicating that K2S is not presented on the phage particles if gp3 is missing.
Amidolytic activity measurement If serine protease domain is present in the sample, plasminogen will be converted to plasmin. The produced plasmin will farther digest the S-2251 substrate to a colour product, p-nitroaniline, which has a maximum absorbance at 405 nm. The specific activity of the recombinant product is in accordance with the absorbance. The fibrinogen-dependent enzymatic activity of each sample i.e. K2S-, periplasmic r-K2S or culture
22

WO 02/40650 PCT/EP01/12857
22
supernatant r-K2S, was evaluated and compared. Both K2S- and periplasmic r-K2S illustrated - ' notably low enzymatic activity, which was below the sensitivity of the test (0.25 IU/ml). The culture supernatant r-K2S gave the fibrinogen-dependent enzymatic activity of 7 lU/ml. Thus, from 100 ml culture we obtained a total of 700 IU enzymatic activity. Without fibrinogen no s enzymatic activity of the r-K2S purified from culture supernatant was observed - whereas standard melanoma tPA showed some activity.
Demonstration of recombinant protein by irnmunoblotting. Partially purified K2S from culture supernatant of XM[K2S] revealed a molecular mass of 39 kDa by using sheep anti-tPA antibodies (Fig. 6). The negative control, partially purified culture supernatant of non-transformed XL 1-Blue, contained no reactive band with a similar size.
Localization of active enzyme by PAGE. The plasminogen has been copolymerized and immobilized with gelatin in the polyacrylamide gel prior to electrophoresis. The ammonium
sulfate precipitated culture supematants of E. coli XL-1 Blue, E. coli XL-1 Blue transformed with pComb3HSS and XM[K2S] were analyzed (Fig. 7). All samples were processed in non-reducing condition to preserve the correct conformation and activity of the serine protease domain. Transparent areas of serine protease digested plasminogen were observed only in the ammonium sulfate precipitated culture supematants of XM[K2S] at 34 and 37 kDa postions. The
other samples gave no clearing zones. The positive control lane of standard melanoma tPA also demonstrated enzymatic activity at 66 and 72 kDa positions.
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properties of phage-displayed fragments of human plasminogen. Eur. J. Biochem. 244:946-952.
21. Lobel, L. I., P. Rausch, I. Trakht, S. Pollak, and J. W. Lustbader. 1997. Filamentous phage displaying the extracellular domain of the hLH/CG receptor bind hCG specifically. Endocrinology. 138:1232-1239.
22. Lubiniecki, A., R Arathoon, G. Polastri, J. Thomas, M. Wiebe, R Gamick, A. Jones, R. van Reis, and S. Builder. Selected strategies for manufacture and control of recombinant tissue plasminogen activator prepared from cell culture, p. 442-451. In R E. Spier, J. B. Griffiths, J. Stephenne, and P. J. Crooy (ed.), Advances in animal cell biology and technology for bioprocesses. Butterworths, London.
23. Lucie, M. R, B. E. Forbes, S. E. Grosvenor, J. M. Carr, J. C. Wallace, and G. Forsberg. 1998. Secretion in Escherichia coli and phage-display of recombinant insulin-like growth factor binding protein-2. J. Biotechnol. 61:95-108.
24. Martin, U., S. Fischer, U. Kohnert, H.' Lill, R Rudolph, G. Sponer, A. Stern, and K. Strein. 1990. Properties of a novel plasminogen activator (BM 06.022) produced in Escherichia coli. Z. Kardiol. 79:167-170.
25. Obukowicz, M. G., M. E. Gustafson, K. D. Junger, R M. Leimgruber, A. J. Wittwer, T. C. Wun, T. G. Warren, B. F. Bishop, K. J. Mathis, D. T. McPherson, N. R. Siegel, M. G. Jenning, B. B. Brightwell, J. A. Diaz-Cllier, L. D. BeU, C. S. Craik, and W. C. Tacon. 1990. Secretion of active kringle-2-serine protease in Escherichia coli. Biochemistry 29:9737-9745.
26. Parmley, S. F., and G. P. Smith. 1988. Antibody-selectable filamentous fd phage vectors: affinity purification of target genes. Gene 73:305-318.
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25
27. Pennica, D., W. E. Holmes, W. J. Kohr, R. N. Harkras, G. A. Vehar, C. A. Ward, W. F. ' Bennett, E. Yelverton, P. H. Seeburg, H. I. Heyneker, D. V. Goeddel, and D. Collen. 1983.
Cloning and expression of human tissue-type plasminogen activator cDNA in E. coli. Nature
301:214-221. 28. Rippmann, J. F., M, Klein, C. Hoischen, B. Brocks, W. J. Rettig, J. Gumpert, K. Pfizenmaier,
R. Mattes, and D. Moosmayer. 1998. Procaryotic expression of single-chain variable-fragment
(scFv) antibodies:-secretion in L-form cells of Proteus mirabilis leads to active product and
overcomes the limitations of periplasmic expression in Escherichia coli. Appl. Environ.
Microbiol. 64:4862-4869. 29. Saito, Y., Y. Ishii, H. Sasaki, M. Hayashi, T. Fujimura, Y. Imai, S. Nakamura, S. Suzuki, J.
Notani, T. Asada, H. Horiai, K. Masakazu, and N. Mineo. 1994. Production and characterization
of a novel tissue-type plasminogen activator derivative in Escherichia coli. Biotechnol. Prog.
10:472-479.
30. Sarmientos, P., M. Duchesne, P. Denefle, J. Boiziau, N. Fromage, N. Delporte, F. Parker, Y.
Lelievre, J.-F. Mayaux, and T. Cartwright. 1989. Synthesis and purification of active human
tissue plasminogen activator from Escherichia coli. Biotechnology 7:495-501.
31. Scherrer, S., N. Robas, H. Zouheiry, G. Branlant, and C. Branlant 1994. Periplasmic
aggregation limits the proteolytic maturation of the Escherichia coli penicillin G amidase
precursor polypeptide. Appl. Microbiol. Biotechnol. 42:85-89.
32. Soeda, S., M. Kakiki, H. Shimeno, and A. Nagamatsu. 1986. Rapid and high-yield
purification of porcine heart tissue-type plasminogen activator by heparin-sepharose
choromatography. Life Sci. 39:1317-1324.
33. Szarka, S. J., E. G. Sihota, H. R. Habibi., and S.-L. Wong. 1999. Staphylokmase as a
plasminogen activator component in recombinant fusion proteins. Appl. Environ. Microbiol. 65:506-513.
, 34. Waldenstrom, M., E. Holmgren, A. Attersand, C. Kalderen, B. Lowenadler, B, Raden, L.
Hansson, and G. Pohl. 1991. Synthesis and secretion of a fibrinolytically active tissue-type
plasminogen activator variant in Escherichia coli. Gene 99:243-248.
35. Wan, E. W.-M., and F. Baneyx. 1998. TolAHI Co-overexpression Facilitates the Recovery of Periplasmic Recombinant Proteins into the Growth Medium of Escherichia coli. Protein Expr.
Purif. 14:13-22.
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S6. Zacharias, U., B. Fischer, F. Noll, and H. Will. 1992. Characterization of human tissue-type plasminogen activator with monoclonal antibodies: mapping of epitopes and binding sites for fibrin and lysine. Thromb. Haemost. 67:88-94.
FIGURE LEGENDS
FIG. 1. Validation of PCR amplification product of the K2S gene from the p51-3 vector by using SK2/174 and ASSP primers. Lane 1 shows 1 kb marker (Roche Molecular Biochemicals, Indianapolis, IN). Lane 2 was loaded with 1 µ,l of amplified product. A single band at 1110 bp is depicted. The electrophoresis was performed on a 1% agarose gel.

FIG. 2. Identification of inserted K2S gene at 1110 bp (*) after Sfi I digested pComb3H-K2S was demonstrated in lane 3. Lane 1 shows 1 kb marker. Lane 2 was loaded with uncut pComb3H-K2S. The electrophoresis was performed on a 1% agarose gel.
FIG. 3. Scheme of pCorrib3H-K2S showing two Sfi I cloning sites into which the K2S gene was inserted. Signal sequence (OmpA), ribosome binding site (RIBS), lac promoter, and gpIII gene are also depicted.
FIG. 4. Schematic diagram of the mutation site at the junction between the K2S and gpni genes on pComb3H-K2S. The annealing site of pComb3H-K2S is bound with a set of mutation primers (MSTPA and MASTPA) containing modified oligonucleosides (underlined). After performing the cycle amplification, the Sfi I site 1 (in bold) is modified and lost in the newly synthesized strand.
FIG. 5. Characterization of newly synthesized MpComb3H-K2S by the Sfi I restriction enzyme. A single band at 4319 bp that refers to a single cleavage site of MpComb3H-K2S is observed in
lane 3. No inserted K2S band at 1110 bp can be visualized. Lane 1 shows 1 kb marker. Lane 2
was loaded with uncut MpComb3H-K2S. The electrophoresis was performed on a 1% agarose
gel.
FIG. 6. Identification of immunological reactive band with of recombinant DNA-derived protein purified from XM[K2S} culture supernatant with sheep anti-tPA conjugated HRP. Lane 1 was
loaded with 40 ng of standard melanoma tPA (86/670); which showed the reactive band at 70
kDa. The partially purified and concentrated culture supernatants from non-transformed E. coli
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WO 02/40650 PCT/EP01/12857
XLl- Blue and XM[K2S] were applied to lane 2 and 3 respectively. The distinct reactive band was particularly demonstrated in lane 3 at 39 kDa.
FIG. 7. Molecular weight determination of extracellular r-K2S harboring active serine protease domain by copolymerized plasminogen polyacrylamide gel electrophoresis. Lane 1 contained the indicated molecular weight standards (X10"3), SDS-6H (Sigma, Saint Louis, MO). Fifty fig of the 55% saturated ammonium sulfate precipitated culture supernatant of XL-1 Blue, Xl-1 Blue transformed with pComb3HSS, and XM[K2S] were loaded in lane 2, 3, and 4 respectively. Lane 5 contained 50 mlU of standard melanoma tPA (86/670). Transparent zones of digested plasminogen in polyacrylamide gel are visible only in lane 4 at molecular weight of 34 and 37 kDa (B) and lane 5 at molecular weight of 66 and 72 kDa (A).
FIG. 8. Structure A (SEQ ID NO: 11)
Native K2S molecule from amino acids 174-527 without modification.

FIG. 9. Structure B-0 (SEQ ID NO: 12)
Native K2S molecule from amino acids 197-527 without modification.
FIG. 10. Structure B-l (SEQ ID NO:13) K2S molecule from amino acids 193-527, wherein to Structure B-0 of Fig. 9 the amino acids SEGN were added at the N-terminal portion.
FIG. 11. Structure B-2 (SEQ ID NO: 14)
K2S molecule from amino acids 193-527, as in Fig. 10, wherein Cys-261 was exchanged for Ser.

FIG. 12. Structure B-3 (SEQ ID NO: 15)
K2S molecule from amino acids 191-527, wherein to Structure B-0 of Fig. 9 the amino acids
SEGNSD were added at the N-terminal portion.
FIG. 13. Structure B-4 (SEQ ID NO:16)
K2S molecule from amino acids 191-527, as in Fig/12, wherein Cys-261 was exchanged for Ser.
28



FIG. 14. Structure C (SEQ ID NO: 17)
Native K2S molecule from amino acids 220-527 without modification. This molecule may be
further modified in a similar manner as disclosed for structure B in figures 10-13.
FIG. 15. Structure D (SEQ ID NO: 18)
Native K2S molecule from amino acids 260-527 without modification. This molecule may be further modified in a similar manner as disclosed for structure B in figures 10-13.
FIG. 16. tPA molecule (SEQ ID NO: 19)

TABLE 1. Detection of r-K2S molecule in phage preparation by sandwich ELISA

Tracer antibody (conjugated HRP)
Capture antibody Anti-tPA Anti-M13
K2S- VCSM13* R2S- VCSM13
Anti-kringle2b Anti-M13 1.12 ±0.04° 0.12 + 0.03 0.17 + 0.01 0.14 + 0.05 1.89 + 0.02 1.91 + 0.02 0.16 + 0.02 1.88 + 0.03
a VCSM13 was harvested from XL-1 Blue transformed with pComb3HSS.
n b Mouse monoclonal anti-kringle 2 (16/B) was used The other antibodies were
prepared from sheep immunoglobulin. c Value is mean of absorbance of each sample which was assayed in triplicate.

SEQUENCE LISTING Boehringer Ingelheim International GmbH
Methods for large scale production of recombinant DNA-derived tPA or K2S molecules
case 1-1170


GB 0027779.8 2000-11-14
25

Patentln Ver. 2.1

1
IB
DNA
Artificial Sequence


Description of Artificial Sequence: coding sequence of N-terminal part of K2S protein
1
tctgagggaa acagtgac 18

2 1128 DNA Artificial Sequence

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C220> Description of Artificial Sequence: coding sequence for QmpA-K2S fusion protein
2
atgaaaaaga cagctatcgc gattgcagtg gcactggctg gtttcgctac cgtggcccag 60 gcggcctctg agggaaacag tgactgctac tttgggaatg ggtcagccta ccgtggcacg 120 cacagcctca ccgagtcggg tgcctcctgc ctcccgtgga attccatgat cctgataggc 180 aaggtttaca cagcacagaa ccccagtgcc caggcactgg gcctgggcaa acataattac 240
tgccggaatc ctgatgggga tgccaagccc tggtgccacg tgctgaagaa ccgcaggctg 300 acgtgggagt actgtgatgt gccctcctgc tccacctgcg gcctgagaca gtacagccag 360 cctcagtttc gcatcaaagg agggctcttc gccgacatcg cctcccaccc ctggcaggct 420 gccatctttg ccaagcacag gaggtcgccc ggagagcggt tcctgtgcgg gggcatactc 480 atcagctcct gctggattct ctctgccgcc cactgcttcc aggagaggtt tccgccccac 540
cacctgacgg tgatcttggg cagaacatac cgggtggtcc ctggcgagga ggagcagaaa 600 tttgaagtcg aaaaatacat tgtccataag gaattcgatg atgacactta cgacaatgac 660 attgcgctgc tgcagctgaa atcggattcg tcccgctgtg cccaggagag cagcgtggtc 720 cgcactgtgt gccttccccc ggcggacctg cagctgccgg actggacgga gtgtgagctc 780 tccggctacg gcaagcatga ggccttgtct cctttctatt cggagcggct gaaggaggct 840
catgtcagac tgtacccatc cagccgctgc acatcacaac atttacttaa cagaacagtc 900
accgacaaca tgctgtgtgc tggagacact cggagcggcg ggccccaggc aaacttgcac 960
gacgcctgcc agggcgattc gggaggcccc ctggtgtgtc tgaacgatgg ccgcatgact 1020
ttggtgggca tcatcagctg gggcctgggc tgtggacaga aggatgtccc gggtgtgtac 1080
acaaaggtta ccaactacct agactggatt cgtgacaaca tgcgaccg 1128

3 66 DNA Escherichia coli
3
atgaaaaaga cagctatcgc gattgcagtg gcactggctg gtttcgctac cgtggcccag 60
gcggcc 66

4
1065
DNA
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3/27
Artificial Sequence

Description of Artificial Sequence: coding
sequence for K2S protein
4
tctgagggaa acagtgactg ctactttggg aatgggtcag cctaccgtgg cacgcacagc 60
ctcaccgagt cgggtgcctc ctgcctcccg tggaattcca tgatcctgat aggcaaggtt 120
tacacagcac agaaccccag tgcccaggca ctgggcctgg gcaaacataa ttactgccgg 180 aatcctgatg gggatgccaa gccctggtgc cacgtgctga agaaccgcag gctgacgtgg 240 gagtactgtg atgtgccctc ctgctccacc tgcggcctga gacagtacag ccagcctcag 300 tttcgcatca aaggagggct cttcgccgac atcgcctccc acccctggca ggctgccatc 360 tttgccaagc acaggaggtc gcccggagag cggttcctgt gcgggggcat actcatcagc 420
tcctgctgga ttctctctgc cgcccactgc ttccaggaga ggtttccgcc ccaccacctg 480 acggtgatct tgggcagaac ataccgggtg gtccctggcg aggaggagca gaaatttgaa 540 gtcgaaaaat acattgtcca taaggaattc gatgatgaca cttacgacaa tgacattgcg 600 ctgctgcagc tgaaatcgga ttcgtcccgc tgtgcccagg agagcagcgt ggtccgcact 660 gtgtgccttc ccccggcgga cctgcagctg ccggactgga cggagtgtga gctctccggc 720
tacggcaagc atgaggcctt gtctcctttc tattcggagc ggctgaagga ggctcatgtc 780 agactgtacc catccagccg ctgcacatca caacatttac ttaacagaac agtcaccgac 840 aacatgctgt gtgctggaga cactcggagc ggcgggcccc aggcaaactt gcacgacgcc 900 tgccagggcg attcgggagg ccccctggtg tgtctgaacg atggccgcat gactttggtg 960 ggcatcatca gctggggcct gggctgtgga cagaaggatg tcccgggtgt gtacacaaag 1020
gttaccaact acctagactg gattcgtgac aacatgcgac cgtga 1065
5 1128 DNA
Artificial Sequence

Description of Artificial Sequence: coding
sequence for OmpA-K2S fusion protein
5
atgaaaaaga cagctatcgc gattgcagtg gcactggctg gtttcgctac cgtggcccag 60
gcggcctctg agggaaacag tgactgctac tttgggaatg ggtcagccta ccgtggcacg 120
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cacagcctca ccgagtcggg tgcctcctgc ctcccgtgga attccatgat cctgataggc 180 aaggtttaca cagcacagaa ccccagtgcc caggcactgg gcctgggcaa acataattac 240 tgccggaatc ctgatgggga tgccaagccc tggtgccacg tgctgaagaa ccgcaggctg 300 acgtgggagt actgtgatgt gccctcctgc tccacctgcg gcctgagaca gtacagccag 360 cctcagtttc gcatcaaagg agggctcttc gccgacatcg cctcccaccc ctggcaggct 420 gccatctttg ccaagcacag gaggtcgccc ggagagcggt tcctgtgcgg gggcatactc 480 atcagctcct gctggattct ctctgccgcc cactgcttcc aggagaggtt tccgccccac 540 cacctgacgg tgatcttggg cagaacatac cgggtggtcc ctggcgagga ggagcagaaa 600 tttgaagtcg aaaaatacat tgtccataag gaattcgatg atgacactta cgacaatgac 660
attgcgctgc tgcagctgaa atcggattcg tcccgctgtg cccaggagag cagcgtggtc 720 cgcactgtgt gccttccccc ggcggacctg cagctgccgg actggacgga gtgtgagctc 780 tccggctacg gcaagcatga ggccttgtct cctttctatt cggagcggct gaaggaggct 840 catgtcagac tgtacccatc cagccgctgc acatcacaac atttacttaa cagaacagtc 900 accgacaaca tgctgtgtgc tggagacact cggagcggcg ggccccaggc aaacttgcac 960
gacgcctgcc agggcgattc gggaggcccc ctggtgtgtc tgaacgatgg ccgcatgact 1020
ttggtgggca tcatcagctg gggcctgggc tgtggacaga aggatgtccc gggtgtgtac 1080
acaaaggtta ccaactacct agactggatt cgtgacaaca tgcgaccg 1128
6 66 DNA Escherichia coli
6
atgaaaaaga cagctatcgc gattgcagtg gcactggctg gtttcgctac cgtggcccag 60
gcggcc . 66
7
1065
DNA
Artificial Sequence

Description of Artificial Sequence: coding sequence for K2S protein
7
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PCT/EP01/12857


tctgagggaa acagtgactg ctactttggg aatgggtcag cctaccgtgg cacgcacagc 60
ctcaccgagt cgggtgcctc ctgcctcccg tggaattcca tgatcctgat aggcaaggtt 120
tacacagcac agaaccccag tgcccaggca ctgggcctgg gcaaacataa ttactgccgg 180
aatcctgatg gggatgccaa gccctggtgc cacgtgctga agaaccgcag gctgacgtgg 240
gagtactgtg atgtgccctc ctgctccacc tgcggcctga gacagtacag ccagcctcag 300
tttcgcatca aaggagggct cttcgccgac atcgcctccc acccctggca ggctgccatc 360
tttgccaagc acaggaggtc gcccggagag cggttcctgt gcgggggcat actcatcagc 420
tcctgctgga ttctctctgc cgcccactgc ttccaggaga ggtttccgcc ccaccacctg 480
acggtgatct tgggcagaac ataccgggtg gtccctggcg .aggaggagca gaaatttgaa 540
' gtcgaaaaat acattgtcca taaggaattc gatgatgaca cttacgacaa tgacattgcg 600
ctgctgcagc tgaaatcgga ttcgtcccgc tgtgcccagg agagcagcgt ggtccgcact 660
gtgtgccttc ccccggcgga cctgcagctg ccggactgga cggagtgtga gctctccggc 720
tacggcaagc atgaggcctt gtctcctttc tattcggagc ggctgaagga ggctcatgtc 780
agactgtacc catccagccg ctgcacatca caacatttac ttaacagaac agtcaccgac 840
aacatgctgt gtgctggaga cactcggagc ggcgggcccc aggcaaactt gcacgacgcc 900
tgccagggcg attcgggagg ccccctggtg tgtctgaacg atggccgcat gactttggtg 960
ggcatcatca gctggggcct gggctgtgga cagaaggatg tcccgggtgt gtacacaaag 1020
gttaccaact acctagactg gattcgtgac aacatgcgac cgtga 1065
8
377
PRT
Artificial Sequence
21

Description of Artificial Sequence: OmpA-K2S fusion protein
30 8
Met Lys Lys Thr Ala He Ala He Ala Val Ala Leu Ala Gly Phe Ala
1 5 10 * 15
Thr Val Ala Gin Ala Ala Ser Glu Gly Asn Ser Asp Cys Tyr Phe Gly
20 25 30
Asn Gly Ser Ala Tyr Arg Gly Thr His Ser Leu Thr Glu Ser Gly Ala
35 40 45
34



Ser Cys Leu Pro Trp Asn Ser Met Ile Leu Ile Gly Lys Val Tyr Thr
50 55 60
Ala Gln Asn Pro Ser Ala Gln Ala Leu Gly Leu Gly Lys His Asn Tyr
65 70 75- 80
Cys Arg Asn Pro Asp Gly Asp Ala Lys Pro Trp Cys His Val Leu Lys
85 90 95
. Asn Arg Arg Leu Thr Trp Glu Tyr Cys Asp Val Pro Ser Cys Ser Thr
100 105 110
Cys Gly Leu Arg Gln Tyr Ser Gln Pro Gln Phe Arg Ile Lys Gly Gly
115 120 125
Leu Phe Ala Asp Ile Ala Ser His Pro Trp Gin Ala Ala Ile Phe Ala
130 135 140
Lys His Arg Arg Ser Pro Gly Glu Arg Phe Leu Cys Gly Gly Ile Leu
145 150 155 160
Ile Ser Ser Cys Trp Ile Leu Ser Ala Ala His Cys Phe Gln Glu Arg
165 170 , 175
Phe Pro Pro His His Leu Thr Val Ile. Leu Gly Arg Thr Tyr Arg Val
180 185 190
Val Pro Gly Glu Glu Glu Gln Lys Phe Glu Val Glu Lys Tyr Ile Val
195 200 205
His Lys Glu Phe Asp Asp Asp Thr Tyr Asp Asn Asp Ile Ala Leu Leu
210 215 220
Gln Leu Lys Ser Asp Ser Ser Arg Cys Ala Gln Glu Ser Ser Val Val
'225 230 235 240
Arg Thr Val Cys Leu Pro Pro Ala Asp Leu Gln Leu Pro Asp Trp Thr
245 250 255

7/27
Glu Cys Glu Leu Ser Gly Tyr Gly Lys His Glu Ala Leu Ser Pro Phe
260 265 270
Tyr Ser Glu Arg Leu Lys Glu Ala His Val Arg Leu Tyr Pro Ser Ser
275 280 285
Arg Cys Thr Ser Gln His Leu Leu Asn Arg Thr Val Thr Asp Asn Met
290 295 300
Leu Cys Ala Gly Asp Thr Arg Ser Gly Gly Pro Gln Ala Asn Leu His
305 310 315 320
Asp Ala Cys Gln Gly Asp Ser Gly Gly Pro Leu Val Cys Leu Asn Asp
325 330 335
Gly Arg Met Thr Leu Val Gly Ile Ile Ser Trp Gly Leu Gly Cys Gly
340 345 350
Gln Lys Asp Val Pro Gly Val Tyr Thr Lys Val Thr Asn Tyr Leu Asp
355 360 365
Trp Ile Arg Asp Asn Met Arg Pro Gly
370 375
9
4
PRT
Artificial Sequence

Description of Artificial Sequence: peptide sequence
9 Ser Glu Gly Asn 1
36



10 6 PRT Artificial Sequence


Description of Artificial Sequence: peptide sequence
(l0 )
Ser Glu Gly Asn Ser Asp

11 354 PRT Artificial Sequence

Description of Artificial Sequence: K2S 174-527
11
Ser Glu Gly Asn Ser Asp Cys Tyr Phe Gly Asn Gly Ser Ala Tyr Arg
as 1 5 10 15
Gly Thr His Ser Leu Thr Glu Ser Gly Ala Ser Cys Leu Pro Trp Asn
■20 25 30
Ser Met lie Leu He Gly Lys Val Tyr Thr Ala Gin Asn Pro Ser Ala
35 40 45
Gin Ala Leu Gly Leu Gly Lys His Asn Tyr Cys Arg Asn Pro Asp Gly
50 55 60

Asp Ala Lys Pro Trp Cys His Val Leu Lys Asn Arg Arg Leu Thr Trp
65 70 75 80
Glu Tyr Cys Asp Val Pro Ser Cys Ser Thr Cys Gly Leu Arg Gin Tyr
37

85 90 95
Ser Gln Pro Gln Phe Arg Ile Lys Gly Gly Leu Phe Ala Asp Ile Ala
100 105 110
'
Ser His Pro Trp Gln Ala Ala Ile Phe Ala Lys His Arg Arg Ser Pro
115 120 125
Gly Glu Arg Phe Leu Cys Gly Gly Ile Leu Ile Ser Ser Cys Trp Ile
130 135 140
Leu Ser Ala Ala His Cys Phe Gln Glu Arg Phe Pro Pro His His Leu
145 150 155 160
Thr Val Ile Leu Gly Arg Thr Tyr Arg Val Val Pro Gly Glu Glu Glu
165 170 175
Gln Lys Phe Glu Val Glu lys Tyr He Val His Lys Glu Phe Asp Asp
180 185 190

Asp Thr Tyr Asp Asn Asp Ile Ala Leu Leu Gln Leu Lys Ser Asp Ser
195 200 205
Ser Arg Cys Ala Gin Glu Ser Ser Val Val Arg Thr Val Cys Leu Pro
210 215 220
Pro Ala Asp Leu Gin Leu Pro Asp Trp Thr Glu Cys Glu Leu Ser Gly
225 230 235 240
Tyr Gly Lys His Glu Ala Leu Ser Pro Phe Tyr Ser Glu Arg Leu Lys
245 . 250 255
Glu Ala His Val Arg Leu Tyr Pro Ser Ser Arg Cys Thr Ser Gln His
260 265 270

Leu Leu Asn Arg Thr Val Thr Asp Asn Met Leu Cys Ala Gly Asp Thr
275 280 285
Arg Ser Gly Gly Pro Gin Ala Asn Leu His Asp Ala Cys Gin Gly Asp

290 295 300
Ser Gly Gly Pro Leu Val Cys Leu Asn Asp Gly Arg Met Thr Leu Val
305 . 310 315 320

Gly Ile Ile Ser Trp Gly Leu Gly Cys Gly Gln Lys Asp Val Pro Gly
325 330 335
Val Tyr Thr Lys Val Thr Asn Tyr Leu Asp Trp Ile Arg Asp Asn Met
340 345 350
Arg Pro

12
331
PRT
Artificial Sequence


Description of Artificial Sequence: K2S 197-527
12
Ser Gly Ala Ser Cys Leu Pro Trp Asn Ser Met Ile Leu Ile Gly Lys
1,5 10 15
Val Tyr Thr Ala Gln Asn Pro Ser Ala Gln Ala Leu Gly Leu Gly Lys
20 25 30

His Asn Tyr Cys Arg Asn Pro Asp Gly Asp Ala Lys Pro Trp Cys His
35 40 45
Val Leu Lys Asn Arg Arg Leu Thr Trp Glu Tyr Cys Asp Val Pro Ser
50 55 60
Cys Ser Thr Cys Gly Leu Arg Gln Tyr Ser Gln Pro Gln Phe Arg Ile
65 70 75 80

Ala Ser His Pro 90
Pro Gly Glu Arg 105
Ile Leu Ser Ala
Trp Gln Ala Ala 95
Phe Leu Cys Gly ,110
Ala His Cys Phe 125
Leu Gly Arg Thr
Phe Ala Asp Ile 85
His Arg Arg Ser
Ser Ser Cys Trp 120
Pro Pro His His 135
Pro Gly Glu Glu 150
Lys Glu Phe Asp 165
Leu Lys Ser Asp
Leu Thr Val Ile 140
Glu Gln Lys Phe 155
Asp Asp Thr Tyr 170
Ser Ser Arg Cys 185
Pro Pro Ala Asp
Glu Val Glu Lys 160
Asp Asn Asp Ile 175
Ala Gln Glu Ser 190
Leu Gln Leu Pro 205
His Glu Ala Leu
Gly Tyr Gly Lys 220
Lys Glu Ala His 235
His Leu Leu Asn 250
Thr Arg Ser Gly 265
Asp Ser Gly Gly
Val Arg Leu Tyr 240
Arg Thr Val Thr 255
Gly Pro Gln Ala 270
Pro Leu Val Cys 285
Lys Gly Gly Leu
Ile Phe Ala Lys
100
Gly lie Leu Ile 115
Gln Glu Arg Phe 130
Tyr Arg Val Val 145
Tyr He Val His
Ala Leu Leu Gin
180
Thr Val Cys Leu 200
Cys Glu Leu Ser 215
Ser Glu Arg Leu 230
Cys Thr Ser Gln 245
Cys Ala Gly Asp
'Ser Val Val Arg 195
Asp Trp Thr Glu 210
Ser Pro Phe Tyr 225

Pro Ser Ser Arg
Asp Asn Met Leu
2 60
Ala Cys Gln Gly 280
Asn Leu His Asp 275

40


Leu Asn Asp Gly Arg Met Thr Leu Val Gly Ile Ile Ser Trp Gly Leu
290 295 300
Gly Cys Gly Gln Lys Asp Val Pro Gly Val Tyr Thr Lys Val Thr Asn
305 310 315 320
Tyr Leu Asp Trp Ile Arg Asp Asn Met Arg Pro
325 330
13
339
PRT
Artificial Sequence


Description of Artificial Sequence: K2S 193-527, modified
13
Ser Glu Gly Asn Ser Leu Thr Glu Ser Gly Ala Ser Cys Leu Pro Trp
1 5 , 10 15
Asn Ser Met Ile Leu Ile Gly Lys Val Tyr Thr Ala Gln Asn Pro Ser
is 20 25 30
Ala Gln Ala Leu Gly Leu Gly Lys His Asn Tyr Cys Arg Asn Pro Asp
35 40 45
Gly Asp Ala Lys Pro Trp Cys His Val Leu Lys Asn Arg Arg Leu Thr
50_ 55 60
Trp Glu Tyr Cys Asp Val Pro Ser Cys Ser Thr Cys Gly Leu Arg Gln
65 70 75 80

Tyr Ser Gln Pro Gin Phe Arg Ile Lys Gly Gly Leu Phe Ala Asp Ile
85 90 95
Ala Ser His Pro Trp Gln Ala Ala Ile Phe Ala Lys His Arg Arg Ser
41



100 105 110
Pro Gly Glu Arg Phe Leu Cys Gly Gly Ile Leu Ile Ser Ser Cys Trp
115 120 125

Ile Leu Ser Ala Ala His Cys Phe Gln Glu Arg Phe Pro Pro His His
130 135 140
Leu Thr Val Ile Leu Gly Arg Thr Tyr Arg Val Val Pro Gly Glu Glu
ID 145 150 155 160
Glu Gln Lys Phe Glu Val Glu Lys Tyr Ile Val His Lys Glu Phe Asp
165 170 175
Asp Asp Thr Tyr Asp Asn Asp Ile Ala Leu Leu Gln Leu Lys Ser Asp
180 185 190
Ser Ser Arg Cys Ala Gln Glu Ser Ser Val Val Arg Thr Val Cys Leu
195 ' 200 205

Pro Pro Ala Asp Leu Gln Leu Pro Asp Trp Thr Glu Cys Glu Leu Ser
210 215 220
Gly Tyr Gly Lys His Glu Ala Leu Ser "Pro Phe Tyr Ser Glu Arg Leu
225 230 235 240
Lys Glu Ala His Val Arg Leu Tyr Pro Ser Ser Arg Cys Thr Ser Gln
245 250 255
His Leu Leu Asn Arg Thr Val Thr Asp Asn Met Leu Cys Ala Gly Asp
260 265 270
Thr Arg Ser Gly Gly Pro Gin Ala Asn Leu His Asp Ala Cys Gln Gly
275 280 285
35
Asp Ser Gly Gly Pro Leu Val Cys Leu Asn Asp Gly Arg Met Thr Leu
290 295 300
Val Gly Ile Ile Ser Trp Gly Leu Gly Cys Gly Gln Lys Asp Val Pro



305 310 315 320
Gly Val Tyr Thr Lys Val Thr Asn Tyr Leu Asp Trp Ile Arg Asp Asn
325 330 335
Met Arg Pro
14 335 PRT Artificial Sequence

Description of Artificial Sequence: K2S 193-527, modified
14
Ser Leu Thr Glu Ser Gly Ala Ser Cys Leu Pro Trp Asn Ser Met Ile
15 10 15
Leu Ile Gly Lys Val Tyr Thr Ala Gln Asn Pro Ser Ala Gln Ala Leu
20 25 30
Gly Leu Gly Lys His Asn Tyr Cys Arg Asn Pro Asp Gly Asp Ala Lys
35 40 45
Pro Trp Cys His Val Leu Lys Asn Arg Arg Leu Thr Trp Glu Tyr Cys
50 55 60
Asp Val Pro Ser Ser Ser Thr Cys Gly Leu Arg Gln Tyr Ser Gln Pro
65 70 75 80
Gln Phe Arg Ile Lys Gly Gly Leu Phe Ala Asp Ile Ala Ser His Pro
85 90 95
Trp Gln Ala Ala Ile Phe Ala Lys His Arg Arg Ser Pro Gly Glu Arg
100 105 110
43




Phe Leu Cys Gly Gly Ile Leu Ile Ser Ser Cys Trp Ile Leu Ser Ala
115 120 125
Ala His Cys Phe Gln Glu Arg Phe Pro Pro His His Leu Thr Val Ile
130 135 140
Leu Gly Arg Thr Tyr Arg Val Val Pro Gly Glu Glu Glu Gln Lys Phe
145 150 155 160

Glu Val Glu Lys Tyr Ile Val His Lys Glu Phe Asp Asp Asp Thr Tyr
165 170 175
Asp Asn Asp Ile Ala Leu Leu Gln Leu Lys Ser Asp Ser Ser Arg Cys
180 185 190
Ala Gln Glu Ser Ser Val Val Arg Thr Val Cys Leu Pro Pro Ala Asp
195 200 205
Leu Gln Leu Pro Asp Trp Thr Glu Cys Glu Leu Ser Gly Tyr Gly Lys
210 215 220
His Glu Ala Leu Ser Pro Phe Tyr Ser Glu Arg Leu Lys Glu Ala His
225 230 235 240

Val Arg Leu Tyr Pro Ser Ser Arg Cys Thr Ser Gln His Leu Leu Asn
245 250 255
Arg Thr Val Thr Asp Asn Met Leu Cys Ala Gly Asp Thr Arg Ser Gly
260 265 270
Gly Pro Gln Ala Asn Leu His Asp Ala Cys Gln Gly Asp Ser Gly Gly
275 280 285
Pro Leu Val Cys Leu Asn Asp Gly Arg Met Thr Leu Val Gly Ile Ile
290 295 300
Ser Trp Gly Leu Gly Cys Gly Gin Lys Asp Val Pro Gly Val Tyr Thr
305 310 315 320
44


Lys Val Thr Asn Tyr Leu Asp Trp Ile Arg Asp Asn Met Arg Pro
325 330 . 335
15
343
PRT
Artificial Sequence

Description of Artificial Sequence: K2S 191-527, modified
15
Ser Glu Gly Asn Ser Asp Thr His Ser Leu Thr Glu Ser Gly Ala Ser
15 10 15
Cys Leu Pro Trp Asn Ser Met Ile Leu Ile Gly Lys Val Tyr Thr Ala
20 25 30
Gln Asn Pro,Ser Ala Gln Ala Leu Gly Leu Gly Lys His Asn Tyr Cys
35 40 45
Arg Asn Pro Asp Gly Asp Ala Lys Pro Trp Cys His Val Leu Lys Asn
50 55 60
Arg Arg Leu Thr Trp Glu Tyr Cys Asp Val Pro Ser Cys Ser Thr Cys
65 70 75 80
Gly Leu Arg Gln Tyr Ser Gln Pro Gln Phe Arg Ile Lys Gly Gly Leu
85 90 95
Phe Ala Asp Ile Ala Ser His Pro Trp Gln Ala Ala Ile Phe Ala Lys
100 105 110
His Arg Arg Ser Pro Gly Glu Arg Phe Leu Cys Gly Gly Ile Leu Ile
115 120 125
45



Ser Ser Cys Trp Ile Leu Ser Ala Ala His Cys Phe Gln Glu Arg Phe
130 135 140
Pro Pro His His Leu Thr VAL Ile Leu Gly Arg Thr Tyr Arg Val Val
145 150 155 160
Pro Gly Glu Glu Glu Gln Lys phe Glu Val Glu Lys Tyr Ile Val His
165 170 175
Lys Glu Phe Asp Asp Asp Thr Tyr Asp Asn Asp Ile Ala Leu Leu Gln
180 185 190
Leu Lys Ser Asp Ser Ser Arg cys Ala Gln Glu Ser Ser Val Val Arg
195 200 205
.
Thr Val Cys Leu Pro Pro Ala Asp Leu Gln Leu Pro Asp Trp Thr Glu
210 215 220
Cys Glu Leu Ser Gly Tyr Gly Lys His Glu Ala Leu Ser Pro Phe Tyr
225 230 235 240
Ser Glu Arg Leu Lys Glu Ala His Val Arg Leu Tyr Pro Ser Ser Arg
245 250 255
Cys Thr Ser Gln His Leu Leu Asn Arg Thr Val Thr Asp Asn Met Leu -
260 265 270
Cys Ala Gly Asp Thr Arg Ser Gly Gly Pro Gln Ala Asn Leu His Asp
275 280 285

Ala Cys Gln Gly Asp Ser Gly Gly Pro Leu Val Cys Leu Asn Asp Gly
290 295 300
Arg Met Thr Leu Val Gly Ile Ile Ser Trp Gly Leu Gly Cys Gly Gln
305 310 315 320
Lys Asp Val Pro Gly Val Tyr Thr Lys Val Thr Asn Tyr Leu Asp Trp
325 330 335
46



Ile 02/40650 02/40650 Arg Asp Asn Met Arg Pro 340
16 , 343 PRT Artificial Sequence

Description of Artificial Sequence: K2S 191-527, modified
16
Ser Glu Gly Asn Ser Asp Thr His Ser Leu Thr Glu Ser Gly Ala Ser
15 10 15
Cys Leu Pro Trp Asn Ser Met Ile Leu Ile Gly Lys Val Tyr Thr Ala
20 25 30
Gln Asn Pro Ser Ala Gln Ala Leu Gly Leu Gly Lys His Asn Tyr Cys
35 40 , 45
Arg Asn Pro Asp Gly Asp Ala Lys Pro Trp Cys His Val Leu Lys Asn
50 55 60
Arg Arg Leu Thr Trp Glu Tyr Cys Asp Val Pro Ser Ser Ser Thr Cys
65 70 75 • 80
Gly Leu Arg Gln Tyr Ser Gln Pro Gln Phe Arg Ile Lys Gly Gly Leu
85 90 95
Phe Ala Asp Ile Ala Ser 'His Pro Trp Gln Ala Ala Ile Phe Ala Lys
100 ' 105 110
33
His Arg Arg Ser Pro Gly Glu Arg Phe Leu Cys Gly Gly Ile Leu Ile
115 120 125
Ser Ser Cys Trp Ile Leu Ser Ala Ala His Cys Phe Gln Glu Arg Phe
47


130 135 140
Pro Pro His His Leu Thr Val Ile Leu Gly Arg Thr Tyr Arg Val Val
145 150 155 160

Pro Gly Glu Glu Glu Gln Lys Phe Glu Val Glu Lys Tyr Ile Val His
165 170 175
Lys Glu Phe Asp Asp Asp Thr Tyr Asp Asn Asp Ile Ala Leu Leu Gln
180 185 190
Leu Lys Ser Asp Ser Ser Arg Cys Ala Gln Glu Ser Ser Val Val Arg
195 200 205
Thr Val Cys Leu Pro Pro Ala Asp Leu Gln Leu Pro Asp Trp Thr Glu
210 215 220
Cys Glu Leu Ser Gly Tyr Gly Lys His Glu Ala Leu Ser Pro Phe Tyr
225 230 235 . 240
20
Ser Glu Arg Leu Lys Glu Ala His Val Arg Leu Tyr Pro Ser Ser Arg
245 250 255
Cys Thr Ser Gln His Leu Leu Asn Arg Thr Val Thr Asp Asn Met Leu
260 265 270
Cys Ala Gly Asp Thr Arg Ser Gly Gly Pro Gln Ala Asn Leu His 'Asp
275 ' 280 285
Ala Cys Gln Gly Asp Ser Gly Gly Pro Leu Val Cys Leu Asn Asp Gly
290 295 300
Arg Met Thr Leu Val Gly Ile He Ser Trp Gly Leu Gly Cys Gly Gln
305 310 315 320

Lys Asp Val Pro Gly Val Tyr Thr Lys Val Thr Asn Tyr Leu Asp Trp
325 330 335
He Arg Asp Asn Met Arg Pro
48

17 308 PRT Artificial Sequence
Description of Artificial Sequence: K2S 220-527
17
Ser Ala Gln Ala Leu Gly Leu Gly Lys His Asn Tyr Cys Arg Asn Pro
.1 5 10 15

Asp Gly Asp Ala Lys Pro Trp Cys His Val Leu Lys Asn Arg Arg Leu
20 25 30
Thr Trp Glu Tyr Cys Asp Val Pro Ser Cys Ser Thr Cys Gly Leu Arg
35 40 45
Gln Tyr Ser Gln Pro Gln Phe Arg Ile Lys Gly Gly Leu Phe Ala Asp
50 55 60
Ile Ala Ser His Pro Trp Gln Ala Ala Ile Phe Ala Lys His Arg Arg
65 70 75 80
Ser Pro Gly Glu Arg Phe Leu Cys Gly Gly Ile Leu Ile Ser Ser Cys
85 90 95

Trp Ile Leu Ser Ala Ala His Cys Phe Gln Glu Arg Phe Pro Pro His
100 105 110
His Leu Thr Val Ile Leu Gly Arg Thr Tyr Arg Val Val Pro Gly Glu
115 120 125
Glu Glu Gln Lys Phe Glu Val Glu Lys Tyr Ile Val His Lys Glu Phe
130 135 140
49


Asp Asp Asp Thr Tyr Asp Asn Asp Ile Ala Leu Leu Gln Leu Lys Ser
145 150 155 160
Asp Ser Ser Arg Cys Ala Gln Glu Ser Ser Val Val Arg Thr Val Cys
165 170 175
Leu Pro Pro Ala Asp Leu Gln Leu Pro Asp Trp Thr Glu Cys Glu Leu
180 ' 185 190
Ser Gly Tyr Gly Lys His Glu Ala Leu Ser Pro Phe Tyr Ser Glu Arg
195 200 205
Leu Lys Glu Ala His Val Arg Leu Tyr Pro Ser Ser Arg Cys Thr Ser
210 215 220
Gln His Leu Leu Asn Arg Thr Val Thr Asp Asn Met Leu Cys Ala Gly
225 230 235 240
Asp Thr Arg Ser Gly Gly Pro Gln Ala Asn Leu His Asp Ala Cys Gln
245 250 255
Gly Asp Ser Gly Gly Pro Leu Val Cys Leu Asn Asp Gly Arg Met Thr
260 265 270
Leu Val Gly Ile Ile Ser Trp Gly Leu Gly Cys Gly Gln Lys Asp Val
275 280 285
Pro Gly Val Tyr Thr Lys Val Thr Asn Tyr Leu Asp Trp Ile Arg Asp
290 295 300
Asn Met Arg Pro 305
18
268
PRT
Artificial Sequence
50


Description of Artificial Sequence: K2S 260-527
18
Ser Cys Ser Thr Cys Gly Leu Arg Gin Tyr Ser Gin Pro Gin Phe Arg
15 10 15
He lys Gly Gly Leu Phe Ala Asp He Ala Ser His Pro Trp Gin Ala
20 25 .30

Ala Ile Phe Ala Lys His Arg Arg Ser Pro Gly Glu Arg Phe Leu Cys
35 40 45
Gly Gly Ile Leu Ile Ser Ser Cys Trp Ile Leu Ser Ala Ala His Cys
50 55 60
Phe Gln Glu Arg Phe Pro Pro His His Leu Thr Val Ile Leu Gly Arg
65 70 75 80
Thr Tyr Arg Val Val Pro Gly Glu Glu Glu Gln Lys Phe Glu Val Glu
85 90 95
Lys Tyr Ile Val His Lys Glu Phe Asp Asp Asp Thr Tyr Asp Asn Asp
100 105 110

Ile Ala Leu Leu Gin Leu Lys Ser Asp Ser Ser Arg Cys Ala Gln Glu
115 120 ' 125
Ser Ser Val Val Arg Thr Val Cys Leu Pro Pro Ala Asp Leu Gln Leu
130 135 140
Pro Asp Trp Thr Glu Cys Glu Leu Ser Gly Tyr Gly Lys His Glu Ala
145 150 155 160
Leu Ser Pro Phe Tyr Ser Glu Arg Leu Lys Glu Ala His Val Arg Leu
165 170 175
Tyr Pro Ser Ser Arg Cys Thr Ser Gln His Leu Leu Asn Arg Thr Val
180 185 190



Thr Asp Asn Met Leu Cys Ala Gly Asp Thr Arg Ser Gly Gly Pro Gln
195 200 205
Ala Asn Leu His Asp Ala Cys Gln Gly Asp Ser Gly Gly Pro Leu Val
210 215 220
Cys Leu Asn Asp Gly Arg Met Thr Leu Val Gly Ile Ile Ser Trp Gly
225 230 235 240

Leu Gly Cys Gly Gln Lys Asp Val Pro Gly Val Tyr Thr Lys Val Thr
245 . 250 255
Asn Tyr Leu Asp Trp Ile Arg Asp Asn Met Arg Pro
260 265
19 527 PRT
Homo sapiens
19
Ser Tyr Gln Val Ile Cys Arg Asp Glu Lys Thr Gln Met Ile Tyr Gln
1 5 10 15
Gln His Gln Ser Trp Leu Arg Pro Val Leu Arg Ser Asn Arg Val Glu
20 ' 25 30
Tyr Cys Trp Cys Asn Ser Gly Arg Ala Gln Cys His Ser Val Pro Val
35 40 45
Lys Ser Cys Ser Glu Pro Arg Cys Phe Asn Gly Gly Thr Cys Gln Gln
50 55 60

Ala Leu Tyr Phe Ser Asp Phe Val Cys Gln Cys Pro Glu Gly Phe Ala
65 70 75 80
Gly Lys Cys Cys Glu Ile Asp Thr Arg Ala Thr Cys Tyr Glu Asp Gln



85 90 95
Gly Ile Ser Tyr Arg Gly Thr Trp Ser Thr Ala Glu Ser Gly Ala Glu
100 105 110
Cys Thr Asn Trp Asn Ser Ser Ala Leu Ala Gln Lys Pro Tyr Ser Gly
115 120- '125
Arg Arg Pro Asp Ala Ile Arg Leu Gly Leu Gly Asn His Asn Tyr Cys
130 135 140
Arg Asn Pro Asp Arg Asp Ser Lys Pro Trp Cys Tyr Val Phe Lys Ala
145 150 155 160
Gly Lys Tyr Ser Ser Glu phe Cys Ser Thr Pro Ala Cys Ser Glu Gly
165 170 175
Asn Ser Asp Cys Tyr Phe Gly Asn Gly Ser Ala Tyr Arg Gly Thr His
180 185 190
Ser Leu Thr Glu Ser Gly Ala Ser Cys Leu Pro Trp Asn Ser Met Ile
195 200 205 '
Leu Ile Gly Lys Val Tyr 'Thr Ala Gln Asn Pro Ser Ala Gln Ala Leu
210 215 220
Gly Leu Gly Lys His Asn Tyr Cys Arg Asn Pro Asp Gly Asp Ala Lys
225 230 235 240
Pro Trp Cys His Val Leu Lys Asn Arg Arg Leu Thr Trp Glu Tyr Cys
245 250 255
Asp Val Pro Ser Cys Ser Thr Cys Gly Leu Arg Gln Tyr Ser Gln Pro
260 265 270

Gln Phe Arg Ile Lys Gly Gly Leu Phe Ala Asp Ile Ala Ser His Pro
275 280 285
Trp Gln Ala Ala Ile Phe Ala Lys His Arg Arg Ser Pro Gly Glu Arg


290 295 300
Phe Leu Cys Gly Gly Ile Leu Ile Ser Ser Cys Trp Ile Leu Ser Ala
305 310 315 320

Ala His Cys Phe Gln Glu Arg Phe Pro Pro His His Leu Thr Val Ile
325 330 335
Leu Gly Arg Thr Tyr Arg Val Val Pro Gly Glu Glu Glu Gln Lys Phe
340 345 350
Glu Val Glu Lys Tyr Ile Val His Lys Glu Phe Asp Asp Asp Thr Tyr
355 360 365
Asp Asn Asp Ile Ala Leu Leu Gln Leu Lys Ser Asp Ser Ser Arg Cys
370 375 380
Ala Gln Glu Ser Ser Val Val Arg Thr Val Cys Leu Pro Pro Ala Asp
385 390 395 400

Leu Gln Leu Pro Asp Trp Thr Glu Cys Glu Leu Ser Gly Tyr Gly Lys
405 410 415
His Glu Ala Leu Ser Pro Phe Tyr Ser Glu Arg Leu Lys Glu Ala His
420 425 430
Val Arg Leu Tyr Pro Ser Ser Arg Cys Thr Ser Gln His Leu Leu Asn
435 440 '445
Arg Thr Val Thr Asp Asn Met Leu Cys Ala Gly Asp Thr Arg Ser Gly
450 455 460
Gly Pro Gln Ala Asn Leu His Asp Ala Cys Gln Gly Asp Ser Gly Gly
465 470 475 480

Pro Leu Val Cys Leu Asn Asp Gly Arg Met Thr Leu Val Gly Ile Ile
485 490 495
Ser Trp Gly Leu Gly Cys Gly Gln Lys Asp Val Pro Gly Val Tyr Thr
54

500 505 510
Lys Val Thr Asn Tyr Leu Asp Trp Ile Arg Asp Asn Met Arg Pro
515 520 525

20 12 DNA Artificial Sequence

Description of Artificial Sequence: coding sequence for SEGN
20
tctgagggaa ac 12
21 22
PRT
>
Escherichia coli
21
Met Lys Lys Thr Ala Ile Ala Ile Ala Val Ala Leu Ala Gly Phe Ala
1 5• 10 15
Thr Val Ala Gln Ala Ala
20
22 42 DNA
Artificial Sequence

Description of Artificial Sequence: primer

22
gaggaggagg tggcccaggc ggcctctgag ggaaacagtg ac

23
42
DNA
Artificial Sequence


Description of Artificial Sequence: primer
23 gaggaggagc tggccggcct ggcccggtcg catgttgtca cg
24 26 DNA
Artificial Sequence

Description of Artificial Sequence: primer

24
acatgcgacc gtgacaggcc ggccag
25 26 DNA Artificial Sequence

Description of Artificial Sequence: primer
25
ctggccggcc tgtcacggtc gcatgt
56

|We claim:
1. Method for the production of recombinant DNA-derived tissue plasminogen activator (tPA), a tPA variant, a Kringle 2 Serine protease molecule (K2S) or a K2S variant in prokaryotic cells, wherein said tPA, tPA variant, K2S molecule or K2S variant is secreted extracellularly as an active and correctly folded protein, characterized in that the prokaryotic cell contains and expresses a vector comprising the DNA coding for said tPA, tPA variant, K2S molecule or K2S variant operably linked to the DNA coding for the signal peptide OmpA.
2. Method as claimed in claim 1, wherein said the prokaryotic cell contains and expresses a vector comprising the DNA coding for said tPA, tPA variant, K2S •molecule or K2S variant operably linked to the DNA coding for the signal peptide OmpA which is operably linked to the nucleic acid molecule defined by the sequence TCTGAGGOAAACAGTGAC (SEQ ID NO: 1) or a functional derivative thereof.
3. Method as claimed in claim 1 or 2, wherein the prokaryotic cell is E. coli.
4. Method as claimed in one of claims 1 to 3, wherein the following steps are carried out:

a) the DNA encoding the tPA, tPA variant, K2S molecule or K2S variant is amplified by PCR;
b) the PCR product is purified;
c) said PCR product is inserted into a vector comprising the DNA coding for OmpA signal peptide and the DNA coding for gpIII in such a way that said PCR product is operably linked upstream to the DNA coding for the OmpA signal sequence and linked downstream to the DNA coding for gplll of said vector;'
d) that a stop codon is inserted between said tPA, tPA variant, K2S molecule or K2S variant and gplll;

e) said vector is expressed by the prokaryotic cell;
f) the tPA, tPA variant, K2S molecule or K2S variant is purified.
-57-

5. Method as claimed in any one of claims 1 to 4, wherein the vector is a phagemid vector comprising the DNA coding for OmpA signal peptide and the DNA coding for gpIII.
6. Method as claimed in any one of claims 1 to 5, wherein the vector is the pComb3HSS phagemid.
7. Method as claimed in one of claims 1 to 6, wherein the DNA Sequence of
OmpA linked upstream to K2S comprises the following sequence or a variant due
to the degenerate nucleotide code:
ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGGTrTCGCTACCGTGGCCCAG
GCGGCCTCTGAGGGAAACAGTGACrGCTACTTTGGGAATGGGTCAGCCTACCGTGGCAC
GCACAGCCTCACTGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGG
CAAGGTTTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATAATT
ACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAACCGCAGG
CTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGACAGTACAGC
CAGCCTCAGTTTCGCATCAAAGGAGGGCTCTrCGCCGACATCGCCTCCCACCCCrGGCAG
GCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTTCCTGTGCGGGGGCAT
ACTCATCAGCTCCTGCTGGATTCTCTCTGCCGCCCACTGCnCCAGGAGAGGTTTCCGCCC
CACCACCTGACGGTGATCTTGGGCAGAACATACCGGGTGGTCCCTGGCGAGGAGGAGCA
GAAATTTGAAGTCGAAAAATACATTGTCCATAAGGAATTCGATGATGACACTTACGACA
ATGACATTGCGCTGCTGCAGCTGAAATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCG
TGGTCCGCACTGTGTGCCTTCCCCCGGCGGACCTGCAGCTGCajGACTGGACGGAGTGTG
AGCTCTCCGGCTACGGCAAGCATGAGGCCTTGTCTCCrTTCTATTCGGAGCGGCTGAAGG
AGGCTCATGTCAGACTGTACCCATCCAGCCGCTGCACATCACAACATTTACTTAACAGAA
CAGTCACCGACAACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAAC
TTGCACGACGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGC
ATGACnTGGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGT
GTGTACACAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCG (SEQ ID
N0:2) •
8. Method as claimed in any one of claims 1 to 7, wherein the DNA Sequence
of OmpA comprises the following sequence:
ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGGTTTCGCTACCGTGGCCCAG GCGGCC(SEQ ID NO:3)
9. Method as claimed in any one of claims 1 to 8, wherein the DNA Sequence
of OmpA consists of the following sequence:
ATGAAAAAGACAGCTATC GCGATTGCAGTGGCACTGGCTGGTTTCGCTACCGTGGCCCAG GCGGCC (SEQ ID N0:3)
58

10. Method as claimed in any one of claims 1 to 9, wherein the DNA of the
tPA, tPA variant, 1 molecule or K2S variant is preceeded by a lac promoter and/or a ribosomal binding site.
11. Method as claimed in any one of claims 1 to 10, wherein the DNA coding
for the tPA, tPA variant, K2S molecule or K2S variant is selected from the group of DNA molecules coding for at least 90% of the amino acids 87 - 527, 174 - 527, 180 - 527 or 220 - 527 of the human tissue plasminogen activator protein.
12. Method as claimed in any one of claims 5 to 11, wherein the DNA
Sequence of K2S comprises the following sequence or a functional variant thereof or a variant due to the degenerate nucleotide code:
TCTGAGGGAAACAOTOACTGCTACTTTCKGGAATGGGTCAGCCTACCGTGGCACGCACAG CCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGGCAAGGT TTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGOCAAACATAATTACTGCC GGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAACCGCAGGCTGACG TGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGACAGTACAGCCAGCCT CAGTTTCGCATCAAAGGAGGGCTCTTCGCCCGACATCGCCTCCCACCCCTGGCAGGCTGCC
ATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTTCCTGTGCGGGGGCATACTCATC
AGCTCCTGCTGGATrCTCTCTGCCGCCCACTGCTTCCAGGAGAGGTTTCCGCCCCACGACC
TGACGGTGATCTTGGGCAGAACATACCGGGTGGTCCCTGGCGAGGAGGAGCAGAAATTT
GAAGTCGAAAAATACATTGTCCATAAGGAATTCGATGATGACACTTACGACAATGACATT
GCGCTGCTGCAGCTGAAATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGC
ACTGTGTGCCTTCCCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCC
GGCTACGGCAAGCATGAGCKXTrrGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCAT
GTCAGACTGTACCCATOCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACC
GACAACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGA
CGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGACTTT
GGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGTGTGTACA
CAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCGTGA (SEQ ID NO:4).
13. Method as claimed in any one of claims 5 to 12, wherein the DNA
Sequence of K2S consists of the following sequence:
59

.TCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCACGCACAG CCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGGCAAGGT TTACACAGCACAGAACCCCAGTGCCCAGGCACrGGGCCTGGGCAAACATAATTACTGCC GGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAACCGCAGGCTGACG TGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGACAGTACAGCCAGCCT CAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCCCACCCCTGGCAGGCTGCC ATCTrTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTTCCTGTGCGGGGGCATACTCATC AGCTCCTCKTGGATTCTCTCTGCCGCCCACTGCrrcCAGGAGAGGTTTCCGCCCCACCACC TGACGGTGATCTTGGGCAGAACATACCXJGGTGGTCCCTGGCGAGGAGGAGCAGAAATT GAAGTCGAAAAATACATrGTCCATAAGGAATTCGATGATGACACTTACGACAATGACATT GCGCTGCTGCAGCTGAAATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGC ACTGTGTGCCTTCCCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCC GGCTACGGCVUGCATGAGGCCrrGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCAT GTCAGACTGTACCCATCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACC GACAACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGA CGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGACTTT GGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGTGTGTACA CAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCGTGA (SEQ IDN0:4).
14. DNA molecule prepared by the method as claimed in claim 1 wherein it
is coding for:
a) the OmpA protein operably linked to
b) a DNA molecule coding for a polypeptide containing the amino acids SEGN, which itself is operatively linked to
c) DNA molecule coding for a polypeptide containing the kringle 2 domain and
the serine protease domain of tissue plasminogen activator protein.
15. DNA molecule as claimed in claim 14, wherein said DNA sequence comprises the following sequence or a variant due to the degenerate nucleotide code:
60

|ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGGTTTCGCTACCGTGGCCCAG 'GCGGCCTCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCAC GCACAGCCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGG CAAGGTTTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATAATT ACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAACCGCAGG CTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGACAGTACAGC CAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCCCACCCCTGGCAG GCTGCCATCTn-GCCAAGCACAGGAGGTCGCCCGGAGAGCGGrrCCTGTGCGGGGGCAT ACTCATCAGCTCCTGCTGGATTCTCTCTGCCGCCC^CTGCTTCCAGGAGAGGTITCCGCCC CACCACCTGACGGTGATCTTGGGCAGAACATACCGGGTGGTCCCTGGCGAGGAGGAGCA GAAATTTGAAGTCGAAAAATACATTGTCCATAAGGAATTCGATGATGACACTTACGACA ATGACATTGCGCTGCTGCAGCTGAAATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCG TGGTCCGCACTGTGTGCCTTCCCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTG AGCTCTCCGGCTACGGCAAGCATGAGGCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGG AGCKHCATGTCACLACTGTACCCATCCAGCCGCTGCACATCACAACATTTACTTAACAGAA CAGTCACCGACAACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAAC TTGCACGACGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGC ATGACTTGGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGT GTGTACACAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCG 16. DNA molecule as claimed in claim 14 or 15, wherein said DNA sequence consists of the following sequence:
ATGAAAAAGACAGCTATCGCGATTGCAGTGGCACTGGCTGG'nTCGCTACCGTGGCCCAG
GCGGCCTCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCAC
GCACAGCCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGG
CAAGGTTTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATAATT
ACTGCCGGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAACCGCAGG
CTGACGTGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGACAGTACAGC
CAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCCCACCCCTGGCAG
GCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCCGTTCCTGTGCGGGGGCAT
ACTCATCAGCTCCTGCTGGATTCTCTCTGCCGCCCACTGCTTCCAGGAGAGGTTTCCGCCC
CACCACCTGACGGTGATCTTGGGCAGAACATACCGGGTGGTCCCTGGCGAGGAGGAGCA
GAAATTTGAAGTCGAAAAATACATTGTCCATAAGGAATTCGATGATGACACTTACGACA
ATGACATTGCGCTGCTGCAGCTGAAATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCG
TGGTCCGCACTGTGTGCCTTCCCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTG
AGCTCTCCGGCTACGGCAAGCATGAGGCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGG
AGGCTCATGTCAGACTGTACCCATCCAGCCGCTGCACATCACAACATTTAC1TAACAGAA
CAGTCACCGACAACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAAC
TTGCACGACGCCTGCCAGGGCGATTCGGGAGGCCCX:CTGGTGTGTCTGAACGATGGCCGC
ATGACTTTGGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGT
GTGTACACAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCG (SEQ ID
N0:5).
34

. DNA molecule as claimed in any one of claims 14 to 16, wherein said DNA sequence b) is coding for at least 90% of the amino acids 87 - 527 of the human tissue plasminogen activator protein.
18. DNA molecule as claimed in any one of claims 14 to 17, wherein said DNA sequence b) is coding for at least 90% of the amino acids 174 - 527 of the human tissue plasminogen activator protein.
19. DNA molecule as claimed in any one of claims 14 to 18, wherein said DNA sequence b) is coding for at least 90% of the amino acids 180 - 527 of the human tissue plasminogen activator protein.
20. DNA molecule as claimed in any one of claims 14 to 19, wherein said DNA sequence b) is coding for at least 90% of the amino acids 220 - 527 of the human tissue plasminogen activator protein.
21. DNA molecule as claimed in any one of claims 14 to 20 wherein said DNA
sequence b) is hybridizing under stringent conditions to the following sequence:
TCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCACGCACAG
CCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGGCAAGGT
TTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATAATrACTGCC
GGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAACCGCAGGCTGACG
TGGGAGTACTGTGATGTG(XCTCCTGCTCCACCTGCGGCCTGAGACAGTACAGCCAGCCT
CAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCCCACCCCTGGCAGGCTGCC
ATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTTCCTGTGCGGGGGCATACTCATC
AGCTCCTGCTGGATTCTCTCTGCCGCCCACTGCTTCCAGGAGAGGTTTCCGCCCCACCACC
TGACGGTGATCrrGGGCAGAACATACCGGGTGGTCCCTGGCGAGGAGGAGCAGAAATTT
GAAGTCGAAAAATACATTGTCCATAAGGAATTCGATGATGACACTTACGACAATGACATT
GCGCTGCTGCAGCTGAAATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGC
ACTGTGTGCCTTCCCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCC
GGCTACGGCAAGCATGAGGCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCAT
GTCAGACTGTACCCATCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACC
GACAACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGA
CGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGATTT
GGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGTGTGTACA
CAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCGTGA (SEQ IDNO:7).


. DNA molecule as claimed in any one of claims 14 to 21, wherein said DNA sequence b) consists of the following sequence:
TCTGAGGGAAACAGTGACTGCTACTTTGGGAATGGGTCAGCCTACCGTGGCACGCACAG CCTCACCGAGTCGGGTGCCTCCTGCCTCCCGTGGAATTCCATGATCCTGATAGGCAAGGT TTACACAGCACAGAACCCCAGTGCCCAGGCACTGGGCCTGGGCAAACATAATTACTGCC GGAATCCTGATGGGGATGCCAAGCCCTGGTGCCACGTGCTGAAGAACCGCAGGCTGACG
TGGGAGTACTGTGATGTGCCCTCCTGCTCCACCTGCGGCCTGAGACAGTACAGCCAGCCr
CAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCCCACCCCTGGCAGGCTGCC
ATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTTCCTGTGCGGGGGCATACTCATC
AGCTCCTGCTCK3ATTCTCTCTGCCGCCCACTGCTTCCAGGAGAGGTTTCCGCCCCACCACC
TGACGGTGATCTTGGGCAGAACATACCGGGTGGTCCCTGGCGAGGAGGAGCAGAAATTT
GAAGTCGAAAAATACATTGTCCATAAGGAATTCXJATGATGACACTTACGACAATGACATT
GCGCTGCTGCAGCTGAAATCGGATTCGTCCCGCTGTGCCCAGGAGAGCAGCGTGGTCCGC
ACTGTGTGCCTTCCCCCGGCGGACCTGCAGCTGCCGGACTGGACGGAGTGTGAGCTCTCC
GGCTACGGCAAGCATGAGGCCTTGTCTCCTTTCTATTCGGAGCGGCTGAAGGAGGCTCAT
GTCAGACTGTACCCATCCAGCCGCTGCACATCACAACATTTACTTAACAGAACAGTCACC
GACAACATGCTGTGTGCTGGAGACACTCGGAGCGGCGGGCCCCAGGCAAACTTGCACGA
CGCCTGCCAGGGCGATTCGGGAGGCCCCCTGGTGTGTCTGAACGATGGCCGCATGACTTT
GGTGGGCATCATCAGCTGGGGCCTGGGCTGTGGACAGAAGGATGTCCCGGGTGTGTACA
CAAAGGTTACCAACTACCTAGACTGGATTCGTGACAACATGCGACCGTGA (SEQ ID NO:7).


Dated this 6th day of May, 2003.

63

Documents:

482-mumnp-2003-cancelled page(06-06-2007).pdf

482-mumnp-2003-claim(granted)-(06-06-2007).doc

482-mumnp-2003-claim(granted)-(06-06-2007).pdf

482-mumnp-2003-correspondence(12-09-2007).pdf

482-mumnp-2003-correspondence(ipo)-(05-03-2008).pdf

482-mumnp-2003-drawing(06-06-2007).pdf

482-mumnp-2003-form 18(28-12-2005).pdf

482-mumnp-2003-form 1a(06-05-2003).pdf

482-mumnp-2003-form 2(granted)-(06-06-2007).doc

482-mumnp-2003-form 2(granted)-(06-06-2007).pdf

482-mumnp-2003-form 3(06-05-2003).pdf

482-mumnp-2003-form 3(06-06-2007).pdf

482-mumnp-2003-form 5(06-05-2003).pdf

482-mumnp-2003-form 5(06-06-2007).pdf

482-mumnp-2003-form-pct-ipea-409(06-05-2003).pdf

482-mumnp-2003-form-pct-isa-210(06-06-2007).pdf

482-mumnp-2003-petition under rule 137(06-06-2007).pdf

482-mumnp-2003-power of authority(06-05-2003).pdf

482-mumnp-2003-ppower of authority(06-06-2007).pdf

abstract1.jpg


Patent Number 216016
Indian Patent Application Number 482/MUMNP/2003
PG Journal Number 13/2008
Publication Date 28-Mar-2008
Grant Date 05-Mar-2008
Date of Filing 06-May-2003
Name of Patentee BOEHRINGER INGELHEIM INTERNATIONAL GMBH
Applicant Address BINGER STRASSE 173, D-55216 INGELHEIM AM RHEIN, GERMANY
Inventors:
# Inventor's Name Inventor's Address
1 JIRADEJ MANOSROI 234/171 SIRIWATANA NIVAS, MAHIDOL ROAD, NONG HOI, MUANG, CHIANG MAI 50000, THAILAND
2 ARANYA MANSROI 234/171 SIRIWATANA NIVAS, MAHIDOL ROAD, NONG HOI, MUANG MAI 50000
3 CHATCHAI TAYAPIWATANA 369/73 SOI PRADOO 1, JANAVA RD., BANGKOK 10120
4 FRIEDRICH GOETZ BEIM HERBSTENHOF 31, 72076 TUEBINGEN
5 ROLF-GUENTHER WERNER HUGO-HAERING-STR. 72, 88400 BIBERACH
PCT International Classification Number C12N 15/62
PCT International Application Number PCT/EP01/12857
PCT International Filing date 2001-11-07
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 0027779.8 2000-11-14 U.K.