Title of Invention

A COMPOUND OF THE FORMULA-I

Abstract The invention relates to new antithrombotic agents, a process for their preparation, pharmaceutical compositions containing the compounds as active ingredients.
Full Text

(The invention relates to new antithrombotic agents, a process for their preparation, pharmaceutical compositions containing the compounds as active ingredients] as well as the use of said compounds for the manufacture of medicaments.
Serine proteases are enzymes which play an important role in the blood coagulation cascade. Members of this group of proteases are for example thrombin, trypsin, factors Vila, IXa, Xa, XIa, Xlla, and protein C.
Thrombin is the final serine protease enzyme in the coagulation cascade. The prime fimction of thrombin is the cleavage of fibrinogen to generate fibrin monomers, which are cross-linked to form an insoluble gel. In addition, thrombin regulates its own production by activation of factors V and VIII earlier in the cascade. It also has important actions at cellular level, where it acts on specific receptors to cause platelet aggregation, endothelial cell activation and fibroblast proliferation. Thus thrombin has a central regulatory role in haemostasis and thrombus formation. Since inhibitors of thrombin may have a wide range of therapeutical applications, extensive research is done in this area.
Another important serine protease, factor Xa, catalyzes the conversion of prothrombin into thrombin.
In the development of synthetic inhibitors of serine proteases, and more specifically of thrombin, the benzamidine moiety is one of the key structures. It mimics the protonated side-chain of the basic amino acids Arg and Lys of its natural substrates. Compounds with this moiety have been studied extensively and repeatedly. A very potent representative of this type of thrombin inhibitors is the amino acid derivative Na-(2-naphthylsulfonyl)-glycyl-4-amidinophenylalanin-piperidide (NAPAP) (Stiirzebecher, J. et al., Thromb. Res. 29, 635-642, 1983). However, the profile of NAPAP is unattractive for therapeutical applications: for example, the compound has low thrombin specificity and is poorly soluble. Derivatives of NAPAP were subsequently prepared, such as the N-alkyl substituted derivatives disclosed in EP 0,236,163 or the glycopeptide derivatives described EP 0,558,961, Proc. Am. Pept. Symp., 13th (60LXAW); 94;

pp. 643-5 (Stuber, W. et al., Pept.: Chem., Struct. Biol.,), Proc. Int. Symp. Controlled Release Bioact. Mater. (PCRMEY, 10220178); 94;Vol 21 st; pp. 712-12 (Walter. E. et al), and EP 0,513,543. However, although these derivatizations may have led to improvements of the pharmacological profile when compared to NAPAP, all such NAPAP-derived compounds are still active only as direct thrombin inhibitors and they have a restricted plasma half-life and a fast clearance (thus displaying their anti-thrombin activity only for a short period of time).

Z is a negatively charged oligosaccharide residue comprising two to six monosaccharide units, the charge being compensated by positively charged counterions;
or a pharmaceutically acceptable salt thereof or a prodrug thereof are potent and highly versatile antithrombotics. The compounds of the invention have anti-thrombin activity, but also the structure of the compounds may be selectively modified so that they have a tuneable mixed profile of both non-mediated, direct anti-thrombin (factor Ila) activity dnd anti-thrombin III

(AT-III) mediated anti-Xa activity. The compounds of the invention thus are dual inhibitors. Compounds of the invention have a long plasma half-life and, as a result, they possess prolonged anti-thrombin activity compared to NAPAP or its above reported derivatives. Further, compounds of the invention may escape the neutralizing action of platelet factor 4 (PF4). Low toxicity is also an advantageous aspect of conpounds of this invention.
Another type of dual inhibitors is disclosed in EP 0,649,854. Contrary to the compounds of the present invention the conjugated saccharide compounds disclosed in that document display indirect, AT-III mediated anti-thrombin activity, in addition to AT-III mediated anti-Xa activity.
The compounds of the present invention are useful for treating and preventing thrombin-mediated and thrombin-associated diseases. This includes a number of thrombotic and prothrombotic states in which the coagulation cascade is activated which include, but are not limited to, deep vein thrombosis, pulmonary embolism, thrombophlebitis, arterial occlusion from thrombosis or embolism, arterial reocclusion during or after angioplasty or thrombolysis, restenosis following arterial injury or invasive cardiological procedures, postoperative venous thrombosis or embolism, acute or chronic atherosclerosis, stroke, myocardial infarction, cancer and metastasis, and neurodegenerative diseases. The compounds of the invention may also be used as anticoagulants in extracorporeal blood circuits, as necessary in dialysis and surgery. The compounds of the invention may also be used as in vitro anticoagulants.
The mixed profile of the compounds of the invention may be tuned by varying the nature of the oligosaccharide residue Z and the length of the spacer Q. A range of profiles is thereby available.
Any negatively charged oligosaccharide residue of 2 to 6 saccharide units is useable in the compounds of the present invention. Suitable compounds of the invention are compounds wherein Z is a sulfated or phosphoryiated oligosaccharide residue. Preferably, the oligosaccharide residue Z is derived from an oligosaccharide which has per se AT-III mediated anti-Xa activity, such as the saccharides disclosed in EP 0,454,220 and EP 0,529,715. Particularly preferred oligosaccharide residues are pentasaccharide residues. Most preferably, Z has the formula (11)


4
Further preferred compounds of the invention are compounds of formula I, wherein R1 is phenyl, 4-methoxy-2,3,6-trimethylphenyl or naphthyl. In preferred compounds, NR3R represents the piperidinyl group. Preferably, R2 is H.
The chemical structure of the spacer is of minor or no importance for the anti-thrombotic activity
of the compounds of the invention, it may however not be completely rigid. Highly flexible
spacers are more suitable than others.
Further, for synthetic reasons some spacers are more appropriate than others.
Suitable spacers that can easily be used have for example the formula (III):



In the description of the compounds of formula (I) the following definitions are used.
The term (l-8C)alkyl means a branched or unbranched alkyl group having 1-8 carbon atoms, for
example methyl, ethyl, propyl, isopropyl, butyl, sec-butyl, tert-butyl hexyl and octyl. Methyl and
ethyl are preferred alkyl groups.
The term (l-8C)alkoxy means an alkoxy group having 1-8 carbon atoms, the alkyl moiety having
the meaning as previously defined. Methoxy is a preferred alkoxy group.
The term (3-8C)cycloaIkyl means a cycloaikyl group having 3-8 carbon atoms, being
cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl or cyclo-octyl. Cyclopentyl and
cyciohexyl are preferred cycloaikyl groups.
The spacer length is the number of atoms of the spacer, counted along the shortest chain
between Z and the peptide part of the molecule, not counting the oxygen atom of the
oligosaccharide Z which is connected to the spacer.
The term "prodrug"' means a compound of the invention in which the amino group of the
amidino-moiety is protected, e.g. by hydroxy or a (l-6C)alkoxycarbonyl group.
The compounds of the present invention are prepared by derivatizing NAPAP (or a NAPAP-analogue) at the glycine position with cysteine or lysine using methods generally known in the art, which compound subsequently (a) is coupled to a oligosaccharide-spacer residue or (b) is coupled to a spacer, which then is derivatized with a thiol group and subsequently is coupled to an oligosaccharide residue. Any suitable oligosaccharide may be used for this purpose, for example oligosaccharides known in literature (e.g. fi-om EP 0,454,220 and EP 0,529,715, but not limited to these sources) or commercially available oligosaccharides. The oligosaccharides may be phosphorylated at an appropriate time by methods e.g. described by Buijsman, R. et al. (Abstracts of papers, 9th European Carbohydrate Symposium Utrecht 1997, Abstract A150). The coupling of the spacer to the oligosaccharide can for instance be performed by using the methods described in EP 0,649,854.

The peptide coupling, a procedural step in the above described method to prepare the compounds of the invention, can be carried out by methods commonly known in the art for the coupling - or condensation • of peptide fragments such as by the azide method, mixed anhydride method, activated ester method, or, preferably, by the carbodiimide method, especially with the addition of catalytic and racemisation suppressing compounds like N-hydroxysuccinimide and N-hydroxybenzotriazole. An overview is given in The Peptides, Analysis. Synthesis, Biology. Vol 3, E. Gross and J. Meienhofer, eds. (Academic Press, New York, 1981).
Amine functions present in the compounds may be protected during the synthetic procedure by an N-protecting group, which means a group commonly used in peptide chemistry for the protection of an a-amino group, like the tert-butyloxycarbonyl (Hoc) group, the benzyloxycarbonyl (Z) group, the 9-fluorenylmethyloxycarbonyl (Fmoc) group or the phthaloyl (Phth) group. Removal of the protecting groups can take place in different ways, depending on the nature of those protecting groups. Usually deprotection takes place under acidic conditions and in the presence of scavengers. An overview of amino protecting groups and methods for their removal is given in the above mentioned The Peptides, Analysis, Synthesis, Biology. Vol 3.
The compounds of the invention, which can occur in the fomi of a free base, may be isolated from the reaction mixture in the form of a pharmaceutically acceptable salt. The pharmaceutically acceptable salts may also be obtained by treating the free base of formula (I) with an organic or inorganic acid such as HCl, HBr, HI, H2SO4, H3PO4, acetic acid, propionic acid, glycolic acid, maleic acid, malonic acid, methanesulphonic acid, fumaric acid, succinic acid, tartaric acid, citric acid, benzoic acid, ascorbic acid and the like.
The compounds of this invention possess chiral carbon atoms, and may therefore be obtained as a pure enantiomer, or as a mixture of enantiomers, or as a mixture containing diastereomers. Methods for obtaining the pure enantiomers are well known in the art, e.g. crystallization of salts which are obtained from optically active acids and the racemic mixture, or chromatography using chiral columns. For diastereomers straight phase or reversed phase columns may be used.

The compounds of the invention may be administered enterally or parenterally. The exact dose and regimen of these compounds and compositions thereof will neccessarily be dependent upon the needs of the individual subject to whom the medicament is being administered, the degree of affliction or need and the judgment of the medical practitioner. In general parenteral administration requires lower dosages than other methods of administration which are more dependent upon absorption. However, the daily dosages are for humans preferably 0.001-100 mg per kg body weight, more preferably 0,01-10 mg per kg body weight. The medicament manufactured with the compounds of this invention may also be used as adjuvant in acute anticoagulant therapy. In such a case, the medicament is administered with other compounds useful in treating such disease states.
Mixed with pharmaceutically suitable auxiliaries, e.g. as described in the standard reference, Gennaro et al.. Remington's Pharmaceutical Sciences, (18th ed.. Mack Publishing Company, 1990, see especially Part 8: Pharmaceutical Preparations and Their Manufacture) the compounds may be compressed into solid dosage units, such as pills, tablets, or be processed into capsules or suppositories. By means of pharmaceutically suitable liquids the compounds can also be applied in the form of a solution, suspension, emulsion, e.g. for use as an injection preparation, or as a spray, e.g. for use as a nasal spray.
For making dosage units, e.g. tablets, the use of conventional additives such as fillers, colorants, polymeric binders and the like is contemplated. In general any pharmaceutically acceptable additive which does not interfere with the function of the active compounds can be used. Suitable carriers with which the compositions can be administered include lactose, starch, cellulose derivatives and the like, or mixtures thereof, used in suitable amounts.

The invention is firther illustrated by the following examples.
EXAMPLES
Abbreviations used:
DMAP = N,N-dimethylaminopyridine
TEA = triethylamine
Z = benzyloxycarbonyl
Ac = acetyl
MMTr = monomethoxytrityl
Bn = benzyl
DCHA = dicyclohexylammonium
EDCI = l-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride
HOBt = 1-hydroxybenzotriazole
DiPEA = diisopropylethylamine
Pyr = pyridinyl
TEG = tetraethylene glycol
HEG = hexaethylene glycol
APA = amidinophenylalanine
Cys = cysteine
The numbers of the compounds refer to the compounds on the formula sheets.
4-0-(4-0-(2,3,4,6-tetra-0-acetyl-a-D-glucopyranosyl)-2,3i6-tri-0-acetyI-a-D-glucopyranosyi)-23i6-tri-0-acetyl-a/β-D-glucopyranosyl trichloroacetiniidate(4)
To a stirred solution of maltotriose (1) (2,0 g, 4.0 mmol) in pyridine (100 mL) was added acetic anhydride (6.2 mL, 65 mmol) and a catalytic amoimt of DMAP (0.79 g, 6.5 mmol). After 5 h the reaction mixture was poured into aqueous sodium hydrogencarbonate (1 M, 250 mL) and extracted three times with ethyl acetate (200 mL). The combined organic layers were dried on magnesium sulfate and concentrated in vacuo. The product was purified by column chromatoeraphy (light petroleum/ethyl acetate, 1/1 to 0/1, v/v) giving 2 as a white foam (91%

yield, 3.5 g). Anomeric deacetylation was achieved by treatment of 2 (3.0 g, 3.1 mmol) with 0.1 M solution of hydrazine acetate in dimethylformamide (34 mL, 3.4 mmol) for 1 h. After concentration in vacuo the reaction mixture was diluted with ethyl acetate (50 mL), washed with sodium hydrogencarbonate (1 M, 3 x 25 mL), dried (magnesium sulfate) and concentrated. Purification by silica gel column chromatography (light petroleum/ethyl acetate, 3/2 to 1/0, v/v) gave 3 (92% yield, 2.7 g). Compoxmd 3 (2.7 g, 3.1 mmol) was dissolved indichloromethane (15 mL) and trichloroacetonitrile (1.7 mL) together with a catalytic amount of cesium carbonate (0.2 g, 0.62 mmol) were added. After 1 h the reaction mixture was filtered and the filtrate was concentrated under reduced pressure. Purification of the crude 4 by column chromatography (light petroleum/ethyl acetate/TEA, 50/49/1 to 0/99/1, v/v/v) yielded pure 4 as white foam (1.9 g, 71%).
N-BenzyIoxycarbonyl-1-aminobexaetbylene glycol 4-0-(4-0-(2,3,4,6-tetra-0-acetyl-a-D-gIucopyranosyl)-2,3,6-tri-0-acetyl-a-D-glucopyranosyl)-2,3,6-tri-0-acetyI-p-D-giucopyranoside (6)
A solution of donor 4 (0.69 g, 0.76 mmol) and acceptor 5 (0.31 g, 0.76 mmol) in dichloromethane (1.5 mL) was stirred for 1 h under a flow of argon in the presence of activated molecular sieves 4A (250 mg). The solution was cooled to -20 °C and a solution of trimethylsilyl trifluoromethanesulfonate (15 µL) in dichloromethane (0.6 mL) was added dropwise to the reaction mixture. After 10 min, TLC analysis (5% methanol in dichloromethane) showed the presence of one product. Solid sodium hydrogencarbonate (0.3 g) was added to the reaction mixture, which was stirred for 10 min and then filtrated. The filtrate was diluted with dichloromethane (50 mL), subsequently washed with aqueous sodium hydrogencarbonate (1 M, 2 X 25 mL), dried (magnesium sulfate), and concentrated in vacuo. The residue was chromatographed on silica gel (0-4 % methanol in ethyl acetate) yielding pure 6 (0.57 g, 56% yield).
N-Benzyioxycarbonyl-l-aminohexaethylene giycoi 4-0-(4-0-(a-D-glucopyranosyl)-a-D-giucopyraDOsyl)-p-D-glucopyraDoside(7)
compound 6 (0.57 g, 0.43 mmol) was treated with a solution of potassium tert-butylate (43 mg, 10 mg per mmol Ac) in methanol (15 mL). After 1 h TLC analysis (ethyl acetate/pyrdine/acetic

acid/water, 5/7/4/1.6, v/v/v/) indicate a complete conversion of 6 into 7. The reaction was neutralized with Dowex 50 WX4-H resin. The resin was removed by filtration and the filtrate was concentrated under reduced pressure to afford 7 (0.37 g, 95% yield), which was used without further purification.
TV-Benzyloxycarbonyl-l-aminohexaethylene glycol 4-0-(4-0-(a-D-glucopyranosyl-2394,6-
tetrakis-(dibenzylphosphate))-a-D-glucopyranosyI-23,6-tris(dibenzylphosphate))-p-D-glucopyranoside2,3,6-tris(dibenzylpho$phate) (9)
A solution of 1H-tetrazole (54 mg, 0.77 mmol) in acetonitril (1 mL) was addded to a mixture of



mmol). After stirring for 16 h, the mixture was diluted with dichloromethane (20 mL) and washed with water (2 x 10 mL). The organic layer was dried (magnesium sulfate) and concentrated m vacuo. The residue was purified by silica gel column chromatography (first 10%-20 % methanol in dichloromethane to remove impurities and then ethyl acetate/pyridine/acetic acid/water (16/7/1.6/4, v/v/v/v) to release product) and subsequently by gel filtration on Sephadex LH-20 (eluent: methanol/dichloromethane, 4/1, v/v) to yield homogeneous 16 (70%, 0.19 g).


(m, IH, H3"), 4.15 (m, IH, H4"); 3.95-3.84 (H5, maltotriose); spacer. 3.65-3.51 (m, 22H, OCH2 HEG), 3.35 (m,, 2H, CH2NH2), 3.15 (s, 2H, SCli2{0)), peptide: 8.31 (s, IH, HaromNAS), 8.06-7.67 (m, 6H, HaromNAS), 7.70, 7.17 (2 x d, 4H, Harom APA, >=7.8 Hz), 4.28 (m, IH, aCH APA), 3.91 (m, IH, aCH Cys), 3.30-3.04 (m, 4H, CH2N piperidine), 2.82-2.62 (m, 3H, pCHj Cys, PCH APA), 2.57 (m, IH, pCH' APA), 1.45-1.25 (m, 6H, CH2 piperidine); ES-MS: [M-3H]^' 724. L rM-2Hl^" 1086.7.

2.3 mmol) were added to this solution. After 1 h, the reaction mixture was diluted with dichloromethane (50 mL), washed three times with ice water (20 mL), dried (magnesium sulfate) and concentrated to give 22 (0.98 mg, 98% yield,), which was used without further purification.
N-tert-ButyloxycarbonyI-N'-ben2enesulfonyl-(L)-lysine(24)
Prepared as described for 12, using 23 and benzenesulfonyl chloride as starting materials. (0,86 g, 75% yield).
N-(14-.S-2-PyridinesulfcnyH4-raercapto-3,6,9,12-tetraoxatetradecanoyl)-N"-benzenesulfonyl-(L)-iysine (26)

Compound 24 (0.86 g, 2.2 mmol) was treated with 3 N hydrogen chloride in ethyl acetate. Alter 15 min the reaction mixture was concentrated in vacuo. Traces of acid in the residue were removed by coevaporation with toluene. The crude 25 was dissolved in a mixture of dioxane/water (4/1, v/v, 2.5 mL) and to this solution compound 22 (0.98 g, 2.1 mmol) and DiPEA (1.1 mL, 6.6 mmol) were added. After 1 h, the reaction mixture was diluted with dichloromethane (100 mL) and washed with 5 % aqueous citric acid (2 x 50 mL). The organic layer was dried (magnesium sulfate) and concentrated in vacuo. The residual oil was purified by silica gel column chromatography (0-10% methanol/ethyl acetate) to give homogeneous 26 (0.95 g, 67% yield).


Partially protected pentasaccharide 30
Known pentasaccharide 29 (53 mg, 49 µmol) (R.C. Buijsman et al., Chem. Eur. J. 1996, 2, 12, pl572-1577) was dissolved in dimethylformamide (0.25 mL) and water (1 mL) and treated with iV-(benzyloxycarbonyloxy)-succinimide (18 mg, 72 |imol) and N-ethylmorpholine (18.6 mL). After stirring for 15 min, TLC analysis (ethyl acetate/pyridine/acetic acid/water, 5/7/1.6/4, v/v/v/v) revealed the reaction to be complete and the reaction mixture was directly applied onto a RP-18 column, which was eluted with water/methanol (90/10 to 60/40). The appropriate fractions were pooled and concentrated to a small volume and applied on a Dowex 50 WX4-H' ion-exchange column in water. The eluate was concentrated in vacuo to yield pure 30 (54 mg, 91% yield).
Sulfated pentasaccharide 32
Compound 30 (54 mg, 45 µmol) was dissolved in dimethylformamide (1 mL). Triethylamine sulfurtrioxide complex (0.51 g, 5 equiv for each hydroxyl group) was added and the mixture was stirred under a nitrogen atmosphere at 55 °C for 16 h. The mixture was subsequently cooled to 0 °C and aqueous sodium hydrogen carbonate was added (5 equiv for each eq. of triethylamine sulfurtrioxide complex). The mixture was stirred for 1 h, concentrated to a small volume and applied onto a Sephadex G-25 column, which was eluted with 10 % acetonitril in water. The appropriate fractions were pooled and concentrated to a small volume, which was subsequently passed through a column of Dowex 50 WX4 (Na+ form) eluted with water. The eluate was concentrated and redissolved in 0,2 N hydrogen chloride (1 mL) and allowed to stand for 16 h at 4 °C. The reaction mixture was neutralized with 0.1 N sodium hydroxide and desalted on a Sephadex G-25 column and eluted with 10 % acetonitril in water to afford homogeneous 31. Compound 31 was dissolved in tert-butanol/water (6/1, v/v, 20 mL) containing a few drops of acetic acid. The solution was stirred under a continuous stream of hydrogen in the presence of 10 % Pd/C (100 mg). After 3 h the Pd/C catalyst was removed by filtration and the filtrate was concentrated in vacuo to furnish pure 32 (60 mg, 60% yield).
Condensation coupling of pentasaccharide 32 with peptide 16
Pentasaccharide 32 (15 mg, 6.5 µmol) was dissolved in 0.1 M NaH2P04 buffer (2 mL, pH 7.5) and to this solution was added sulfo-SlASTM (16 mg, 33 jimol). After stirring 3 h in the dark.

HPLC analysis (monoQ anion exchange) revealed the reaction to be complete and the crude 34 was purified on a Superdex 30 column (10% acetonitril in water). The appropriate fractions were pooled and concentrated in vacuo at low temperature (25 °C). To a solution of NAPAP analogue 16 (9 mg, 14 µmol) in a mixture of methanol (1 mL) and 0.1 M Na2HP04 buffer (0.75
mL, pH 7.0), degassed by passing through helium and by sonification before use, was added

tributylphosphine (3.9 µL, 15 µmol). After stirring for 1 h under an argon atmosphere, HPLC analysis (Lichrospher® RP-18 column) indicated a complete cleavage of the 2-pyridinesulfenyl group. A solution of derivatized pentasaccharide 34 in dimethylformamide (0.25 mL) and 0.1 M Na2HP04 buffer (0.50 mL, pH 7.0) was added and the mixture was stirred for 3 h. The crude product was applied onto a Sephadex G-50 column, which was eluted with 10 % acetonitril in water. The appropriate fractions were pooled, concentrated to a smallolume and desalted on a Superdex 30 column, which was eluted with 10 % methanol in water. Concentration and lyophiiization yielded conjugate III as a white solid (9 mg, 52 % yield).
'H NMR (D2O, 600 MHz, HH-COSY): 5 3.60, 3.53, 3.43 (3 x s, 9H, CH30E,G.H); ring D: 5.53 (m, IH, HI), 4.15 (m, IH, H2), 4.58 (m, IH, H3), 3.56 (m, IH, H4), 3.92 (m, IH, H5), 4.26, 4.13 (2 X m, 2H, H6, H6'); ring E: 4.70 (d, IH, HI, Ju=8.1 Hz,), 4.21 (m, IH, H2), 3.62 (m, IH, H3), 3.92 (m, IH, H4), 3.74 (m, IH, H5); ring F: 5.39 (d, IH, HI, J,,2=3.8 Hz), 4.22 (m, IH, H2), 4.56 (m, IH, H3), 3.83 (t, IH, H4, J3.4=J45=9,8 Hz), 4.12 (m, IH, H5); ring G: 5.15 (bs, IH, HI), 4.35 (m, IH, H2), 3.76 (m, IH, H3), 4.21 (m, IH, H4), 4.80 (m, IH, H5); ring H: 5.10 (d, IH, HI, J,,2=3.6 Hz), 4.31 (m, IH, H2), 4.54 (m, IH, H3), 4.21 (m, IH, H4); spacer: 7.51, 7.53, 7.13, 712 (4 x d, 4H, Harom SIAB), 3.73 (m, 2H, C//2CH2NH2), 3.66 (m, 12H, OCH2 TEG), 3.31 (m,, 2H, CH2NH2); peptide 8.27, 8.22 (2 x s, IH, Harom NAS), 7.98-7.60 (m, 6H, H.„„,NAS), 7.71, 7.64, 7.46, 7.44 (4 x d, 4H, H.™„ APA), 4.60, 4.45 (2 x t, IH, aCH APA, ^cH,pcH=6.6 Hz), 4.00, 3.97 (2 x m, IH, aCH Cys), 3.10-2.85 (m, 4H, CH2N piperidine), 2.82-2.70 (m, 3H, pCHj Cys, pCH APA), 2.61 (m, IH, PCH' APA), 1.55-1.15 (m, 6H, CH2 piperidine); ES-MS: [M-H]- 2680.6
Using similar methods, the following compounds are prepared:




The biological activities of the compounds of the present invention were determined by the following test methods.
L Anti-thrombin assay
Thrombin (Factor Ila) is a factor in the coagulation cascade.
The anti-thrombin activity of compounds of the present invention was assessed by measuring
spectrophotometrically the rate of hydrolysis of the chromogenic substrate s-2238 exterted by
thrombin. This assay for anti-thrombin activity in a buffer system was used to assess the IC50-
value of a test compound.
Test medium: Tromethamine-NaCl-polyethylene glycol 6000 (TNP) buffer
Reference compound: 12581 (Kabi)
Vehicle: TNP buffer.
Solubilisation can be assisted with dimethylsulphoxide, methanol, ethanoi, acetonitrile or tert.-butyl alcohol which are without adverse effects in concentrations up to 2.5% in the final reaction mixture.

Technique Reagents*
1. Tromethamine-NaCl (TN) buflfer
Composition of the buffer:
Tromethamine (Tris) 6.057 g (50 mmol)
NaCl 5.844 g (100 mmol)
Water to 1 1
The pH of the solution is adjusted to 7.4 at 37 °C with HCl (10
mmo1-r").
2. TNP buflfer
Polyethylene glycol 6000 is dissolved in TN buffer to give a concentration of 3 g-l'
3. S-2238 solution
One vial S-2238 (25 mg; Kabi Diagnostica, Sweden) is dissolved in 20 ml TN buflfer to give a concentration of 1.25 mg-ml' (2 mmol- 1".
4. Thrombin solution
Human thrombin (16 000 nKat-vial'; Centraal Laboratorium voor Bloedtransfusie, Amsterdam, The Netherlands) is dissolved in TNP buflfer to give a stock solution of 835 nKat-ml' Immediately before use this solution is diluted with TNP buflfer to give a concentration of 3.34 nKat-ml'.
* - All ingredients used are of analytical grade
- For aqueous solutions ultrapure water (Milli-Q quality) is used.
Preparatipn of test.and reference compound.solutions The test and reference compounds are dissolved in Milli-Q water to give stock concentrations of 10-2 mo1-1r. Each concentration is stepwise diluted with the vehicle to give concentrations of 10-3 10-4 and 10' mo1-r The dilutions, including the stock solution, are used in the assay (final concentrations in the reaction mixture: 3-10-3; 10-3; 3-10-4; 10 ; 3-10-5 10-5 3-10-6 and 10-6 mo1-r', respectively).

Procedure
At room temperature 0,075 ml and 0.025 ml test compound or reference compound solutions or vehicle are alternately pipetted into the wells of a microtiter plate and these solutions are diluted with 0.115 ml and 0.0165 ml TNP buffer, respectively. An aliquot of 0.030 ml S-2238 solution is added to each well and the plate is pre-heated and pre-incubated with shaking in an incubator (Amersham) for 10 min. at 37 °C. Following preincubation the hydrolysis of S-2238 is started by addition of 0.030 ml thrombin solution to each well. The plate is incubated (with shaking for 30 s) at 37 °C. Starting after 1 min of incubation, the absorbance of each sample at 405 nm is measured every 2 min. for a period of 90 min. using a kinetic microtiter plate reader (Twinreader plus, Flow Laboratories).
All data are collected in an IBM personal computer using LOTUS-
MEASURE. For each compound concentration (expressed in moll"'
reaction mixture) and for the blank the absorbance is plotted versus the
reaction time in min.
Evaluation of responses: For each final concentration the maximum absorbance was
calculated from the assay plot. The IC50-value (final concentration, expressed in µmo1-r" causing 50% inhibition of the maximum absorbance of the blank) was calculated using the logit transformation analysis according to Hafner et al (Arzneim.-Forsch./Drug Res, 1977; 27(11): 1871-3).


Il Anti-factor Xa assay
Activated Factor X (Xa) is a factor in the coagulation cascade. The anti-Xa activity of compounds of the present invention was assessed by measuring spectrophotometrically the rate of hydrolysis of the chromogenic substrate s-2222 exterted by Xa. This assay for anti-Xa activity in a buffer system was used to assess the IC50-value of the test compound.
In general the followed procedure and test conditions were analogous to those of the anti-thrombin assay as described above. Differences are indicated below.
Reference compound: benzamidine
Vehicle: TNP buffer.
Solubilisation can be assisted with dimethylsulphoxide, methanol, ethanol, acetonitrile or tert.-butyl alcohol which are without adverse effects in concentrations up to 1% (for DMSO) and 2.5% (for the other solvents) in the final reaction mbcture.
Technique Reagents*
3. S-2222 solution
One vial S-2222 (15 mg; Kabi Diagnostica, Sweden) is dissolved in 10 ml water to give a concentration of 1.5 mg-ml' (2 mmo1-1').
4. Xa solution
Bovine Factor Xa Human (71 nKatvial1; Kabi Diagnostica) is dissolved in 10 ml TNP buffer and then further diluted with 30 ml TNP buffer to give a concentration of 1.77 nKatml'.The dilution has to be fireshly prepared.
Procedure
Instead of the S-2238 solution (in anti-thrombin assay), the above S-2222
solution is added to each well in this assay.














Q is a spacer having a chain length of 10 to 70 atoms; and
Z is a negatively changed oligosaccharide residue comprising two to six monosaccharide units,
the charge being compensated by positively charged counterions;
or a pharmaceutically acceptable salt thereof or a prodrug thereof.
2. The compound of claim I, wherein Z is derived from an oligosaccharide which has per se
AT-III mediated anti-Xa activity.
3. The compound of claim 2, wherein Z is a pentasaccharide residue.


7. The compound of claim 6, wherein Q is selected from -[(CH2)20]5-(CH2)2-NH-C(0)-CH2-S-CH2-;
-[(CH2)20]5-(CH2)2-NH-C(0)-CH2-S-(CH2)2-[0(CH2)2]3-0-CH2-C(0)-NH-(CH2)4Sand -[(CH2)20]3-(CH2)2-NH-C(0)-1,4-phenylene-NH-C(0)-CH2-S-CH2-.

8. A pharmaceutical composition composing the compound of any one of claims 1 to 7 and pharmaceutically suitable auxiliaries.


Documents:

in-pct-2000-822-che abstract duplicate.pdf

in-pct-2000-822-che claims duplicate.pdf

in-pct-2000-822-che description (complete) duplicate.pdf

in-pct-2000-822-che-abstract.pdf

in-pct-2000-822-che-assignment.pdf

in-pct-2000-822-che-claims.pdf

in-pct-2000-822-che-correspondence others.pdf

in-pct-2000-822-che-correspondence po.pdf

in-pct-2000-822-che-description complete .pdf

in-pct-2000-822-che-form 1.pdf

in-pct-2000-822-che-form 26.pdf

in-pct-2000-822-che-form 3.pdf

in-pct-2000-822-che-form 5.pdf

in-pct-2000-822-che-form 6.pdf

in-pct-2000-822-che-pct.pdf


Patent Number 222541
Indian Patent Application Number IN/PCT/2000/822/CHE
PG Journal Number 47/2008
Publication Date 21-Nov-2008
Grant Date 14-Aug-2008
Date of Filing 13-Dec-2000
Name of Patentee N.V. ORGANON
Applicant Address KLOOSTERSTRAAT 6, NL-5349 AB OSS
Inventors:
# Inventor's Name Inventor's Address
1 BASTEN, JOHUMES ST. VICTORSTRAAT 41, NL-6654, AV AV AFFERDEN
2 EGBERTUS, MARIA ST. VICTORSTRAAT 41, NL-6654, AV AV AFFERDEN,
3 VAN BOECKEL, CONSTANT, ADRIAAN, ANTON MERCURIUSSTRAAT 32, NL-5345 LX OSS,
4 BUIJSMAN, ROGIER, CHRISTIAN ST AUTHONIUSSTRAAT 26, NL-5341 LD OSS,
5 DREEF TROMP, CORNELIA, MARIA SLUISKAMP 31-16, NL-6605 WIJCHEN,
PCT International Classification Number C07K9/00
PCT International Application Number PCT/EP99/04100
PCT International Filing date 1999-06-11
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 EP 9820203 1998-06-17 EUROPEAN UNION