Title of Invention

A METHOD FOR PURIFYING TYROSINE KINASE RECEPTOR RELATED POLYPEPTIDES AND PRODUCT OBTAINED THEREOF

Abstract This invention relates to a purification method, particularly for purifying tyrosine kinase receptor related polypeptides, and to products made by the method. The method comprises a method of producing tyrosine kinase receptor-related polypeptides, the method comprising expressing a tyrosine kinase receptor-related polypeptide in a recombinant expression system and separating expressed monomeric tyrosine kinase receptor-related polypeptide from multimeric form(s) of the expressed polypeptide in a separation step, the separation step allowing refolding of the expressed tyrosine kinase receptor-related polypeptide into a biologically active form.
Full Text Field to which the invention relates
This invention relates to a method for purifying polypeptides and to products obtained by
the method. In particular, though not exclusively, the invention relates to a method for
purifying polypeptides which have to fold before they are biologically active such as the
tyrosine kinase receptors TrkA, TrkB and TrkC and biologically active variants and
portions thereof (all referred to as "tyrosine kinase receptor-related polypeptides").
Background
The tyrosine kinase receptors TrkA, TrkB and TrkC bind neurotrophins. TrkA is
biologically active in that it binds nerve growth factor (NGF) with high affinity. It is also
biologically active in that it binds neurotrophin-3 (NT3) with high affinity. TrkB and TrkC
bind other neurotrophins. TrkB binds brain derived neurotrophic factor (BDNF) and
neurotrophin-4 (NT4) with high affinity. TrkC binds NT3 with high affinity. The
identification, cloning and sequencing of TrkB and TrkC are described in US6027927.
Each receptor molecule comprises a number of regions or domains. The
immunoglobulin-like domains (Ig) of the tyrosine kinase receptor molecule are of
particular interest in therapeutic applications. More particularly, as disclosed in the
applicant's co-pending patent application, WO99/53055, TrkAIg2 and variants, such as the
splice variant TrkAIg26, have therapeutic application.
There is a need to produce polypeptides derived from the tyrosine kinase receptors on a
large scale, particularly for therapeutic applications. Production of recombinant
polypeptides in bacterial expression systems is advantageous for several reasons,
particularly because relatively high yields of polypeptide can be obtained. Typically yields
can be ten times higher than in human cell systems.
However, the expressed polypeptides such as TrkAIg2, the second immunoglobulin-like
domain of TrkA, are difficult to work with in that they tend to be produced as a mixture of
monomer, dimer and aggregate (i.e. aggregated dimer which may include monomer
amongst the dimer) In particular in the case of TrkAIg2, but also in the cases of TrkBIg2
and TrkCIg2, only the monomer is, however, active and therefore therapeutically useful. As
discussed in Robertson A.G. S. et al (Biochemical and Biophysical Research
Communications 282 (1): 131-141 Mar 23 2001) dimers of TrkAIg2 are not able to bind
NGF and are not biologically active. It is likely that small amounts of dimer or aggregate
seed the production of more aggregate leading to a decrease in amount of biologically
active monomer. This is unusual, many proteins exist in an equilibrium between monomer,
dimer and even tetramer, (e.g. human growth hormone). The removal of dimer is crucial to
a long term stable preparation, which is a requirement for pharmaceutical formulation. Like
many proteins, correct conformation of the tyrosine receptor-related polypeptide is
important for biological activity. When expressed in a bacterial inclusion body the
polypeptide is folded, but in an incorrect biologically inactive conformation. After
expression in a recombinant system the polypeptide must be folded again to achieve that
correct conformation. This further folding after expression is sometimes referred to as
"refolding".
We are only aware of two other groups that have tried to make recombinant TrkAIg2 in
bacterial cells. Ultsch et al (J Mol Biol (1999) 290, 149-159) made TrkAIg2, TrkBIg2 and
TrkCIg2. They made the TrkAIg2 as soluble protein, rather than in inclusion bodies, purified
it by ion exchange, then hydrophobic interaction, ion exchange again and gel filtration. The
gel filtration step here was not to allow refolding of the polypeptide - it would be assumed
that the polypeptide was already correctly folded as it was in soluble form. TrkBIg2 and
TrkCIg2, although expressed in the same way, were insoluble. They were solubilised in
urea and dialysed to allow refolding and further purified by ion exchange. Solution of
crystal structures of the resulting TrkAIg2, TrkBIg2 and TrkCIg2 revealed strand swapped
dimers i.e. dimers where strand A of one monomer is paired with strand B of another
monomer (see the accompanying Fig. 1). Fig. 1 shows a strand" swapped dimer consisting
of two TrkAIg2 monomers in which the A strand from monomer X unfolds and binds with
the B strand from monomer Y. Conversely the A strand from monomer Y unfolds and
binds with the B strand from monomer X. These are inactive. In their discussion it was
indicated that none of the dimers produced were capable of binding to the natural ligands,
in contrast to the domains expressed as immunoadhesins in 293 cells (Urfer et al (1995)
EMBO Journal 14, 12, p2795-2805). The apparent NGF binding activity of the TrkAIg2 -
immunoadhesin molecule constructs in animal cells was probably due to the large
immunoadhesion scaffold (the Fc portion of IgG) holding the TrkAIg2 region in a correct
conformation, which would lead to extensive glycosylation, and would also be likely to
significantly affect the binding of the construct to other molecules.
Windisch et al (Windisch, J M. et al (1995) J. Biol Chem. 270 47 p28133-28138) produced
TrkA derivatives including TrkAIg2 as maltose binding protein fusion constructs which
were inactive and therefore would not be suitable for therapeutic use. Maltose binding
protein constructs are used with "difficult" proteins. It was assumed that the constructs had
folded correctly but it is now apparent that this was not the case.
Wiesmann et al (Nature, 9th September 1999 401, 184-188) could only produce a
co-crystal of NGF and TrkAIg2 by adding together NGF and TrkAIg1,2 i.e. a polypeptide
comprising both Ig-like domains of TrkA. Over a period of many months the TrkAIg1
region was 'nibbled' away leaving only the TrkAIg2 region bound to the NGF. Such a
method is not suitable for commercial level production of tyrosine kinase receptor related
polypeptides.
One method of producing biologically active portions and derivatives of tyrosine kinase
receptor-related polypeptides in inclusion bodies in Escherichia coli is disclosed in Holden
et al (Holden, P.H. et al NatureBiotechnology, 15, July 1997 page 668- 672). This method
involves a dialysis step, after extraction of the polypeptide from the inclusion bodies, to
allow the expressed polypeptide to refold, and results in a yield of only about 16 mg/litre of
polypeptide. WO99/53055 discloses a similar method of purifying portions and derivatives
of TrkA, including TrkAIg2, from E. coli inclusion bodies in which the extracted
polypeptide is also dialysed. This method leads to a yield of about ~ 50 mg/litre. This
method produces a product which is relatively unstable, having to be snap frozen after
production, and before it can be used further.
As noted above, the methods described in Ultsch et al, WO99/53055 and in Holden et al
involve a dialysis step. Dialysis is relatively disadvantageous in that it requires large
amounts of dialysis buffer in order to limit the concentration of polypeptide (usually to
about 0.1 mg/ml) and to limit aggregation of the polypeptide. The amount of dialysis buffer
involved precludes the use of a method of producing tyrosine kinase receptor-related
polypeptides involving dialysis on a commercially-useful scale.
It is an object of the present invention to provide a method of producing polypeptides,
particularly tyrosine kinase receptor-related polypeptides, which provides improved yields
compared to prior art processes. It is a further object of the present invention to provide a
method which provides a product with improved stability compared to prior art processes.
Summary of the invention
According to one aspect of the invention there is provided a method of producing tyrosine
kinase receptor-related polypeptides, the method comprising expressing a tyrosine kinase
receptor-related polypeptide in a recombinant expression system and separating expressed
monomeric tyrosine kinase receptor-related polypeptide from multimeric form(s) of the
expressed polypeptide in a separation step, the separation step allowing refolding of the
expressed tyrosine kinase receptor-related polypeptide into a biologically active form.
The method is advantageous over known processes for several reasons. First, the method
produces significantly higher yields than known processes. Second, the method is scalable
allowing production of polypeptide at commercially useful levels. Third, the method does
not require a separate dialysis-based refolding step. Dialysis requires large amounts of
expensive dialysis buffer since it requires refolding at low polypeptide concentrations, and
a lengthy period of time for refolding. Methods involving a dialysis step require a recovery
step for capture of the polypeptide. This can be done for instance by ion exchange or
affinity separation. The use of ion exchange requires increased levels of NaCl to elute
product; this is disadvantageous in that it causes further aggregation of the polypeptide.
The use of affinity separation for example using a His tag on a nickel chelating column also
requires relatively high NaCl levels and elution with irnidazole requires gel filtration to
remove. Fourth, the process is much quicker than prior art processes involving dialysis,
which is usually done overnight. Fifth, the product of the method is more stable. Rather
than having to be snap frozen immediately after production, it can be kept normally
refrigerated (at about 4°C) and is biologically active for at least three months. As the
product has lower dimer levels there is less tendency for aggregation seeded by dimers to
take place. Sixth, the product can be produced at higher concentrations (up to 650µM)
without strand swap dimers being produced. Seventh, as the polypeptide product is not in
contact with urea for the lengthy periods required during a dialysis procedure it is less
likely to be amidated. Amidation can affect biological activity. It may also make it more
difficult to couple the polypeptide to matrices using amine coupling methods. This makes
products of the method of the present invention more useful in certain applications such as
biosensors.
The tyrosine kinase receptor may be native TrkA, TrkB, TrkC; or a biologically active
homologue, variant, portion of those receptors or a construct including a homoiogue,
variant, or portion thereof. Preferably the polypeptide is selected from TrkAIg2 and
TrkBIg2. Particularly preferred polypeptides for production by the method of the present
invention are the Ig2 subdomains of the TrkA, TrkB, and TrkC receptors. Most preferably
the polypeptide is TrkAIg2 or TrkAIg2.6.
Preferred constructs may include additional C terminal sequence from the corresponding
native receptor.
The polypeptide may be expressed with a histidine tag sequence. The tyrosine kinase
sequence is preferably human. The tyrosine kinase receptor-related polypeptide may be
expressed in insoluble form. Preferably the tyrosine kinase receptor-related polypeptide is
expressed in bacterial inclusion bodies. The multimeric forms of the polypeptide may
include dimers. The polypeptide is preferably able to bind a ligand of the corresponding
native tyrosine kinase receptor with high affinity.
The separation step preferably involves gel filtration. The separation step is preferably
carried out at a salt concentration between 0 mM and 500 mM, and more preferably above
25 mM and below 200 mM, most preferably at a salt concentration of about 100 mM, for
example in the range 80 mM to 120 mM. The gel used in the gel filtration step is preferably
able to separate molecules having a molecular weight of about 12 to 40 kDa. The gel may
be for example Sephacryl 200, SuperDex 75 or SuperDex 200.
The separation step is preferably carried out at an alkaline pH. Preferably, the separation
step is carried out at a pH below one where denaturation occurs. For example, the step may
be carried out at typically between pH 8 and 9. Most preferably, the filtration step is
carried out at about pH 8.5. This is unexpected in the case of TrkA as TrkAIg2 has a
calculated P; of between 4.6 and 6.0 dependant on the program used for the calculation.
TrkAIg2 has a high level of ß sheet and most proteins like this aggregate and precipitate
near their pI. TrkAIg2, however, precipitates and aggregates at pH's around physiological
pH, and significantly different from its pI and at salt concentrations that normally maintain
such proteins in solution.
In a preferred arrangement, polypeptide is eluted from the gel filtration step at a flow rate
of about 2.5 ml/min, and monomer is collected after about 93 minutes. This will, however,
vary according to the apparatus and conditions under which it is operated. Preferably, the
polypeptide is produced in a bacteria-based expression system.
According to a preferred aspect of the invention there is provided a method of purifying
recombinant TrkAIg2 or TrkAIg2.6 from inclusion bodies in a bacterial expression system in
which monomeric TrkAIg2 is separated from a mixture including monomeric and
multimeric TrkAIg2 by a gel filtration step and allowed to refold into a biologically active
form. Typically, the multimeric TrkAIg2 will comprise dimeric TrkAIg2.
The invention also provides a stable preparation of TrkAIg2 obtained, or obtainable, by a
method according to the invention and comprising less than 20% of TrkAIg2 dimer or
dimer aggregate, more preferably less than 1% of TrkAIg2 dimer or dimer aggregate, most
preferably less than 0.1% of TrkAIg2 dimer or dimer aggregate.
The invention also provides a stable preparation of TrkAIg2 obtained, or obtainable, by a
method according to the invention and comprising more than 80% TrkAIg2 monomer, more
preferably more than 99% TrkAIg2 monomer, most preferably 100% TrkAIg2 monomer.
Preferably, the monomer is substantially all in a biologically active form.
The invention also provides a preparation of TrkAIg2.6 obtained, or obtainable, by a
method according to the invention and comprising less than 20% of TrkAIg2.6 dimer or
dimer aggregate, more preferably less than 1% of TrkAIg2.6 dimer or dimer aggregate, most
preferably less than 0.1% of TrkAIg2 dimer or dimer aggregate.
The invention also provides a stable preparation of TrkAIg2.6 obtained or obtainable, by a
method according to the invention and comprising more than 80% TrkAIg2.6 monomer,
more preferably more than 99% TrkAIg2.6 monomer, most preferably 100% TrkAIg2.6
monomer. Preferably, the monomer is substantially all in a biologically active form.
The invention also provides a stable preparation of TrkBIg2 obtained, or obtainable, by a
method according to the invention comprising less than 20% of TrkBIg2 dimer or dimer
aggregate, more preferably less than 1% of TrkBIg2 dimer or dimer aggregate, most
preferably less than 0.1% of TrkBIg2 dimer or dimer aggregate.
The invention also provides a stable preparation of TrkBIg2 obtained, or obtainable, by a
method according to the invention comprising more than 80% TrkBIg2 monomer, more
preferably more than 99% TrkBIg2 monomer, most preferably 100% TrkBIg2 monomer.
Preferably, the monomer is substantially all in a biologically active form.
The invention also provides a stable preparation of TrkCIg2 obtained, or obtainable, by a
method according to the invention and comprising less than 20% of TrkCIg2 dimer or
dimer aggregate, more preferably less than 1% of TrkCIg2 dimer or dimer aggregate, most
preferably less than 0.1% of TrkCIg2 dimer or dimer aggregate.
The invention also provides a stable preparation of TrkCIg2 obtained, or obtainable, by a
method according to the invention and comprising more than 80% TrkCIg2 monomer, more
preferably more than 99% TrkCIg2 monomer, most preferably 100% TrkCIg2 monomer.
Preferably, the monomer is substantially all in a biologically active form.
According to another aspect of the invention there is provided a method of producing
immunoglobulin-like polypeptide monomers from a mixture of monomeric and multimeric
forms of the polypeptide, the method comprising expressing the polypeptide in a
recombinant expression system and separating polypeptide monomers from multimeric
forms of the polypeptide in a separation step, the separation step allowing the polypeptide
to refold to a biologically active form. Thus the invention provides a method of purifying
immunoglobulin-like polypeptides which has some or all of the advantages described
above. The separation step preferably includes gel filtration.
Brief Description of the drawings
Methods and products in accordance with the invention will now be described, by way of
example only, with reference to the further accompanying Figures 2 to 22 in which:
Fig 2 shows the amino acid sequences of (A) TrkAIg2 and TrkAIg2.6; (B) TrkBIg2 truncated
and full length forms (in bold; pET15b sequences (MGSSHHHHHH SSGLVPRGSHM) in
unbolded form); and (C) TrkCIg2 truncated and full length forms (in bold; pET15b
sequences (MGSSHHHHHH SSGLVPRGSHM) in unbolded form);
Fig. 3 is a overlap of traces from an FPLC machine illustrating comparative experiments
with a prior art dialysis method and a method in accordance with the invention;
Fig. 4 is a series of traces illustrating the results of experiments in which pH was altered;
Fig. 5 is a series of traces illustrating comparative experiments with volume of dialysis
buffer;
Fig. 6 shows results of mass spectrometry experiments on TrkAIg2 6His and TrkAIg2.6 6His
produced by the invention;
Fig. 7 illustrates the results of binding activity studies for TrkBIg2 6His, with A: BDNF and
B: NT4;,
Fig. 8 illustrates the results of binding activity studies with TrkAIg26His with NGF;;
Fig. 9 illustrates the results of binding activity studies with TrkAIg2.66His with NGF;
Fig. 10 shows results of mass spectrometry experiments on TrkBIg26His produced by the
invention;
Fig. 11 shows results of PC 12 cell neurite outgrowth bioassay using TrkAIg2 6His;
Fig. 12 shows result of mass spectrometry experiments on TrkCIg2 6His produced by the
invention;
Fig. 13 illustrates the results of binding activity studies with TrkCIg2 6His with NT-3;
Fig. 14 illustrates the predicted mRNA structure of TrkAIg2 6His;
Fig. 15 illustrates the predicted mRNA structure of TrkAIg2 noHis;
Fig. 16 illustrates an example of mutations required to facilitate expression of
TrkAIg2noHis;
Fig. 17 illustrates the predicted mRNA structure for the mutant sequence shown in Fig. 16;
Fig. 18 shows an SDS-PAGE gel showing cell extracts from E. coli expressing the
pET24a-TrkAIg2 noHis mutant sequence shown in Fig. 16;
Fig. 19 shows results of mass spectrometry experiments on TrkAIg2 noHis produced by the
invention;
Fig. 20 shows results of PC 12 cell neurite outgrowth bioassay using TrkAIg2 noHis;
Fig. 21 illustrates examples of mutations required to facilitate expression of TrkBIg2noHis;
and
Fig. 22 illustrates examples of mutations required to facilitate expression of TrkCIg2noHis.
Definitions:
"Polypeptide": This term embraces proteins i.e. naturally occurring full length biologically
active polypeptides.
TrkAIg2": is a polypeptide having the amino acid sequence shown in bold in Fig. 2A
(whether with or without the additional six amino acid residues underlined which lead to
the variant TrkAIg2.6) and homologues (for example as a result of conservative substitutions
of one or more amino acid residues in the sequence) or variants including sequences to
enhance expression and/or purification such as the his tag and thrombin cleavage sequence
shown in unbolded form in Fig. 2A.
"TrkBIg2" and "TrkCIg2" have corresponding meanings with reference to the sequences
shown in Fig. 2B and 2C respectively.
"TrkAIg2 6His" represents variants including the His tag and "TrkAIg2 noHis" represents
variants not including the His tag. Similar terms apply to corresponding variants of TrkB
and TrkC and proteins thereof.
Specific Description
Production of histidine-tagged Trklgs
Production of recombinant TrkAIg2 6His and TrkAIg2.6 6His polypeptide
Recombinant TrkAIg26His was produced in E. coli BL21 (DE3) cells using the method
described in WO99/53055 in the section headed "Expression of TrkAIg1,2, TrkAIg1 and
TrkAIg2" and incorporating a 6-histidine tag to the N-terminus of the polypeptide as shown
in Fig. 2A. Recombinant TrkAIg2.6 6His was prepared in a similar manner.
Purification and refolding of TrkAIg2 6His polypeptide
The harvested cells were resuspended in 10% glycerol, frozen at -70°C in liquid nitrogen
and the resulting pellet was passed three times through an XPress (AB Biox). The extract
was centrifuged at 10,000 rpm, 4°C for 30 min to pellet the insoluble inclusion bodies
containing the recombinant polypeptide.
The inclusion bodies were washed in 500 ml 1% (v/v) Triton X-100, 10 mM TrisHCl
pH8.0, 1mM EDTA followed by 500 ml 1M NaCl, 10 mM TrisHCl pH 8.0, 1mM EDTA
and finally 10 mM TrisHCl pH8.0, lmM EDTA.
The inclusion bodies were then solubilised in 20 mM Na Phosphate, 30 mM Imidazole, 8M
Urea (pH 7.4) and clarified by centrifugation. 6M Guamdinium may also be used in place
of 8M urea throughout.
The resulting mixture was loaded on a 5 ml HisTrap column(Pharmacia), and washed with
50 ml 20 mM NaPhosphate, 30 mM Imidazole, 8M Urea pH 7.4. The purified TrkAIg26His
was eluted with 25 ml 20 mM NaPhosphate, 300 mM Imidazole, 8M Urea (pH7.4).
In order to allow the purified recombinant TrkAIg26His polypeptide to refold, the eluant of
the previous step was then applied to a SuperDex 200 gel filtration column, and
equilibrated in 20 mM NaPhosphate, 100 mM NaCl, at pH 8.5. The column had a height of
65cm, width 2.6cm and volume of 345ml when pre-packed by the manufacturer. The flow
rate at maximum pressure was 2.5 ml/min.
Any aggregate (i.e. dimer aggregates) eluted in the void volume. Dimer was eluted after
about 80 min and monomer eluted after about 93 min. The elution time of a protein will be
dependent on dimensions of column and is dependent on its size. This is described by the
following formula:
R = VO/Ve
where R is retention coefficient of a protein, Ve is the volume at which the protein is
eluted, VO is void volume
where Ve = 232.5ml VO is 122ml
122/232.5 = 0.53
TrkAIg2 6His monomer on a SuperDex 200 gel has a retention coefficient of 0.53.
By way of comparison the polypeptide was also folded by dialysis first against 20 mM
TrisHCl, 50 mM NaCl, pH 8.5, recaptured on a His Trap column and eluted with 25 ml 20
mM NaPhosphate, 300 mM Imidazole, 8M Urea pH 7.4.
Purification traces from the Biocad Sprint FPLC (Biocad) which show elution of monomer;
dimer and aggregates of TrkAIg26His under various conditions were prepared. Figure 3
shows an overlay trace comparing elution of TrkAlg26His with refolding by dialysis
("Dialysis") and with refolding on a column in a method according to the invention
("SuperDex"). It will be seen that the method of the invention produces higher levels of
monomer compared to the prior art process.
The splice variant TrkAIg2.66His was prepared and purified in a similar manner.
Effect of pH on elution of TrkAIg26His
TrkAIg26His was expressed in E, coli as described above. Purified inclusion bodies were
solubilised in 20 mM Na Phosphate, 30 mM Imidazole, 8M Urea pH 7.4 and clarified by
centrifugation. The resulting mutant was affinity purified on HisTrap column and eluted
with 25 ml 20 mM NaPhosphate, 300 mM Imidazole, 8M Urea pH 7.4. The eluted
TrkAIg26His was applied to SuperDex 200 gel filtration column (Pharmacia) and
equilibrated in 20 mM NaPhosphate, 100 mM NaCl, pH 8.5. The flow rate was 2.5
ml/min. The time taken for elution is determined by size of protein. Peaks of monomer,
dimer and aggregate are indicated at approximately 93 minutes, 80 minutes and 50 minutes
respectively. The results are given in Fig. 4 whichshows the results of elution at pH7.4, 8.0,
8.5 and 9.0. The results indicate that pH 8.5 was best with the greatest yield, lowest amount
of aggregate, and highest levels of monomer.
Comparative Example: Separation of TrkAIg26His monomer, dimer and aggregate
with refold by dialysis. Amount of dialysis buffer required. Subsequent analysis by
elution from SuperDex 200.
TrkAIg26His was expressed in E. coli. Purified inclusion bodies were solubilised in 20
mM NaPhosphate, 30 mM Imidazole, 8M Urea pH 7.4 and clarified by centrifugation. The
solution was affinity purified on HisTrap column and eluted with 25 ml 20 mM
NaPhosphate, 300 mM Imidazole, 8M Urea pH 7.4. TrkAIg26His was folded by dialysis
(using 1 litre, 2 litres or 4 litres) overnight against 20 mM TrisHCl, 50 mM NaCl, pH 8.5,
recaptured on a HisTrap column and eluted with 25 ml 20 mM NaPhosphate, 50 mM
EDTA, 8M Urea pH 7.4. Final analysis was using a SuperDex 200 gel filtration column
equilibrated in 20 mM NaPhosphate, 100 mM NaCl, pH 8.5. Flow rate was 2.5 ml/min.
2-4 litres were required for washing. 4 litres gave the highest yield of monomer: This
shows how large volumes of buffer are needed if dialysis is to be used for refolding of the
expressed polypeptide.
Results are shown in Fig. 5.
Characterisation of TrkAIg26His and TrkAIg2.66His Produced by Method of the
Invention
The expressed TrkAIg26His (A) and TrkAIg2.66His (B) polypeptides were subjected to
MALDITOF mass spectrometry and the results are shown in Fig. 6. The molecular mass of
the polypeptides was determined using a PE Biosystems Voyager-DE STR Matrix-Assisted
Laser Desorption Time-of-Flight (MALDITOF) mass spectrometer with a nitrogen laser
operating at 337nm. The matrix solution was freshly prepared sinapinic acid at a
concentration of lmg/100µl in a 50:50 mixture of acetonitrile and 0.1% trifluoroacetic
acid. 0.5µl of sample and matrix were spotted onto the sample plate. The sample was
calibrated against Calmix 3 (PE Biosystems) run as a close external standard. The spectrum
was acquired over the range 5000-80,000Da, under linear conditions with an accelerating
voltage of 25,000V, an extraction time of 750nsecs and laser intensity of 2700.
The molecular weight of TrkAIg26His was found to be 15,717.96 Da. This is almost
exactly as predicted by theoretical calculation of the molecular weight (15716.3 Da, after
loss of the N-terminal methionine, which we have previously found to be removed in
proteins incorporating the 6 histidine tag from the expression vector pET15b).
The molecular weight of TrkAIg2.66His was found to be 16,575.3 Da. This is almost
exactly as predicted by theoretical calculation of the molecular weight (16,574.4 Da).
Stability
TrkAIg26His and TrkAIg2.66His produced as described above has remained stable when
kept at 4°C for three months and has retained its biological activity.
Improvements in stability may be achieved using conventional additives such as glycerol.
Biological activity of TrkAIg26His produced by the method of the invention
i Guinea pig hind limb pain responses
Biological activity of TrkAIg2 6His produced by the method of the invention was tested in
guinea pigs (Djouhri, L. et al (2001) J. Neuroscience 21 p8722-8733). CFA (Complete
Freund's Adjuvant) was injected into the hind limb and knee of guinea pigs. This causes
inflammation which leads to an increase of NGF levels. This makes the animal more
susceptible to feeling pain. Intracellular recordings were made from the cell bodies of L6
(lumbar), and S1 (sacral) DRG neurons with glass microelectrodes and action potentials
were evoked by stimulation of DRG with a pair of platinum electrodes. The recordings
were made 1, 2 and 4 days after CFA administration. The C and AS fibres are nociceptive
- they transmit pain signals to the brain, a and ß fibres do not. Spontaneous firing of
nociceptive neurons without outside stimulation is thought to be responsible for
inflammatory and neuropathic pain in humans.
TrkAIg26His was injected on days 2, 3 and 4 with 0.45µg into hind limb and knee on
guinea pig. Adding TrkAIg26His, which sequesters the endogenous NGF, abolished
CFA-induced increases in following frequency and in spontaneous firing. This meant
complete cessation of abnormal pain.
TrkAIg26His was therefore able to inhibit pain response in CFA induced pain fibre firing in
guinea pigs.
ii PC12 cell bioassays
Biological activity of TrkAIg26His produced by the method of the invention was tested by
PC 12 neurite outgrowth bioassay. PC 12 cells are a rat phaeochromocytoma cell line which
grow neurites in response to the presence of NGF, which binds receptors present on the cell
surface. PC 12 cells were plated out at 2x104 cells per well in complete DMEM medium
(including 100 units/ml penicillin, 100 µg/ml streptomycin, 10% horse serum, 10% Foetal
Calf Serum (FCS) and 2 mM glutamine) on collagen-coated 24-well plates. NGF was
added at Ing/ml and TrkAIg26His was added at varying concentrations. Results are shown
in Figure 11, photographs of neurite outgrowth after 48 hours. Cells were fixed before
photographing. Fig. 11A shows neurite outgrowth with 1ng/ml NGF and Fig. 11B shows
no neurite outgrowth when 1.25µm TrkAIg26His is added.
TrkAIg26His was therefore able to prevent neurite growth in response to NGF in the PC 12
cell line.
Sub-cloning of the TrkBIg26His domain
The TrkBIg26His protein comprises residues 286 to 430 of the mature protein, and has a
further 21 residues at the NH2 terminus which constitute the histidine expression tag and
associated thrombin cleavage sequence. cDNA coding for the TrkBIg26His domain was
PCR amplified from XZAP-pBluescriptllSK(-)/TrkB, a non-catalytic form of human TrkB
cloned by us (Allen et al (1994) Neuroscience 60 p825-834). Primers (MWG Biotech)
incorporated a Ndel site in the forward primer
(CGCATATGGCACCAACTATCACATTTCTCGAATCTC), and a BamHI site in the
reverse primer:
(GCGGATCCCTATTAATGRRCCCGACCGGTTTTATC).
The PCR product was subcloned into pET15b (Novagen), using Ndel and BamHI sites, to
create the expression vector pET15b-TrkBIg2 6His.
A truncated version of TrkBIg26His, shown in Fig 2B, was also produced in exactly the
same way but using the amino acids 286-383. This form was co-crystallised with its ligand
NT4 and an X-ray crystal structure solved.
Production of recombinant TrkBIg2 6His polypeptide
Electro-competent E. coli BL21 (DE3) cells were transformed with pET15b-TrkBIg2, and
expression was carried out in accordance with the pET (Novagen) manual. After
transformation, E. coli cell lysates were analysed by SDS-PAGE for expression of the 18.5
kDa protein. TrkBIg26His protein was expressed at high levels in the urea-soluble fraction,
but not in the other fractions. 2ml of 2YT broth (containing 200µg/ml ampicillin) was
inoculated with a colony and grown at 37°C to mid log phase. This was used to inoculate
50ml of 2YT broth (containing 200 µg/ml ampicillin), which was grown at 37°C to mid log
phase. This was used to inoculate 5 litres of 2YT broth (containing 200 µg/ml ampicillm),
which was grown to an optical density of 1.0 at 600 nm. 1mM IPTG was added to induce
protein expression and cells were grown overnight at 37°C. The harvested cells were
resuspended in 10% glycerol and frozen at -80°C (8 pellets). Pellets were lysed by passing
3 times through an Xpress, then washed with 20 mM sodium phosphate buffers (pH 8.5)
containing, in succession, 0.1M NaCl, 1% Triton X-100, and finally 1M NaCl. This
removed all soluble matter, leaving inclusion bodies containing insoluble protein.
Refolding of TrkBIg26His polypeptide
Insoluble TrkBIg26His protein contained in the inclusion bodies was released from the cells
with an Xpress, and washed to remove soluble matter. The purified inclusion bodies were
solubilised in 8M urea buffer (20 mM sodium phosphate, pH 8.5, 1mM
ß-mercaptoethanol), with a "Complete" proteinase inhibitor cocktail tablet (Roche) and
incubated at room temperature for 2 hours with gentle shaking. 6M Guanidinium may be
substituted for 8M urea. TrkBIg26His protein was purified on a HisTrap nickel column
(Pharmacia), under reducing conditions (20 mM sodium phosphate, pH 8.5, 8M urea, 10
mM imidazole), and eluted using 300 mM imidazole. Refolding took place under
non-reducing conditions (20 mM sodium phosphate, pH 8.5, 100 mM NaCl) on a
SuperDex 200 gel-filtration column (Pharmacia). Fractions from the peak corresponding to
a molecular weight of approximately 18.5 kDa were pooled; these contained TrkBIg26His
monomer.
Characterisation of TrkBIg26His produced by Method of the Invention
The molecular mass of TrkBIg26His was determined using a PE Biosystems Voyager-DE
STR MALDITOF mass spectrometer, with a nitrogen laser operating at 337nm. The
matrix solution was freshly prepared sinapinic acid at a concentration of 1mg/100 µl in a
50:50 mixture of acetonitrile and 0.1% trifluoroacetic acid. 0.5µl of sample and matrix
were spotted onto the sample plate. The sample was calibrated against Calmix 3 (PE
Biosystems) run as a close external standard. The spectrum was acquired over the range
5000-80,000 Da, under linear conditions with an accelerating voltage of 25,000V, an
extraction time of 750 ns and a laser intensity of 2700. Results are shown in Fig. 10.
The molecular weight of TrkBIg26His was found to be 18,451.7 Da. This is almost exactly
as predicted by theoretical calculation of the molecular weight (18,449.1 Da).
Sub-Cloning of recombinant TrkCIg26His domain
The TrkCIg26His protein comprises residues 300 to 399 of the mature protein, and has a
further 21 residues at the NH2 terminus which constitute the histidine expression tag and
associated thrombin cleavage sequence. cDNA coding for the TrkCIg26His domain was
PCR amplified using a forward primer which incorporated a Ndel site
(CGCATATGACTGTCTACTATCCCCCAC) and a reverse primer which incorporated a
BamH1 site (GCGGATCCTTATCAGGGCTCCTTGAGGAAGTGGC). The PCR
product was subcloned into pET15b (Novagen) using Ndel and BamHl restriction sites, to
create the expression vector pET15b-TrkCIg26His.
Production of recombinant TrkCIg26His polypeptide
Electrocompetent E. coli BL21 (DE3) cells were transformed with pET15b-TrkCIg26His
and expression was carried out in accordance with pET (Novagen) manual. After
transformation E. coli lysates were anaylsed by SDS-PAGE for expression of the 13.8kDa
protein. TrkCIg26His protein was expressed at high levels in the urea-soluble fraction but
not in other fractions. 2ml of 2YT broth (containing 200 µg/ml ampicillin), was inoculated
with a colony which was grown at 37°C to mid log phase. This was used to inoculate 50ml
of 2YT broth (containing 200 µg/ml amplicillin) which was grown at 37°C to mid log
phase. This was used to inoculate 5 litres of 2YT broth (containing 200 µg/ml ampicillin),
which was grown to an optical density of 1.0 at 600nm. 1mM IPTG was added to induce
protein expression and cells were grown overnight at 37°C. The harvested cells were
resuspended in 10% glycerol and frozen at -80°C (8 pellets). Pellets were lysed by passing
3 times through an Xpress, and then washed with 20mM sodium phosphate buffer (pH8.0)
containing, in succession, 0.1M NaCl, 1% Triton X-100, and finally 1M NaCl. This
removed all soluble matter, leaving inclusion bodies containing insoluble protein. All
washes were at 4°C.
Refolding of TrkCIg26His polypeptide
Insoluble TrkCIg26His protein contained in the inclusion bodies was released from the cells
with Xpress, and washed to remove soluble matter. The purified inclusion bodies were
solubilised in 8M urea buffer (20mM sodium phosphate pH 8.0, 1mM p-mercaptoethanol)
and incubated at room temperature for 2 hours with gentle shaking. 6M Guanidinium may
be substituted for 8M urea. TrkCIg26His protein was purified on a HisTrap nickel column
(Pharmacia) in 20mM sodium phosphate, pH 8.0, 8M urea, 10mM imidazole, 1mM
p-mercaptoethanol and eluted using 300mM imidazole. Refolding was in 20mM sodium
phosphate, pH 8.0, 100mM NaCl, 1mM p-mercaptoethanol on a SuperDex 200 gel
filtration column (Pharmacia). Fractions from the peak corresponding to a molecular
weight of approximately 13.8kDa were pooled. These contained TrkCIg26His monomer.
The retention coefficient of TrkCIg26His is 0.51.
Characterisation of TrkCIg26His produced by method of the invention
The molecular mass of TrkCIg26His was determined using a PE Biosystems voyager-DE
STR MALDITOF mass spectrometer, with a nitrogen laser separating at 337 nm. The
matrix solution was freshly prepared sinapinic acid at a concentration of 1 mg/100µl in a
50:50 mixture of acetonitrile at 0.1% trifluoracetic acid. 0.5 µl of sample and matrix were
spotted onto the sample plate. The sample was calibrated against Calmix 3 (PE
Biosystems) run as a close external standard. The spectrum was acquired over the range
5000-80,000 Da, under linear conditions with an accelerating voltage of 25,000V, an
extraction time of 750ns and a laser intensity of 2700. Results are shown in Fig. 12.
The molecular weight of TrkCIg26His was found to be 13,681.9 Da. This is almost exactly
as predicted by a theoretical calculation of the molecular weight (13,685.3 Da) taking into
account loss of the N-terminal methionine, which we have previously found to be removed
in proteins incorporating the 6 histidine tag from the expression vector pET15b.
Activity studies: Binding activity of TrkAIg26His, TrkAIg2.66His, TrkBIg26His and
TrkCIg26His
The resulting monomeric recombinant TrkIg2 were shown to bind the natural ligands of the
respective full length receptors with similar affinity to the wild type receptor i.e. this may
be expected to be biologically active. In contrast strand swapped dimeric TrkBIg26His
would be biologically inactive.
The ability of TrkIg2 domains to bind to their respective ligands was measured using
plasmon surface resonance with a BiaCore system (BiaCore). TrkIg2 was bound to the
matrix of a CM5 chip by amine coupling.
Binding activity of TrkIgs. Surface plasmon resonance
i. TrkBIg26His
BDNF was passed over the chip at 0.1-25nM. Association and dissociation rates were
estimated according to a 1:1 Langmuir binding" model, giving a KD of 790pM. NT-4 was
passed over the chip at 1-100nM. Association and dissociation rates were estimated
according to a 1:1 Langmuir binding model, giving a KD of 260pM. Results are shown in
Fig. 7. Fig. 7A shows the results of experiments with BDNF at 0.1, 0.2, 0.5, 1,2, 5, 10 and
25nM (all duplicate). Association and dissociation were fitted to a 1:1 Langmuir model,
giving a KD of 790pM (Chi2 = 4.39).
Fig. 7B shows the results of experiments with NT-4 at 1, 5, 25, 50, 75 and 100nM (all
duplicate). Association and dissociation were fitted to a 1:1 Langmuir model, giving a KD
of260pM (Chi2 = 2.85).
ii. TrkAIg26His
NGF was passed over the chip at 0.1-100nM. Association and dissociation rates were
estimated according to a 1:1 Langmuir binding model, giving a KD of 92.6pM. The results
are shown in Fig. 8.
iii. TrkAIg2.66His
NGF was passed over the chip at 0.1-100nM. Association and dissociation rates were
estimated according to a 1:1 Langmuir binding model, giving a KD of 79.2 pM. Results
are shown in Fig. 9. This is a very high affinity and commensurate with known
characteristics of the biological membrane bound wild type receptor.
Djouhri, L. et al (supra) indicates TrkAIg26His is active in vivo to prevent abnormal fibre
firing of noiceptive neurons.
iv. TrkCIg26His
NT-3 was passed over the chip at 0.1-100 nM. Regeneration was with 10 µl 10 mM
glycine, pH 1.5. Association and dissociation rates were estimated according to a 1:1
Langmuir binding model, giving KD of 200 urn. The results are shown in Fig. 13.
Production of non-histidine-tagged TrkAIgs
Cloning of TrkAIg2 noHis
TrkAIg2 was cloned into pET24a for the expression of TrkAIg2 without the histidine tag
(TrkAIg2 noHis). Without modification this does not express protein.
It is known that secondary structure in the rnRNA transcript can interfere with the AUG
translation initiation codon and/or the ribosome binding site. Using the software MFOLD
(http://bioweb.pasteur.fr/seqanal/mterfaces/mfold.html) to investigate the secondary
structure it was seen that the transcriptiori start site was not ideal for expression. Figure 14
shows the predicted mRNA structure for TrkAIg2 6His in pET15b. The mRNA coding for
the 6His tag is outlined, as is the ribosome binding site (RBS) and the codon for a proline
residue (PRO). Figure 15 shows the predicted mRNA structure of TrkAIg2 noHis in
pET24a. It can be seen that the initiation site is much less accessible than in the 6His
version. Similar restrictions also arise in predicted structures of TrkBIg2noHis and
TrkCI2noHis.
Using computer software to predict the resulting mRNA structures, various silent
mutations were introduced into the DNA structure of TrkAIg2 noHis to allow access to the
RBS. Figure 16 shows an example of a resulting DNA sequence, compared with the
wild-type. Mutated bases are marked bold. The resulting mRNA-structure predicted by
MFOLD is shown in Figure 17. Examples of suitable mutated sequences for TrkBIg2noHis
are shown in Figure 21 and for TrkCIg2noHis in Figure 22.
TrkAIg2 was amplified by PCR from the pETl 5b-TrkAIg26His plasmid using the forward
primer GGAATTCCATATGCCTGCTTCAGTACAATTACACACGGCGGTC which
incorporates mutated bases and reverse primer
CCGCTCGAGTTATCATTCGTCCTTCTTCTCCACCGGGTCTCCA. Primers include
sites for Ndel and XhoI respectively at the 5' and 3' of TrkAIg2noHis. Between 100-1000
pmol primers were used per reaction.
Hot start PCR was carried out over 30 cycles in a thermal cycler. After an initial denaturing
temperature of 94°C for 15 minutes, PFU polymerase was added and 30 cycles of
denaturation at 94°C for 1 minute, annealing at 67°C for 1 minute and extension at 72°C for
1 minute were carried out Final extension was 10 minutes at 72°C followed by a 4°C
holding step. PCR products were analysed by agarose gel electrophoresis TrkAI2noHis
mutants were subcloned into Ndel and Xhol digested pET24a to create the expression
vector pET24a-TrkAIg2 noHis.
Figure 18 shows SDS-PAGE analysis of TrkAIg2 noHis expressed in E. coli; (M) markers,
(W) whole cell extract, (S) soluble extract, (I) insoluble extract. It can be seen that TrkAIg2
noHis is expressed mainly in the insoluble fraction.
Production of recombinant TrkAIg2 noHis polypeptide
Electrocompetent E. coli BL21 (DE3) cells were transformed with pET24a-TrkAIg2 noHis
and expression was carried out in accordance with the pET (Novagen) manual. After
transformation E. coli lysates were analysed by SDS-PAGE for expression of the 13.5 kDa
protein. TrkAIg2 noHis protein was expressed at high levels in the urea-soluble fraction
but not in other fractions. 2ml of 2YT broth (containing 50 µg/ml kanomycin), was
inoculated with a colony which was grown at 37°C to mid log phase. This was used to
inoculate 50ml of 2YT broth (containing 50 µg/ml kanomycin), which was grown at 37°C
to mid log phase. This was used to inoculate 5 litres of 2YT broth (containing 50 µg/ml
kanomycin) which was grown to an optical density of 1.0 at 600nm. 1mM IPTG was
added to induce protein expression and cells were grown for 3 hours at 37°C. The harvested
cells were resuspended in 10% glycerol and frozen at -80°C (8 pellets).
Inclusion body preparation
Pressed cells were mixed in 20mM Tris buffer pH 8.5 1mM PMSF, 10mM EDTA, gently
pipetted and 20mM Tris buffer pH 8.5 added. These were centrifuged at 9000 rpm for 60
minutes, and supernatant removed. The procedure was repeated with 20mM Tris buffer pH
8.5, lmM PMSF, lOmM EDTA and 1M NaCl, added and then with 1% Triton X- 100
added. Then a final wash was carried out with 20mM Tris buffer pH 8.5, lmM PMSF,
10mM EDTA. This was subsequently centrifuged at 9000 rpm for 30 minutes. Supernatant
was removed. All washes were at 4°C. Inclusion bodies were frozen at -70°C.
Inclusion bodies were solubilised in 8M urea in 20mM Tris buffer pH 8.5 with 25mM DTT
added for three hours at 14°C.
Refolding of TrkAIg2 noHis polypeptide
Insoluble TrkAIg2 noHis protein contained in the inclusion bodies was released from the
cells with an Xpress, and washed with salt and Triton X100 to remove soluble matter. The
purified inclusion bodies were solubilised in 8M urea buffer (20mM Tris pH 8.5, 25mM
DTT) and incubated at room temperature for 3 hours with gentle shaking.
Purification was carried out using an anion exchange column, such as Q Sepharose Fast
Flow (Pharmacia), equilibrated and run in 8M urea (pH 8.5) with lOmM DTT added.
Protein was eluted with a gradient of NaCl, in which the protein eluted at approximately
180mM NaCl or a step at 200 mM NaCl. Eluted protein was refolded at 1mg/ml on a gel
filtration column in Tris pH 8.5 with 100mM NaCl.
Refolding with gel filtration was successful with a variety of gel filtration media: SuperDex
200, SuperDex 75, Sephacryl HR100, and Sephacryl HR200. In this system, TrkAIg2
noHis ran with a retention coefficient of 0.55. Unexpectedly it ran a little faster than
anticipated compared with TrkAIg2 6His under the same conditions. Increased monomeric
form was observed with extended solubilisation. Additionally, the monomeric peak may
be finally put onto a Poros Q column to concentrate the protein concentration.
Characterisation of TrkAIg2 noHis produced by method of the invention
The molecular mass of TrkAIg2 noHis was determined using a PE Biosystems Voyager-DE
STR MALDITOF mass spectrometer with a nitrogen laser operating at 337nm, The matrix
solution was freshly prepared sinapinic acid at a concentration of 100 mg/100 µl in a 50:50
mixture of acetonitrile and 0.1% trifluoracetic acid. 0.5 µl of the sample and matrix were
spotted onto the sample plate. The sample was calibrated against Calmix 3 (PE
Biosystems) run as a close external standard. The spectrum was acquired over the range
5000-80,000 Da, under linear conditions with an accelerating voltage of 25,000V, an
extraction time of 750nsecs and laser intensity of 2700. Results are shown in Figure 19.
The molecular weight of TrkAIg2 noHis was found to be 13,561.2 Da. This is almost
exactly as predicted by theoretical calculation of the molecular weight (13,553 Da).
Biological activity of TrkAIg2 noHis produced by the method of the invention: PC12
cell bioassays
Biological activity of TrkAIg2 noHis produced by the method of the invention was tested
by PC 12 neurite outgrowth bioassay. PC 12 cells were plated out at 2x104 cells per well in
complete DMEM medium (including 100 units/ml penicillin, 100 ng/ml streptomycin, 10%
horse serum, 10% FCS and 2mM glutamine) on collagen-coated 24-well plates. NGF was
added at 1ng/ml and TrkAIg2 noHis was added at varying concentrations.
Results from an experiment using TrkAIg2 noHis refolded on a SuperDex 200 column are
shown in Figure. 20. Photographs show neurite outgrowth after 48 hours. Cells were fixed
before photographing. Fig. 20A shows neurite outgrowth with 1 ng/ml NGF; Fig. 20B
shows no neurite outgrowth when no NGF is added; Fig. 20C shows reduced neurite
outgrowth when 2.5 µm TrkAIg2 noHis is added; Fig. 20D shows no neurite outgrowth
when 4.5 µm TrkAIg2 noHis is added.
Similar results were obtained using TrkAIg2 noHis refolded on SuperDex 75, Sephacryl
HR100 and Sephacryl HR200 columns.
TrkAIg2noHis was therefore able to prevent neurite growth in response to NGF in the PC 12
cell line.

WE CLAIM;
1. A method of producing tyrosine kinase receptor-related polypeptides, the method
comprising expressing a tyrosine kinase receptor-related polypeptide in a
recombinant expression system and separating expressed monomeric tyrosine
kinase receptor-related polypeptide from multimeric form(s) of the expressed
polypeptide in a separation step, the separation step allowing refolding of the
expressed tyrosine kinase receptor-related polypeptide into a biologically active
form.
2. A method according to claim 1 in which the tyrosine kinase receptor is a native
TrkA, TrkB, or TrkC; or a biologically active homologue, variant, portion of those
receptors or a construct including a homologue, variant, or portion thereof.
3. A method according to claim 2 in which a portion of a tyrosine kinase receptor, or a
construct including such a portion, is expressed and in which the portion is selected
from the Ig2 domains of the TrkA, TrkB; and TrkC receptors respectively.
4. A method according to claim 3 in which the polypeptide is selected from TrkAIg2,
TrkAIg2.6,TrkBIg2 and TrkCIg2.
5. A method according to claim 4 in which the polypeptide is TrkAIg2 or TrkAIg2.6
6. A method according to claim 1, 2, 3, 4 or 5 in which the polypeptide is expressed
with a histidine tag sequence.
7. A method according to any one of claims 1 to 5 in which the polypeptide is
expressed without a histidine tag sequence.
8. A method according to any one of claims 1 to 7 in which the tyrosine kinase
sequence is human.
9. A method according to any preceding claim in which the tyrosine kinase
receptor-related polypeptide is expressed in insoluble form.
10. A method according to claim 9 in which the tyrosine kinase receptor-related
polypeptide is expressed in bacterial inclusion bodies.
11. A method according to any preceding claim in which the multimeric forms include
dimers.
12. A method according to any preceding claim in which the polypeptide is able to bind
a ligand of the corresponding native tyrosine kinase receptor with high affinity.
13. A method according to any preceding claim in which the separation step involves
gel filtration.
14. A method according to any preceding claim in which the separation step is carried
out at a salt concentration between and including 0 mM and 500 mM.
15. A method according to any preceding claim in which the separation step is carried
out at a salt concentration above 25 mM and below 200 mM.
16. A method according to claim 15 in which the separation step is carried out at a salt
concentration of about 100 mM.
17. A method according to any one of claims 13 to 16 in which the gel used in the gel
filtration step is able to separate molecules having a molecular weight of about 12 to
40kDa.
18. A method according to claim 17 in which the gel is Sephadex 200 or SuperDex 200.
19. A method according to claim 18 in which the gel is SuperDex 200.
20. A method according to any preceding claim in which the separation step is carried
out at a pH of between 8 and 9.
21. A method according to claim 20 in which the separation step is carried out at a pH
of about 8.5.
22. A method according to any preceding claim in which the polypeptide is produced in
bacterial-based expression system.
23. A method of purifying recombinant TrkAIg2 or TrkAIg2.6 from inclusion bodies in a
bacterial expression system in which monomeric TrkAIg2 or TrkAIg2.6 is separated
from a mixture including monomeric and multimeric TrkAIg2 or TrkAIg2.6 by a gel
filtration step and allowed to refold into an active form.
24. A method of purifying recombinant TrkBIg2 from inclusion bodies in a bacterial
expression system in which monomeric TrkBIg2 is separated from a mixture
including monomeric and multimeric TrkBIg2 by a gel filtration step and allowed to
refold into an active form.
25. A method of purifying recombinant TrkCIg2 from inclusion bodies in a bacterial
expression system in which monomeric TrkCIg2 is separated from a mixture
including monomeric and multimeric TrkCIg2 by a gel filtration step and allowed to
refold into an active form.
26. A preparation of TrkAIg2 obtained by a method according to any one of claims 3 to
23 and comprising less than 20% TrkAIg2 dimer or dimer aggregate.
27. A preparation of TrkAIg2 according to claim 26 comprising less than 10% TrkAIg2
dimer or dimer aggregate.
28. A preparation of TrkAIg2 according to claim 27 comprising less than 1% TrkAIg2
dimer or dimer aggregate.
29. A preparation of TrkAIg2 according to claim 28 comprising less than 0.1% TrkAIg2
dimer or dimer aggregate.
30. A preparation of TrkAIg2 obtained by a method according to any one of claims 3 to
23 and comprising more than 80% TrkAIg2 monomer.
31. A preparation of TrkAIg2 obtained by a method according to any one of claims 3 to
23 and comprising more than 90% TrkAIg2 monomer.
32. A preparation of TrkAIg2 obtained by a method according to any one of claims 3 to
23 and comprising more than 99% TrkAIg2 monomer.
33. A preparation of TrkAIg2 obtained by a method according to any one of claims 3 to
23 and comprising 100% TrkAIg2 monomer.
34. A preparation of TrkAI2.6 obtained by a method according to any one of claims 3
to 23 and comprising less than 20% TrkAIg2.6 dimer or dimer aggregate.
35. A preparation of TrkAIg2.6 according to claim 34 comprising less than 10%
TrkAIg2.6 dimer or dimer aggregate.
36. A preparation of TrkAIg2.6 according to claim 35 comprising less than 1% of
TrkAIg2.6 dimer or dimer aggregate.
37. A preparation of TrkAIg2.6 according to claim 36 comprising less than 0.1% of
TrkAIg2 dimer or dimer aggregate.
38. A preparation of TrkAIg2.6 obtained by a method according to any one of claims 4 to
23 and comprising more than 80% TrkAIg2.6 monomer.
39. A preparation of TrkAIg2.6 obtained by a method according to any one of claims 4 to
23 and comprising more than 90% TrkAIg2.6 monomer.
40. A preparation of TrkAIg2.6 obtained by a method according to any one of claims 4 to
23 and comprising more than 99% TrkAIg2.6 monomer.
41. A preparation of TrkAIg2 obtained by a method according to any one of claims 4 to
23 and comprising 100% TrkAIg2.6 monomer.
42. A preparation of TrkBIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 24, and comprising less than 20% TrkBIg2 dimer or dimer aggregate.
43. A preparation of TrkBIg2 according to claim 42 comprising less than 10% TrkBIg2
dimer or dimer aggregate.
44. A preparation of TrkBIg2 according to claim 43 comprising less than 1% TrkBIg2
dimer or dimer aggregate.
45. A preparation of TrkBIg2 according to claim 44 comprising less than 0.1% of
TrkBIg2 dimer or dimer aggregate.
46. A preparation of TrkBIg2 obtained by a method according to any one of claim 3, 4,
6, to 22 and 24 and comprising more than 80% TrkBIg2 monomer.
47. A preparation of TrkBIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 24 and comprising more than 90% TrkBIg2 monomer.
48. A preparation of TrkBIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 24 and comprising more than 99% TrkBIg2 monomer.
49. A preparation of TrkBIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 24 and comprising 100% TrkBIg2 monomer.
50. A preparation of TrkCIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 25 and comprising less man 20% TrkCIg2 dimer or dimer aggregate.
51. A preparation of TrkCIg2 according to claim 50 comprising less than 10% TrkCIg2
dimer or dimer aggregate.
52. A preparation of TrkCIg2 according to claim 51 comprising less than 1% TrkCIg2
dimer or dimer aggregate.
53. A preparation of TrkCIg2 according to claim 52 comprising less than 0.1% TrkCIg2
dimer or dimer aggregate.
54. A preparation of TrkCIg2 obtained by a method according to any one of claims 3, 4
6 to 22 and 25 and comprising more than 80% TrkCIg2 monomer.
55. A preparation of TrkCIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 25 and comprising more than 90% TrkCIg2 monomer.
56. A preparation of TrkCIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 25 and comprising more than 99% TrkCIg2 monomer.
57. A preparation of TrkCIg2 obtained by a method according to any one of claims 3, 4,
6 to 22 and 25 and comprising 100% TrkCIg2 monomer.
This invention relates to a purification method, particularly for purifying tyrosine kinase
receptor related polypeptides, and to products made by the method. The method
comprises a method of producing tyrosine kinase receptor-related polypeptides, the
method comprising expressing a tyrosine kinase receptor-related polypeptide in a
recombinant expression system and separating expressed monomeric tyrosine kinase
receptor-related polypeptide from multimeric form(s) of the expressed polypeptide in a
separation step, the separation step allowing refolding of the expressed tyrosine kinase
receptor-related polypeptide into a biologically active form.

Documents:

376-kolnp-2004-granted-abstract.pdf

376-kolnp-2004-granted-claims.pdf

376-kolnp-2004-granted-correspondence.pdf

376-kolnp-2004-granted-description (complete).pdf

376-kolnp-2004-granted-drawings.pdf

376-kolnp-2004-granted-examination report.pdf

376-kolnp-2004-granted-form 1.pdf

376-kolnp-2004-granted-form 18.pdf

376-kolnp-2004-granted-form 2.pdf

376-kolnp-2004-granted-form 26.pdf

376-kolnp-2004-granted-form 3.pdf

376-kolnp-2004-granted-form 5.pdf

376-kolnp-2004-granted-reply to examination report.pdf

376-kolnp-2004-granted-specification.pdf


Patent Number 222922
Indian Patent Application Number 376/KOLNP/2004
PG Journal Number 35/2008
Publication Date 29-Aug-2008
Grant Date 27-Aug-2008
Date of Filing 22-Mar-2004
Name of Patentee THE UNIVERSITY OF BRISTOL
Applicant Address SENATE HOUSE, TYNDALL AVENUE, BRISTOL BS8, 1TH
Inventors:
# Inventor's Name Inventor's Address
1 DAWBARN, DAVID UNIVERSITY RESEARCH CENTER FOR ENDOCRINILOGY, BRISTOL ROYAL INFIRMARY, BRISTOL BS2 8HW
2 ALLEN, SHELLY JANE UNIVERSITY RESEARCE CENTER FOR ENDOCRINOLOGY, BRISTOL ROYAL INFIRMARY, BRISTOL BS2 8HW
3 ROBERTSON, ALAN GEORGE SIMPSON WOODCUTTERS, 15 BUTTS LANE, WICKEN, FLY CAMBRIDGESHIRE CB7 5XU
PCT International Classification Number C 12 N 15/09
PCT International Application Number PCT/GB02/04214
PCT International Filing date 2002-09-17
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 0122400.5 2001-09-17 U.K.