Title of Invention

LIM MINERALIZATION PROTEIN SPLICE VARIANTS TO INDUCE BONE FORMATION

Abstract The present invention is directed to isolated nucleic acid molecules that encode LIM mineralization protein, or LMP. The invention further provides vectors comprising splice variants of nucleotide sequences that encode LMP, as well as host cells comprising those vectors. Moreover, the present invention relates to methods of inducing bone formation by transfecting osteogenic precursor cells with an isolated nucleic acid molecule comprising a nucleotide sequence encoding splice variants of LIM mineralization protein. The transfection may occur ex vivo or in vivo by direct injection of virus or naked plasmid DNA. In a particular embodiment, the invention provides a method of fusing a spine by transfecting osteogenic precursor cells with an isolated nucleic acid molecule having a nucleotide sequence encoding LIM mineralization protein, admixing the transfected osteogenic precursor cells with a matrix and contacting the matrix with the spine. Finally, the invention relates to methods for inducing systemic bone formation by stable transfection of host cells with the vectors of the invention.
Full Text LIM MINERALIZATION PROTEIN SPLICE VARIANTS TO
INDUCE BONE FORMATION
BACKGROUND OF THE INVENTION
1. Field of the Invention
The field of the invention relates generally to osteogenic cells and the
formation of bone and boney tissue in mammalian species. Specifically, the
invention concerns a novel family of proteins, and nucleic acids encoding those
proteins, that enhances the efficacy of bone mineralization in vitro and in vivo.
The invention provides methods for treating a variety of pathological conditions
associated with bone and boney tissue, such as, for example, spine fusion,
fracture repair and osteoporosis.
2. Description of the Related Art
Osteoblasts are thought to differentiate from pluripotent mesenchymal
stem cells. The maturation of an osteoblast results in the secretion of an
extracellular matrix which can mineralize and form bone. The regulation of this
complex process is not well understood but is thought to involve a group of
signaling glycoproteins known as bone morphogenetic proteins (BMPs). These
proteins have been shown to be involved with embryonic dorsal-ventral
patterning, limb bud development, and fracture repair in adult animals. B. L.
Hogan, Genes & Develop., 10:1580 (1996). This group of transforming growth
factor-beta superfamily secreted proteins has a spectrum of activities in a
variety of cell types at different stages of differentiation; differences in
physiological activity between these closely related molecules have not been
clarified. D. M. Kingsley, Trends Genet., 10:16 (199.4).
To better discern the unique physiological role of different BMP signaling
proteins, we recently compared the potency of BMP-6 with that of BMP-2 and
BMP-4, for inducing rat calvarial osteoblast differentiation. Boden et al.,
Endocrinology. 137:3401 (1996). We studied this process in first passage
(secondary) cultures of fetal rat calvaria that require BMP or glucocorticoid for
initiation of differentiation. In this model of membranous bone formation,
glucocorticoid (GC) or a BMP will initiate differentiation to mineralized bone
nodules capable of secreting osteocalcin, the osteoblast-specific protein. This
secondary culture system is distinct from primary rat osteoblast cultures which
undergo spontaneous differentiation. In this secondary system, glucocorticoid
resulted in a ten-fold induction of BMP-6 mRNA and protein expression which
was responsible for the enhancement of osteoblast differentiation. Boden et
al., Endocrinology. 138:2920 (1997).
In addition to extracellular signals, such as the BMPs, intracellular
signals or regulatory molecules may also play a role in the cascade of events
leading to formation of new bone. One broad class of intracellular regulatory
molecules are the LIM proteins, which are so named because they possess a
characteristic structural motif known as the LIM domain. The LIM domain is a
cysteine-rich structural motif composed of two special zinc fingers that are
joined by a 2-amino acid spacer. Some proteins have only LIM domains, while
others contain a variety of additional functional domains. LIM proteins form a
diverse group, which includes transcription factors and cytoskeletal proteins.
The primary role of LIM domains appears to be in mediating protein-protein
interactions, through the formation of dimers with identical or different LIM
domains, or by binding distinct proteins.
In LIM homeodomain proteins, that is, proteins having both LIM domains
and a homeodomain sequence, the LIM domains function as negative
regulatory elements. LIM homeodomain proteins are involved in the control of
cell lineage determination and the regulation of differentiation, although LIM-
only proteins may have similar roles. LIM-only proteins are also implicated in
the control of cell proliferation since several genes encoding such proteins are
associated with oncogenic chromosome translocations.
Humans and other mammalian species are prone to diseases or injuries
that require the processes of bone repair and/or regeneration. For example,
treatment of fractures would be improved by new treatment regimens that
could stimulate the natural bone repair mechanisms, thereby reducing the time
required for the fractured bone to heal. In another example, individuals
afflicted with systemic bone disorders, such as osteoporosis, would benefit
from treatment regimens that would results in systemic formation of new bone.
Such treatment regimens would reduce the incidence of fractures arising from
the loss of bone mass that is a characteristic of this disease.
For at least these reasons, extracellular factors, such as the BMPs,
have been investigated for the purpose of using them to stimulate formation of
new bone in vivo. Despite the early successes achieved with BMPs and other
extracellular signalling molecules, their use entails a number of disadvantages.
For example, relatively large doses of purified BMPs are required to enhance
the production of new bone, thereby increasing the expense of such treatment
methods. Furthermore, extracellular proteins are susceptible to degradation
following their introduction into a host animal. In addition, because they are
typically immunogenic, the possibility of stimulating an immune response to the
administered proteins is ever present.
Due to such concerns, it would be desirable to have available treatment
regimens that use an intracellular signalling molecule to induce new bone
formation. Advances in the field of gene therapy now make it possible to
introduce into osteogenic precursor cells, that is, cells involved in bone
formation, or peripheral blood leukocytes, nucleotide fragments encoding
intracellular signals that form part of the bone formation process. Gene
therapy for bone formation offers a number of potential advantages: (1) lower
production costs; (2) greater efficacy, compared to extracellular treatment
regiments, due to the ability to achieve prolonged expression of the
intracellular signal; (3) it would by-pass the possibility that treatment with
extracellular signals might be hampered due to the presence of limiting
numbers of receptors for those signals; (4) it permits the delivery of transfected
potential osteoprogenitor cells directly to the site where localized bone
formation is required; and (5) it would permit systemic bone formation, thereby
providing a treatment regimen for osteoporosis and other metabolic bone
diseases.
SUMMARY OF THE INVENTION
The present invention seeks to overcome the drawbacks in the prior art
by providing novels compositions and methods for inducing bone formation
using an intracellular signalling molecule that participates early in the cascade
of events that leads to bone formation. Applicants have discovered 10-
4/RLMP (SEQ ID NO: 1, SEQ ID NO: 2), a novel LIM gene with a sequence
originally isolated from stimulated rat calvarial osteoblast cultures. The gene
has been cloned, sequenced and assayed for its ability to enhance the efficacy
of bone mineralization in vitro. The protein RLMP affects mineralization of
bone matrix as well as differentiation of cells into the osteoblast lineage. Unlike
other known cytokines, for example, BMPs, RLMP is not a secreted protein,
but is instead an intracellular signaling molecule. This feature has the
advantage of providing intracellular signaling amplification as well as easier
assessment of transfected cells. It is also suitable for more efficient and
specific in vivo applications. Suitable clinical applications include enhancement
of bone repair in fractures, bone defects, bone grafting, and normal
homeostasis in patients presenting with osteoporosis.
Applicants have also cloned, sequenced and deduced the amino acid
sequence of a corresponding human protein, named human LMP-1. The
human protein demonstrates enhanced efficacy of bone mineralization in vitro
and in vivo.
In addition, the applicants have characterized a truncated (short) version
of LMP-1, termed HLMP-1s. This short version resulted from a point mutation
in one source of a cDNA clone, providing a stop codon which truncated the
protein. The short version (LMP-1 s) is fully functional when expressed in cell
culture and in vivo.
Using PCR analysis of human heart cDNA library, Applicants have
identified two alternative splice variants (referred to as HLMP-2 and HLMP-3)
that differ from HLMP-1 in a region between base pairs 325 and 444 in the
nucleotide sequence encoding HLMP-1. The HLMP-2 sequence has a 119
base pair deletion and an insertion of 17 base pairs in this region. Compared
to HLMP-1, the nucleotide sequence encoding HLMP-3 has no deletions, but it
does have the same 17 base pairs as HLMP-2, which are inserted at position
444 in the HLMP-1 sequence.
Additional features and advantages of the invention will be set forth in
the description which follows, and in part will be apparent from the description,
or may be learned by practice of the invention. The objectives and other
advantages of the invention will be realized and attained by the methods and
compositions of matter particularly pointed out in the written description and
claims hereof.
In one broad aspect, the invention relates to an isolated nucleic acid
molecule comprising a nucleic acid sequence encoding any LIM mineralization
protein, wherein the nucleic acid molecule hybridizes under standard
conditions to a nucleic acid molecule complementary to the full length of SEQ.
ID NO: 25, and wherein the molecule hybridizes under highly stringent
conditions to a nucleic acid molecule complementary to the full length of SEQ.
ID NO: 26. In a specific aspect, the isolated nucleic acid molecule encodes
HLMP-1, HLMP-1s, RLMP, HLMP-2, or HLMP-3. In addition, the invention is
directed to vectors comprising these nucleic acid molecules, as well as host
cells comprising the vectors. In another specific aspect, the invention relates to
the proteins themselves.
In a second broad aspect, the invention relates to antibody that is
specific for LIM mineralization protein, including HLMP-1, HLMP-1s, RLMP,
HLMP-2, and HLMP-3. In one specific aspect, the antibody is a polyclonal
antibody. In another specific aspect, the antibody is a monoclonal antibody.
In a third broad aspect, the invention relates to method of inducing bone
formation wherein osteogenic precursor cells are transfected with an isolated
nucleic acid molecule comprising a nucleotide sequence encoding LIM
mineralization protein. In one specific aspect, the isolated nucleic acid
molecule is in a vector, which may be a plasmid or a virus, such as adenovirus
or retrovirus. The transfection may occur ex vivo or in vivo by direct injection of
the isolated nucleic acid molecule. The transfected isolated nucleic acid
molecule may encode HLMP-1, HLMP-1s, RLMP, HLMP-2, or HLMP-3.
In a further aspect, the invention relates to methods of fusing a spine by
transfecting osteogenic precursor cells with an isolated nucleic acid molecule
having a nucleotide sequence encoding LIM mineralization protein, admixing
the transfected osteogenic precursor cells with a matrix and contacting the
matrix with the spine.
In yet another aspect, the invention relates to methods for inducing
systemic bone formation by stable transfection of host cells with the vectors of
the invention.
It is to be understood that both the foregoing general description and the
following detailed description are exemplary and explanatory and are intended
to provide further explanation of the invention as claimed.
ABBREVIATIONS AND DEFINITIONS
BMP Bone Morphogenetic Protein
HLMP-1 Human LMP-1, also
designated as Human LIM
Protein or HLMP
HLMP-1 s Human LMP-1 Short
(truncated) protein
HLMPU Human LIM Protein Unique
Region
LMP LIM mineralization protein
MEM Minimal essential medium
Trm Triamcinolone
-GlyP Beta-glycerolphosphate
RACE Rapid Amplification of cDNA
Ends
RLMP Rat LIM mineralization protein,
also designated as RLMP-1
RLMPU Rat LIM Protein Unique
Region
RNAsin RNase inhibitor
ROB Rat Osteoblast
10-4 Clone containing cDNA
sequence for RLMP (SEQ ID
NO: 2)
UTR Untranslated Region
HLMP-2 Human LMP Splice Variant 2
HLMP-3 Human LMP Splice Variant 3
DETAILED DESCRIPTION OF THE INVENTION
The present invention relates to novel mammalian LIM proteins, herein
designated LIM mineralization proteins, or LMP. The invention relates more
particularly to human LMP, known as HLMP or HLMP-1, or alternative splice
variants of human LMP, which are known as HLMP-2 or HLMP-3. The
applicants have discovered that these proteins enhance bone mineralization in
mammalian cells grown in vitro. When produced in mammals, LMP also
induces bone formation in vivo.
Ex vivo transfection of bone marrow cells, osteogenic precursor cells,
peripheral blood leukocytes, or mesenchymal stem cells with nucleic acid that
encodes LMP or HLMP, followed by reimplantation of the transfected cells in
the donor, is suitable for treating a variety of bone-related disorders or injuries.
For example, one can use this method to: augment long bone fracture repair;
generate bone in segmental defects; provide a bone graft substitute for
fractures; facilitate tumor reconstruction or spine fusion; and provide a local
treatment (by injection) for weak or osteoporotic bone, such as in osteoporosis
of the hip, vertebrae, or wrist. Transfection with LMP or HLMP-encoding
nucleic acid is also useful in: the percutaneous injection of transfected marrow
cells to accelerate the repair of fractured long bones; treatment of delayed
union or non-unions of long bone fractures or pseudoarthrosis of spine fusions;
and for inducing new bone formation in avascular necrosis of the hip or knee.
In addition to ex vivo-based methods of gene therapy, transfection of a
recombinant DNA vector comprising a nucleic acid sequence that encodes
LMP or HLMP can be accomplished in vivo. When a DNA fragment that
encodes LMP or HLMP is inserted into an appropriate viral vector, for example,
an adenovirus vector, the viral construct can be injected directly into a body
site were endochondral bone formation is desired. By using a direct,
percutaneous injection to introduce the LMP or HLMP sequence stimulation of
bone formation can be accomplished without the need for surgical intervention
either to obtain bone marrow cells (to transfect ex vivo) or to reimplant them
into the patient at the site where new bone is required. Alden et al.,
Neurosurgical Focus (1998), have demonstrated the utility of a direct injection
method of gene therapy using a cDNA that encodes BMP-2, which was cloned
into an adenovirus vector.
It is also possible to carry out in vivo gene therapy by directly injecting
into an appropriate body site, a naked, that is, unencapsulated, recombinant
plasmid comprising a nucleic acid sequence that encodes HLMP. In this
embodiment of the invention, transfection occurs when the naked plasmid DNA
is taken up, or internalized, by the appropriate target cells, which have been
described. As in the case of in vivo gene therapy using a viral construct, direct
injection of naked plasmid DNA offers the advantage that little or no surgical
intervention is required. Direct gene therapy, using naked plasmid DNA that
encodes the endothelial cell mitogen VEGF (vascular endothelial growth
factor), has been successfully demonstrated in human patients. Baumgartner
et al., Circulation. 97(12):1114-23 (1998).
By using an adenovirus vector to deliver LMP into osteogenic cells,
transient expression of LMP is achieved. This occurs because adenovirus
does not incorporate into the genome of target cells that are transfected.
Transient expression of LMP, that is, expression that occurs during the lifetime
of the transfected target cells, is sufficient to achieve the objects of the
invention. Stable expression of LMP, however, can occur when a vector that
incorporates into the genome of the target cell is used as a delivery vehicle.
Retrovirus-based vectors, for example, are suitable for this purpose.
Stable expression of LMP is particularly useful for treating various
systemic bone-related disorders, such as osteoporosis and osteogenesis
imperfecta. For this embodiment of the invention, in addition to using a vector
that integrates into the genome of the target cell to deliver an LMP-encoding
nucleotide sequence into target cells, LMP expression is placed under the
control of a regulatable promoter. For example, a promoter that is turned on by
exposure to an exogenous inducing agent, such as tetracycline, is suitable.
Using this approach, one can stimulate formation of new bone on a systemic
basis by administering an effective amount of the exogenous inducing agent.
Once a sufficient quantity of bone mass is achieved, administration of the
exogenous inducing agent is discontinued. This process may be repeated as
needed to replace bone mass lost, for example, as a consequence of
osteoporosis.
Antibodies specific for HLMP are particularly suitable for use in methods
for assaying the osteoinductive, that is, bone-forming, potential of patient cells.
In this way one can identify patients at risk for slow or poor healing of bone
repair. Also, HLMP-specific antibodies are suitable for use in marker assays to
identify risk factors in bone degenerative diseases, such as, for example,
osteoporosis.
Following well known and conventional methods, the genes of the
present invention are prepared by ligation of nucleic acid segments that
encode LMP to other nucleic acid sequences, such as cloning and/or
expression vectors. Methods needed to construct and analyze these
recombinant vectors, for example, restriction endonuclease digests, cloning
protocols, mutagenesis, organic synthesis of oligonucleotides and DNA
sequencing, have been described. For DNA sequencing DNA, the
dieoxyterminator method is the preferred.
Many treatises on recombinant DNA methods have been published,
including Sambrook et al., Molecular Cloning: A Laboratory Manual. Cold
Spring Harbor Press, 2nd edition (1988), Davis et al., Basic Methods in
Molecular Biology. Elsevier (1986), and Ausubel et al., Current Protocols in
Molecular Biology. Wiley Interscience (1988). These reference manuals are
specifically incorporated by reference herein.
Primer-directed amplification of DNA or cDNA is a common step in the
expression of the genes of this invention. It is typically performed by the
polymerase chain reaction (PCR). PCR is described in U.S. Patent No.
4,800,159 to Mullis et al. and other published sources. The basic principle of
PCR is the exponential replication of a DNA sequence by successive cycles of
primer extension. The extension products of one primer, when hybridized to
another primer, becomes a template for the synthesis of another nucleic acid
molecule. The primer-template complexes act as substrate for DNA
polymerase, which in performing its replication function, extends the primers.
The conventional enzyme for PCR applications is the thermostable DNA
polymerase isolated from Thermus aquaticus, or Taq DNA polymerase.
Numerous variations of the basic PCR method exist, and a particular
procedure of choice in any given step needed to construct the recombinant
vectors of this invention is readily performed by a skilled artisan. For example,
to measure cellular expression of 10-4/RLMP, RNA is extracted and reverse
transcribed under standard and well known procedures. The resulting cDNA is
then analyzed for the appropriate mRNA sequence by PCR.
The gene encoding the LIM mineralization protein is expressed in an
expression vector in a recombinant expression system. Of course, the
constructed sequence need not be the same as the original, or its
complimentary sequence, but instead may be any sequence determined by the
degeneracy of the DNA code that nonetheless expresses an LMP having bone
forming activity. Conservative amino acid substitutions, or other modifications,
such as the occurrence of an amino-terminal methionine residue, may also be
employed.
A ribosome binding site active in the host expression system of choice is
ligated to the 5' end of the chimeric LMP coding sequence, forming a synthetic
gene. The synthetic gene can be inserted into any one of a large variety of
vectors for expression by ligating to an appropriately linearized plasmid. A
regulatable promoter, for example, the E. coli lac promoter, is also suitable for
the expression of the chimeric coding sequences. Other suitable regulatable
promoters include trp, tac, recA, T7 and lambda promoters.
DNA encoding LMP is transfected into recipient cells by one of several
standard published procedures, for example, calcium phosphate precipitation,
DEAE-Dextran, electroporation or protoplast fusion, to form stable
transformants. Calcium phosphate precipitation is preferred, particularly when
performed as follows.
DNAs are coprecipitated with calcium phosphate according to the
method of Graham and Van Der, Virology. 52:456 (1973), before transfer into
cells. An aliquot of 40-50 g of DNA, with salmon sperm or calf thymus DNA as
a carrier, is used for 0.5x106 cells plated on a 100 mm dish. The DNA is mixed
with 0.5 ml of 2X Hepes solution (280 mM NaCI, 50 mM Hepes and 1.5 mM
Na2HPO4. pH 7.0), to which an equal volume of 2x CaCI2 (250 mM CaCI2 and
10 mM Hepes, pH 7.0) is added. A white granular precipitate, appearing after
30-40 minutes, is evenly distributed dropwise on the cells, which are allowed to
incubate for 4-16 hours at 37°C. The medium is removed and the cells
shocked with 15% glycerol in PBS for 3 minutes. After removing the glycerol,
the cells are fed with Dulbecco's Minimal Essential Medium (DMEM) containing
10% fetal bovine serum.
DNA can also be transfected using: the DEAE-Dextran methods of
Kimura et al., Virology. 49:394 (1972) and Sompayrac et al., Proc. Natl. Acad.
Sci. USA. 78:7575 (1981); the electroporation method of Potter, Proc. Natl.
Acad. Sci. USA. 81:7161 (1984); and the protoplast fusion method of Sandri-
Goddin et al., Molec. Cell. BioL., 1:743 (1981).
Phosphoramidite chemistry in solid phase is the preferred method for
the organic synthesis of oligodeoxynucleotides and polydeoxynucleotides. In
addition, many other organic synthesis methods are available. Those methods
are readily adapted by those skilled in the art to the particular sequences of the
invention.
The present invention also includes nucleic acid molecules that
hybridize under standard conditions to any of the nucleic acid sequences
encoding the LIM mineralization proteins of the invention. "Standard
hybridization conditions" will vary with the size of the probe, the background
and the concentration of the nucleic acid reagents, as well as the type of
hybridization, for example, in situ, Southern blot, or hybrization of DNA-RNA
hybrids (Northern blot). The determination of "standard hybridization
conditions" is within the level of skill in the art. For example, see U.S. Patent
5,580,775 to Fremeau et al., herein incorporated by reference for this purpose.
See also, Southern, E. M., J. Mol. BioL 98:503 (1975), Alwine et al., Meth.
Enzymol., 68:220 (1979), and Sambrook et al., Molecular Cloning: A
laboratory Manual. 2nd edition, pp. 7.19-7.50, Cold Spring Harbor Press
(1989).
One preferred set of standard hybrization conditions involves a blot that
is prehybridized at 42°C for 2 hours in 50% formamide, 5X SSPE (150 nM
NaCI, 10 mM Na H2PO4 [pH 7.4], 1 mM EDTA [pH 8.0]), 5X Denhardt's solution
(20 mg Ficoll, 20 mg polyvinylpyrrolidone and 20 mg BSA per 100 ml water),
10% dextran sulphate, 1% SDS and 100 g/ml salmon sperm DNA. A 32P-
labelled cDNA probe is added, and hybridization is continued for 14 hours.
Afterward, the blot is washed twice with 2X SSPE, 0.1% SDS for 20 minutes at
22°C, followed by a 1 hour wash at 65°C in 0.1X SSPE, 0.1 %SDS. The blot is
then dried and exposed to x-ray film for 5 days in the presence of an
intensifying screen.
Under "highly stringent conditions," a probe will hybridize to its target
sequence if those two sequences are substantially identical. As in the case of
standard hybridization conditions, one of skill in the art can, given the level of
skill in the art and the nature of the particular experiment, determine the
conditions under which only susbstantially identical sequences will hybridize.
Another aspect of the invention includes the proteins encoded by the
nucleic acid sequences. In still another embodiment, the inventon relates to
the identification of such proteins based on anti-LMP antibodies. In this
embodiment, protein samples are prepared for Western blot analysis by lysing
cells and separating the proteins by SDS-PAGE. The proteins are transferred
to nitrocellulose by electroblotting as described by Ausubel et al., Current
Protocols in Molecular Biology. John Wiley and Sons (1987). After blocking
the filter with instant nonfat dry milk (1 gm in 100 ml PBS), anti-LMP antibody is
added to the filter and incubated for 1 hour at room temperature. The filter is
washed thoroughly with phosphate buffered saline (PBS) and incubated with
horseradish peroxidase (HRPO)-antibody conjugate for 1 hour at room
temperature. The filter is again washed thoroughly with PBS and the antigen
bands are identified by adding diaminobenzidine (DAB).
Monospecific antibodies are the reagent of choice in the present
invention, and are specifically used to analyze patient cells for specific
characteristics associated with the expression of LMP. "Monospecific
antibody" as used herein is defined as a single antibody species or multiple
antibody species with homogenous binding characteristics for LMP.
"Homogeneous binding" as used herein refers to the ability of the antibody
species to bind to a specific antigen or epitope, such as those associated with
LMP, as described above. Monospecific antibodies to LMP are purified from
mammalian antisera containing antibodies reactive against LMP or are
prepared as monoclonal antibodies reactive with LMP using the technique of
Kohler and Milstein, Nature. 256:495-97 (1975). The LMP specific antibodies
are raised by immunizing animals such as, for example, mice, rats, guinea
pigs, rabbits, goats or horses, with an appropriate concentration of LMP either
with or without an immune adjuvant.
In this process, preimmune serum is collected prior to the first
immunization. Each animal receives between about 0.1 mg and about 1000
mg of LMP associated with an acceptable immune adjuvant, if desired. Such
acceptable adjuvants include, but are not limited to, Freund's complete,
Freund's incomplete, alum-precipitate, water in oil emulsion containing
Corynebacterium parvum and tRNA adjuvants. The initial immunization
consists of LMP in, preferably, Freund's complete adjuvant injected at multiple
sites either subcutaneously (SC), intraperitoneally (IP) or both. Each animal is
bled at regular intervals, preferably weekly, to determine antibody titer. The
animals may or may not receive booster injections following the initial
immunization. Those animals receiving booster injections are generally given
an equal amount of the antigen in Freund's incomplete adjuvant by the same
route. Booster injections are given at about three week intervals until maximal
titers are obtained. At about 7 days after each booster immunization or about
weekly after a single immunization, the animals are bled, the serum collected,
and aliquots are stored at about -20° C.
Monoclonal antibodies (mAb) reactive with LMP are prepared by
immunizing inbred mice, preferably Balb/c mice, with LMP. The mice are
immunized by the IP or SC route with about 0.1 mg to about 10 mg, preferably
about 1 mg, of LMP in about 0.5 ml buffer or saline incorporated in an equal
volume of an acceptable adjuvant, as discussed above. Freund's complete
adjuvant is preferred. The mice receive an initial immunization on day 0 and
are rested for about 3-30 weeks. Immunized mice are given one or more
booster immunizations of about 0.1 to about 10 mg of LMP in a buffer solution
such as phosphate buffered saline by the intravenous (IV) route. Lymphocytes
from antibody-positive mice, preferably splenic lymphocytes, are obtained by
removing the spleens from immunized mice by standard procedures known in
the art. Hybridoma cells are produced by mixing the splenic lymphocytes with
an appropriate fusion partner, preferably myeloma cells, under conditions
which will allow the formation of stable hybridomas. Fusion partners may
include, but are not limited to: mouse myelomas P3/NS1/Ag 4-1; MPC-11; S-
194 and Sp 2/0, with Sp 2/0 being preferred. The antibody producing cells and
myeloma cells are fused in polyethylene glycol, about 1000 mol. wt., at
concentrations from about 30% to about 50%. Fused hybridoma cells are
selected by growth in hypoxanthine, thymidine and aminopterin in
supplemented Dulbecco's Modified Eagles Medium (DMEM) by procedures
known in the art. Supernatant fluids are collected from growth positive wells on
about days 14,18, and 21, and are screened for antibody production by an
immunoassay such as solid phase immunoradioassay (SPIRA) using LMP as
the antigen. The culture fluids are also tested in the Ouchterlony precipitation
assay to determine the isotype of the mAb. Hybridoma cells from antibody
positive wells are cloned by a technique such as the soft agar technique of
MacPherson, "Soft Agar Techniques", in Tissue Culture Methods and
Applications. Kruse and Paterson (eds.), Academic Press (1973). See, also,
Harlow et a/., Antibodies: A Laboratory Manual. Cold Spring Laboratory
(1988).
Monoclonal antibodies may also be produced in vivo by injection of
pristane- primed Balb/c mice, approximately 0.5 ml per mouse, with about
2x106 to about 6x106 hybridoma cells about 4 days after priming. Ascites fluid
is collected at approximately 8-12 days after cell transfer and the monoclonal
antibodies are purified by techniques known in the art.
In vitro production in anti-LMP mAb is carried out by growing the
hydridoma cell line in DMEM containing about 2% fetal calf serum to obtain
sufficient quantities of the specific mAb. The mAb are purified by techniques
known in the art.
Antibody titers of ascites or hybridoma culture fluids are determined by
various serological or immunological assays, which include, but are not limited
to, precipitation, passive agglutination, enzyme-linked immunosorbent antibody
(ELISA) technique and radioimmunoassay (RIA) techniques. Similar assays
are used to detect the presence of the LMP in body fluids or tissue and cell
extracts.
It is readily apparent to those skilled in the art that the above described
methods for producing monospecific antibodies may be utilized to produce
antibodies specific for polypeptide fragments of LMP, full-length nascent LMP
polypeptide, or variants or alleles thereof.
In another embodiment, the invention is directed to alternative splice
variants of HLMP-1. PCR analysis of human heart cDNA revealed mRNA for
two HLMP alternative splice variants, named HLMP-2 and HLMP-3, that differ
from HLMP-1 in a region between base pairs 325 and 444 in the hLMP-1
sequence. The HLMP-2 sequence has a 119 base pair deletion and an
insertion of 17 base pairs in this region. These changes preserve the reading
frame, resulting in a 423 amino acid protein, which compared to HLMP-1, has a
net loss of 34 amino acids (40 amino acids deleted plus 6 inserted amino
acids). HLMP-2 contains the c-terminal LIM domains that are present in
HLMP-1.
Compared to HLMP-1, HLMP-3 has no deletions, but it does have the
same 17 base pair insertion at position 444. This insertion shifts the reading
frame, causing a stop codon at base pairs 459-461. As a result, HLMP-3
encodes a protein of 153 amino acids. This protein lacks the c-terminal LIM
domains that are present in HLMP-1 and HLMP-2. The predicted size of the
proteins encoded by HLMP-2 and HLMP-3 was confirmed by western blot
analysis.
PCR analysis of the tissue distribution of the three splice variants
revealed that they are differentially expressed, with specific isoforms
predominating in different tissues. HLMP-1 is apparently the predominant form
expressed in leukocytes, spleen, lung, placenta, and fetal liver. HLMP-2
appears to be the predominant isoform in skeletal muscle, bone marrow, and
heart tissue. HLMP-3, however, was not the predominant isoform in any tissue
examined.
Overexpression of HLMP-3 in secondary rat osteoblast cultures induced
bone nodule formation (287±56) similar to the effect seen for glucicorticoid
(272±7) and HLMP-1 (232±200). Since HLMP-3 lacks the C-terminal LIM
domains, there regions are not required for osteoinductive activity.
Overexpression of HLMP-2, however, did not induce nodule formation (11±3).
These data suggest that the amino acids encoded by the deleted 119 base
pairs are necessary for osteoinduction. The data also suggest that the
distribution of HLMP splice variants may be important for tissue-specific
function. Surprisingly, we have shown that HLMP-2 inhibits steroid-induced
osteoblast formation in secondary rat osteoblast cultures. Therefore, HLMP-2
will have therapeutic utility in clinical situations where bone formation is not
desirable.
On July 22, 1997, a sample of 10-4/RLMP in a vector designated
pCMV2/RLMP (which is vector pRc/CMV2 with insert 10-4 clone/RLMP) was
deposited with the American Type Culture Collection (ATCC), 12301 Parklawn
Drive, Rockville, MD 20852. The culture accession number for that deposit is
209153. On March 19, 1998, a sample of the vector pHis-A with insert HLPM-
1s was deposited at the American Type Culture Collection ("ATCC"). The
culture accession number for that deposit is 209698. On April 14, 2000,
samples of plasmids pHAhLMP-2 (vector pHisA with cDNA insert derived from
human heart muscle cDNA with HLMP-2) and pHAhLMP-3 (vector pHisA with
cDNA insert derived from human heart muscle cDNA with HLMP-3) were
deposited with the ATCC, 10801 University Blvd., Manassas, VA, 20110-2209,
USA, under the conditions of the Budapest treaty. The accession numbers for
these deposits are PTA-1698 and PTA-1699, respectively. These deposits, as
required by the Budapest Treaty, will be maintained in the ATCC for at least
30 years and will be made available to the public upon the grant of a patent
disclosing them. It should be understood that the availability of a deposit does
not constitute a license to practice the subject invention in derogation of patent
rights granted by government action.
In assessing the nucleic acids, proteins, or antibodies of the invention,
enzyme assays, protein purification, and other conventional biochemical
methods are employed. DNA and RNA are analyzed by Southern blotting and
Northern blotting techniques, respectively. Typically, the samples analyzed are
size fractionated by gel electrophoresis. The DNA or RNA in the gels are then
transferred to nitrocellulose or nylon membranes. The blots, which are replicas
of sample patterns in the gels, were then hybridized with probes. Typically, the
probes are radiolabelled, preferably with 32P, although one could label the
probes with other signal-generating molecules known to those in the art.
Specific bands of interest can then be visualized by detection systems, such as
autoradiography.
For purposes of illustrating preferred embodiments of the present
invention, the following, non-limiting examples are included. These results
demonstrate the feasibiliity of inducing or enhancing the formation of bone
using the LIM mineralization proteins of the invention, and the isolated nucleic
acid molecules encoding those proteins.
Example 1: Calvarial Cell Culture
Rat calvarial cells, also known as rat osteoblasts ("ROB"), were obtained
from
20-day pre-parturition rats as previously described. Boden et al.,
Endocrinology. 137(8):3401-07 (1996). Primary cultures were grown to
confluence (7 days), trypsinized, and passed into 6-well plates (1 x 105 cells/35
mm well) as first subculture cells. The subculture cells, which were confluent
at day 0, were grown for an additional 7 days. Beginning on day 0, media were
changed and treatments (Trm and/or BMPs) were applied, under a laminar flow
hood, every 3 or 4 days. The standard culture protocol was as follows: days 1-
7, MEM, 10% FBS, 50 g/ml ascorbic acid, ± stimulus; days 8-14, BGJb
medium, 10% FBS, 5mM -GlyP (as a source of inorganic phosphate to permit
mineralization). Endpoint analysis of bone nodule formation and osteocalcin
secretion was performed at day 14. The dose of BMP was chosen as 50 ng/ml
based on pilot experiments in this system that demonstrated a mid-range effect
on the dose-response curve for all BMPs studied.
EXAMPLE 2: Antisense Treatment and Cell Culture
To explore the potential functional role of LMP-1 during membranous
bone formation, we synthesized an antisense oligonucleotide to block LMP-1
mRNA translation and treated secondary osteoblast cultures that were
undergoing differentiation initiated by glucocorticoid. Inhibition of RLMP
expression was accomplished with a highly specific antisense oligonucleotide
(having no significant homologies to known rat sequences) corresponding to a
25 bp sequence spanning the putative translational start site (SEQ ID NO: 42).
Control cultures either did not receive oligonucleotide or they received sense
oligonucleotide. Experiments were performed in the presence (preincubation)
and absence of lipofectamine. Briefly, 22 g of sense or antisense RLMP
oligonucleotide was incubated in MEM for 45 minutes at room temperature.
Following that incubation, either more MEM or pre-incubated
lipofectamine/MEM (7% v/v; incubated 45 minutes at room temperature) was
added to achieve an oligonucleotide concentration of 0.2 M. The resulting
mixture was incubated for 15 minutes at room temperature. Oligonucleotide
mixtures were then mixed with the appropriate medium, that is,
MEM/Ascorbate/±Trm, to achieve a final oligonucleotide concentration of 0.1
M.
Cells were incubated with the appropriate medium (±stimulus) in the
presence or absence of the appropriate oligonucleotides. Cultures originally
incubated with lipofectamine were re-fed after 4 hours of incubation (37°C; 5%
CO2) with media containing neither lipofectamine nor oligonucleotide. All
cultures, especially cultures receiving oligonucleotide, were re-fed every 24
hours to maintain oligonucleotide levels.
LMP-1 antisense oligonucleotide inhibited mineralized nodule formation
and osteocalcin secretion in a dose-dependent manner, similar to the effect of
BMP-6 oligonucleotide. The LMP-1 antisense block in osteoblast
differentiation could not be rescued by addition of exogenous BMP-6, while the
BMP-6 antisense oligonucleotide inhibition was reversed with addition of BMP-
6. This experiment further confirmed the upstream position of LMP-1 relative
to BMP-6 in the osteoblast differentiation pathway. LMP-1 antisense
oligonucleotide also inhibited spontaneous osteoblast differentiation in primary
rat osteoblast cultures.
EXAMPLE 3: Quantitation of Mineralized Bone Nodule Formation
Cultures of ROBs prepared according to Examples 1 and 2 were fixed
overnight in 70% ethanol and stained with von Kossa silver stain. A semi-
automated computerized video image analysis system was used to quantitate
nodule count and nodule area in each well. Boden et al., Endocrinology.
137(8):3401-07 (1996). These values were then divided to calculate the area
per nodule values. This automated process was validated against a manual
counting technique and demonstrated a correlation coefficient of 0.92
(p mean (S.E.M.) calculated from 5 or 6 wells at each condition. Each experiment
was confirmed at least twice using cells from different calvarial preparations.
EXAMPLE 4: Quantitation of Osteocalcin Secretion
Osteocalcin levels in the culture media were measured using a
competitive radioimmunoassay with a monospecific polyclonal antibody (Pab)
raised in our laboratory against the C-terminal nonapeptide of rat osteocalcin
as described in Nanes et al., Endocrinology. 127:588 (1990). Briefly, 1 g of
nonapeptide was iodinated with 1 mCi 125l-Na by the lactoperoxidase method.
Tubes containing 200 I of assay buffer (0.02 M sodium phosphate, 1 mM
EDTA, 0.001% thimerosal, 0.025% BSA) received media taken from cell
cultures or osteocalcin standards (0 -12,000 fmole) at 100 I/tube in assay
buffer. The Pab (1:40,000; 100 I) was then added, followed by the iodinated
peptide (12,000 cpm; 100 I). Samples tested for non-specific binding were
prepared similarly but contained no antibody.
Bound and free PAbs were separated by the addition of 700 I goat anti-
rabbit IgG, followed by incubation for 18 hours at 4°C. After samples were
centrifuged at 1200 rpm for 45 minutes, the supernatants were decanted and
the precipitates counted in a gamma counter. Osteocalcin values were
reported in fmole/1001, which was then converted to pmole/ml medium (3-day
production) by dividing those values by 100. Values were expressed as the
mean ± S.E.M. of triplicate determinations for 5-6 wells for each condition.
Each experiment was confirmed at least two times using cells from different
calvarial preparations.
EXAMPLE 5: Effect of Trm and RLMP on Mineralization In Vitro
There was little apparent effect of either the sense or antisense
oligonucleotides on the overall production of bone nodules in the non-
stimulated cell culture system. When ROBs were stimulated with Trm,
however, the antisense oligonucleotide to RLMP inhibited mineralization of
nodules by > 95%. The addition of exogenous BMP-6 to the oligonucleotide-
treated cultures did not rescue the mineralization of RLMP-antisense-treated
nodules.
Osteocalcin has long been synonymous with bone mineralization, and
osteocalcin levels have been correlated with nodule production and
mineralization. The RLMP-antisense oligonucleotide significantly decreases
osteocalcin production, but the nodule count in antisense-treated cultures does
not change significantly. In this case, the addition of exogenous BMP-6 only
rescued the production of osteocalcin in RLMP-antisense-treated cultures by
10-15%. This suggests that the action of RLMP is downstream of, and more
specific than, BMP-6.
EXAMPLE 6: Harvest and Purification of RNA
Cellular RNA from duplicate wells of ROBs (prepared according to
Examples 1 and 2 in 6-well culture dishes) was harvested using 4M guanidine
isothiocyanate (GIT) solution to yield statistical triplicates. Briefly, culture
supernatant was aspirated from the wells, which were then overiayed with 0.6
ml of GIT solution per duplicate well harvest. After adding the GIT solution, the
plates were swirled for 5-10 seconds (being as consistent as possible).
Samples were saved at -70°C for up to 7 days before further processing.
RNA was purified by a slight modification of standard methods
according to Sambrook et al., Molecular Cloning: a Laboratory Manual. 2nd
Ed., chapter 7.19, Cold Spring Harbor Press (1989). Briefly, thawed samples
received 60 I 2.0 M sodium acetate (pH 4.0), 550 I phenol (water saturated)
and 150 I chloroform:isoamyl alcohol (49:1). After vortexing, the samples were
centrifuged (10000 x g; 20 minutes; 4°C), the aqueous phase transferred to a
fresh tube, 600 I isopropanol was added and the RNA precipitated overnight at
-20°C.
Following the overnight incubation, the samples were centrifuged
(10000 x g; 20 minutes) and the supernatant was aspirated gently. The pellets
were resuspended in 400 I DEPC-treated water, extracted once with
phenol:chloroform (1:1), extracted with chlorofornrisoamyl alcohol (24:1) and
precipitated overnight at -20°C after addition of 40 I sodium acetate (3.0 M; pH
5.2) and 1.0 ml absolute ethanol. To recover the cellular RNA, the samples
were centrifuged (10000 x g; 20 min), washed once with 70% ethanol, air dried
for 5-10 minutes and resuspended in 20 I of DEPC-treated water. RNA
concentrations were calculated from optical densities that were determined
with a spectrophotometer.
EXAMPLE 7: Reverse Transcription-Polymerase Chain Reaction
Heated total RNA (5 g in 10.5 I total volume DEPC-H2O at 65°C for 5
minutes) was added to tubes containing 4 I 5X MMLV-RT buffer, 2 I dNTPs, 2 I
dT17 primer (10 pmol/ml), 0.5 I RNAsin (40U/ml) and 1 I MMLV-RT (200
units/1). The samples were incubated at 37°C for 1 hour, then at 95°C for 5
minutes to inactivate the MMLV-RT. The samples were diluted by addition of
80 I of water.
Reverse-transcribed samples (5 I) were subjected to polymerase-chain
reaction using standard methodologies (50 I total volume). Briefly, samples
were added to tubes containing water and appropriate amounts of PCR buffer,
25 mM MgCI2, dNTPs, forward and reverse primers for glyceraldehyde 3-
phosphate dehydrogenase (GAP, a housekeeping gene) and/or BMP-6), 32P-
dCTP, and Taq polymerase. Unless otherwise noted, primers were
standardized to run consistently at 22 cycles (94°C, 30"; 58°C, 30"; 72°C, 20").
EXAMPLE 8: Quantitation of RT-PCR Products by Polyacrylamide Gel
Electrophoresis (PAGE) and Phosphorlmager Analysis
RT-PCR products received 5 I/tube loading dye, were mixed, heated at
65°C for 10 min and centrifuged. Ten I of each reaction was subjected to
PAGE (12% polyacrylamide:bis; 15 V/well; constant current) under standard
conditions. Gels were then incubated in gel preserving buffer (10% v/v
glycerol, 7% v/v acetic acid, 40% v/v methanol, 43% deionized water) for 30
minutes, dried (80°C) in vacuo for 1-2 hours and developed with an
electronically-enhanced phosphoresence imaging system for
6-24 hours. Visualized bands were analyzed. Counts per band were plotted
graphically.
EXAMPLE 9: Differential Display PCR
RNA was extracted from cells stimulated with glucocorticoid (Trm, 1
nM). Heated, DNase-treated total RNA (5 g in 10.5 I total volume in DEPC-
H2O at 65°C for 5 minutes) was reverse transcribed as described in Example 7,
but H-T11M (SEQ ID. NO: 4) was used as the MMLV-RT primer. The resulting
cDNAs were PCR-amplified as described above, but with various commercial
primer sets (for example,
H-T11G (SEQ ID NO: 4) and H-AP-10 (SEQ ID. NO: 5); GenHunter Corp,
Nashville, TN). Radiolabelled PCR products were fractionated by gel
electrophoresis on a DNA sequencing gel. After electrophoresis, the resulting
gels were dried in vacua and autoradiographs were exposed overnight. Bands
representing differentially-expressed cDNAs were excised from the gel and
reamplified by PCR using the method of Conner et al., Proc. Natl. Acad. Sci.
USA. 88:278 (1983). The products of PCR reamplification were cloned into
the vector PCR-II (TA cloning kit; InVitrogen, Carlsbad, CA).
EXAMPLE 10: Screening of a UMR 106 Rat Osteosarcoma Cell cDNA Library
A UMR 106 library (2.5 x 1010 pfu/ml) was plated at 5 x 104 pfu/ml onto
agar plates (LB bottom agar) and the plates were incubated overnight at 37°C.
Filter membranes were overlaid onto plates for two minutes. Once removed,
the filters were denatured, rinsed, dried and UV cross-linked. The filters were
then incubated in pre-hyridization buffer (2X PIPES [pH 6.5], 5% formamide,
1 % SDS and 100 g/ml denatured salmon sperm DNA) for 2 h at 42°C. A 260
base-pair radiolabelled probe (SEQ ID NO: 3; 32P labelled by random priming)
was added to the entire hybridization mix/filters, followed by hybridization for 18
hours at 42°C. The membranes were washed once at room temperature (10
min, 1 x SSC, 0.1% SDS) and three times at 55°C (15 min, 0.1 x SSC, 0.1%
SDS).
After they were washed, the membranes were analyzed by
autoradiography as described above. Positive clones were plaque purified.
The procedure was repeated with a second filter for four minutes to minimize
spurious positives. Plaque-purified clones were rescued as lambda SK(-)
phagemids. Cloned cDNAs were sequenced as described below.
EXAMPLE 11: Sequencing of Clones
Cloned cDNA inserts were sequenced by standard methods. Ausubel et
a/., Current Protocols in Molecular Biology. Wiley Interscience (1988). Briefly,
appropriate concentrations of termination mixture, template and reaction
mixture were subjected to an appropriate cycling protocol (95°C,30s; 68°C,30s;
72°C,60s; x 25). Stop mixture was added to terminate the sequencing
reactions. After heating at 92°C for 3 minutes, the samples were loaded onto a
denaturing 6% polyacrylamide sequencing gel (29:1 acrylamide:bis-
acrylamide). Samples were electrophoresed for about 4 hours at 60 volts,
constant current. After electrophoresis, the gels were dried in vacuo and
autoradiographed.
The autoradiographs were analyzed manually. The resulting sequences
were screened against the databases maintained by the National Center for
Biotechnology Information (NIH, Bethesda, MD; http://www.ncbi.nlm.nih.gov/)
using the BLASTn program set with default parameters. Based on the
sequence data, new sequencing primers were prepared and the process was
repeated until the entire gene had been sequenced. All sequences were
confirmed a minimum of three times in both orientations.
Nucleotide and amino acid sequences were also analyzed using the
PCGENE software package (version 16.0). Per cent homology values for
nucleotide sequences were calculated by the program NALIGN, using the
following parameters: weight of non-matching nucleotides, 10; weight of non-
matching gaps, 10; maximum number of nucleotides considered, 50; and
minimum number of nucleotides considered, 50.
For amino acid sequences, per cent homology values were calculated
using PALIGN. A value of 10 was selected for both the open gap cost and the
unit gap cost.
FXAMPLE 12: Cloning of RLMP cDNA
The differential display PCR amplification products described in
Example 9 contained a major band of approximately 260 base pairs. This
sequence was used to screen a rat osteosarcoma (UMR 106) cDNA library.
Positive clones were subjected to nested primer analysis to obtain the primer
sequences necessary for amplifying the full length cDNA. (SEQ. ID NOs: 11,
12, 29, 30 and 31) One of those positive clones selected for further study was
designated clone 10-4.
Sequence analysis of the full-length cDNA in clone 10-4, determined by
nested primer analysis, showed that clone 10-4 contained the original 260
base-pair fragment identified by differential display PCR. Clone 10-4 (1696
base pairs; SEQ ID NO: 2) contains an open reading frame of 1371 base pairs
encoding a protein having 457 amino acids (SEQ ID NO: 1). The termination
codon, TGA, occurs at nucleotides 1444-1446. The polyadenylation signal at
nucleotides 1675-1680, and adjacent poly(A)+ tail, was present in the 3'
noncoding region. There were two potential N-glycosylation sites, Asn-Lys-Thr
and Asn-Arg-Thr, at amino acid positions 113-116 and 257-259 in SEQ ID NO:
1, respectively. Two potential cAMP- and cGMP-dependent protein kinase
phosphorylation sites, Ser and Thr, were found at amino acid positions 191
and 349, respectively. There were five potential protein kinase C
phosphorylation sites, Ser or Thr, at amino acid positions 3, 115, 166, 219,
442. One potential ATP/GTP binding site motif A (P-loop), Gly-Gly-Ser-Asn-
Asn-Gly-Lys-Thr, was determined at amino acid positions 272-279.
In addition, two highly conserved putative LIM domains were found at
amino acid positions 341-391 and 400-451. The putative LIM domains in this
newly identified rat cDNA clone showed considerable homology with the LIM
domains of other known LIM proteins. However, the overall homology with
other rat LIM proteins was less than 25%. RLMP (also designated 10-4) has
78.5% amino acid homology to the human enigma protein (see U.S. Patent No.
5,504,192), but only 24.5% and 22.7% amino acid homology to its closest rat
homologs, CLP-36 and RIT-18, respectively.
FXAMPLE 13: Northern Blot Analysis of RLMP Expression
Thirty g of total RNA from ROBs, prepared according to Examples 1 and
2, was size fractionated by formaldehyde gel electrophoresis in 1% agarose
flatbed gels and osmotically transblotted to nylon membranes. The blot was
probed with a 600 base pair EcoR1 fragment of full-length 10-4 cDNA labeled
with 32P-dCTP by random priming.
Northern blot analysis showed a 1.7 kb mRNA species that hybridized
with the RLMP probe. RLMP mRNA was up-regulated approximately 3.7-fold
in ROBs after 24 hours exposure to BMP-6. No up-regulation of RMLP
expression was seen in BMP-2 or BMP-4-stimulated ROBs at 24 hours.
FXAMPLE 14: Statistical Methods
For each reported nodule/osteocalcin result, data from 5-6 wells from a
representative experiment were used to calculate the mean ± S.E.M. Graphs
may be shown with data normalized to the maximum value for each parameter
to allow simultaneous graphing of nodule counts, mineralized areas and
osteocalcin.
For each reported RT-PCR, RNase protection assay or Western blot
analysis, data from triplicate samples of representative experiments, were used
to determine the mean ± S.E.M. Graphs may be shown normalized to either
day 0 or negative controls and expressed as fold-increase above control
values.
Statistical significance was evaluated using a one-way analysis of
variance with post-hoc multiple comparison corrections of Bonferroni as
appropriate. D. V. Huntsberger, The Analysis of Variance," in Elements of
Statistical Variance. P. Billingsley (ed.), pp. 298-330, Allyn & Bacon Inc.,
Boston, MA (1977) and Sigmastat, Jandel Scientific, Corte Madera, CA. Alpha
levels for significance were defined as p EXAMPLE 15: Detection of Rat LIM Mineralization Protein by Western Blot
Analysis
Polyclonal antibodies were prepared according to the methods of
England et ai, Biochim.Biophys. Acta. 623:171 (1980) and Timmer et a/., J
Biol. Chem.. 268:24863 (1993).
HeLa cells were transfected with pCMV2/RLMP. Protein was harvested
from the transfected cells according to the method of Hair et al, Leukemia
Research. 20:1 (1996). Western Blot Analysis of native RLMP was performed
as described by Towbin et al., Proc. Natl. Acad. Sci. USA. 76:4350 (1979).
EXAMPLE 16: Synthesis of the Rat LMP-Unique (RLMPU) derived Human
PCR product
Based on the sequence of the rat LMP-1 cDNA, forward and reverse
PCR primers (SEQ ID NOs: 15 and 16) were synthesized and a unique 223
base-pair sequence was PCR amplified from the rat LMP-1 cDNA. A similar
PCR product was isolated from human MG63 osteosarcoma cell cDNA with the
same PCR primers.
RNA was harvested from MG63 osteosarcoma cells grown in T-75
flasks. Culture supernatant was removed by aspiration and the flasks were
overlayed with 3.0 ml of GIT solution per duplicate, swirled for 5-10 seconds,
and the resulting solution was transferred to 1.5 ml eppendorf tubes (5 tubes
with 0.6 ml/tube). RNA was purified by a slight modification of standard
methods, for example, see Sambrook et al., Molecular Cloning: A Laboratory
Manual, chapter 7, page 19, Cold Spring Harbor Laboratory Press (1989) and
Boden et al., Endocrinology. 138:2820-28 (1997). Briefly, the 0.6 ml samples
received 60 I 2.0 M sodium acetate (pH 4.0), 550 I water saturated phenol and
150 I chloroform:isoamyl alcohol (49:1). After addiiton of those reagents, the
samples were vortexed, centrifuged (10000 x. g; 20 min; 4C) and the aqueous
phase transferred to a fresh tube. Isopropanol (600 I) was added and the RNA
was precipitated overnight at -20°C. The samples were centrifuged (10000 x
g; 20 minutes) and the supernatant was aspirated gently. The pellets were
resuspended in 400 I of DEPC-treated water, extracted once with
phenokchloroform (1:1), extracted with chloroform;isoamyl alcohol (24:1) and
precipitated overnight at -20°C in 40 I sodium acetate (3.0 M; pH 5.2) and 1.0
ml absolute ethanol. After precipitation, the samples were centrifuged (10000
x g; 20 min), washed once with 70% ethanol, air dried for 5-10 minutes and
resuspended in 20 I of DEPC-treated water. RNA concentrations were derived
from optical densities.
Total RNA (5 g in 10.5 L total volume in DEPC-H2O) was heated at 65°C
for 5 minutes, and then added to tubes containing 4 I 5X MMLV-RT buffer, 2 I
dNTPs, 2 I dT17 primer (10 pmol/ml), 0.5 I RNAsin (40 U/ml) and 1 I MMLV-RT
(200 units/1). The reactions were incubated at 37°C for 1 hour. Afterward, the
MMLV-RT was inactivated by heating at 95°C for 5 minutes. The samples
were diluted by addition of 80 L water.
Transcribed samples (5 I) were subjected to polymerase-chain reaction
using standard methodologies (50 I total volume). Boden et al., Endocrinology.
138:2820-28 (1997); Ausubel et al., "Quantitation of rare DNAs by the
polymerase chain reaction", in Current Protocols in Molecular Biology, chapter
15.31-1, Wiley & Sons, Trenton, NJ (1990). Briefly, samples were added to
tubes containing water and appropriate amounts of PCR buffer (25 mM MgC12,
dNTPs, forward and reverse primers (for RLMPU; SEQ ID NOs: 15 and 16),
32P-dCTP, and DNA polymerase. Primers were designed to run consistently at
22 cycles for radioactive band detection and 33 cycles for amplification of PCR
product for use as a screening probe (94°C, 30 sec, 58°C, 30 sec; 72°C, 20
sec).
Sequencing of the agarose gel-purified MG63 osteosarcoma-derived
PCR product gave a sequence more than 95% homologous to the RLMPU
PCR product. That sequence is designated HLMP unique region (HLMPU;
SEQ ID NO: 6).
EXAMPLE 17: Screening of reverse-transcriptase-derived MG63 cDNA
Screening was performed with PCR using specific primers (SEQ ID
NOs: 16 and 17) as described in Example 7. A 717 base-pair MG63 PCR
product was agarose gel purified and sequenced with the given primers (SEQ.
ID NOs: 12,15,16, 17, 18, 27 and 28). Sequences were confirmed a
minimum of two times in both directions. The MG63 sequences were aligned
against each other and then against the full-length rat LMP cDNA sequence to
obtain a partial human LMP cDNA sequence (SEQ ID NO: 7).
EXAMPLE 18: Screening of a Human Heart cDNA Library
Based on Northern blot experiments, it was determined that LMP-1 is
expressed at different levels by several different tissues, including human heart
muscle. A human heart cDNA library was therefore examined. The library was
plated at 5 x 104 pfu/ml onto agar plates (LB bottom agar) and plates were
grown overnight at 37° C. Filter membranes were overlaid onto the plates for
two minutes. Afterward, the filters denatured, rinsed, dried, UV cross-linked
and incubated in pre-hyridization buffer (2X PIPES [pH 6.5]; 5% formamide,
1% SDS, 100 g/ml denatured salmon sperm DNA) for 2 h at 42°C. A
radiolabelled, LMP-unique, 223 base-pair probe (32P, random primer labelling;
SEQ ID NO: 6) was added and hybridized for 18 h at 42°C. Following
hybridization, the membranes were washed once at room temperature (10 min,
1 x SSC, 0.1% SDS) and three times at 55°C (15 min, 0.1 x SSC, 0.1% SDS).
Double-positive plaque-purified heart library clones, identified by
autoradiography, were rescued as lambda phagemids according to the
manufacturers' protocols (Stratagene, La Jolla, CA).
Restriction digests of positive clones yielded cDNA inserts of varying
sizes. Inserts greater than 600 base-pairs in length were selected for initial
screening by sequencing. Those inserts were sequenced by standard
methods as described in Example 11.
One clone, number 7, was also subjected to automated sequence
analysis using primers corresponding to SEQ ID NOs: 11-14,16 and 27. The
sequences obtained by these methods were routinely 97-100% homologous.
Clone 7 (Partial Human LMP-1 cDNA from a heart library; SEQ. ID NO: 8)
contained sequence that was more than 87% homologous to the rat LMP
cDNA sequence in the translated region.
EXAMPLE 19: Determination of Full-Lenath Human LMP-1 cDNA
Overlapping regions of the MG63 human osteosarcoma cell cDNA
sequence and the human heart cDNA clone 7 sequence were used to align
those two sequences and derive a complete human cDNA sequence of 1644
base-pairs. NALIGN, a program in the PCGENE software package, was used
to align the two sequences. The overlapping regions of the two sequences
constituted approximately 360 base-pairs having complete homology except for
a single nucleotide substitution at nucleotide 672 in the MG63 cDNA (SEQ ID
NO: 7) with clone 7 having an "A" instead of a "G" at the corresponding
nucleotide 516 (SEQ ID NO: 8).
The two aligned sequences were joined using SEQIN, another
subprogram of PCGENE, using the "G" substitution of the MG63 osteosarcoma
cDNA clone. The resulting sequence is shown in SEQ ID NO: 9. Alignment of
the novel human-derived sequence with the rat LMP-1 cDNA was
accomplished with NALIGN. The full-length human LMP-1 cDNA sequence
(SEQ. ID NO: 9) is 87.3% homologous to the translated portion of rat LMP-1
cDNA sequence.
EXAMPLE 20: Determination of Amino Acid Sequence of Human I MP-1
The putative amino acid sequence of human LMP-1 was determined
with the PCGENE subprogram TRANSL. The open reading frame in SEQ ID
NO: 9 encodes a protein comprising 457 amino acids (SEQ. ID NO: 10). Using
the PCGENE subprogram Palign, the human LMP-1 amino acid sequence was
found to be 94.1% homologous to the rat LMP-1 amino acid sequence.
EXAMPLE 21: Determination of the 5 Prime Untranslated Region of the
Human LMP cDNA
MG63 5' cDNA was amplified by nested RT-PCR of MG63 total RNA
using a 51 rapid amplification of cDNA ends (51 RACE) protocol. This method
included first strand cDNA synthesis using a lock-docking oligo (dT) primer with
two degenerate nucleotide positions at the 3' end (Chenchik et a/.,
CLONTECHniaues. X:5 (1995); Borson et al, PC Methods Applic. 2:144
(1993)). Second-strand synthesis is performed according to the method of
Gubler et ai, Gene. 25:263 (1983), with a cocktail of Escherichia coli DNA
polymerase I, RNase H, and E. coli DNA ligase. After creation of blunt ends
with T4 DNA polymerase, double-stranded cDNA was ligated to the fragment
(5' -CTAATACGACTCACTATAGGGCTCGAGCGGCCGCCCGGGCAGGT- 3')
(SEQ.ID NO: 19). Prior to RACE, the adaptor-ligated cDNA was diluted to a
concentration suitable for Marathon RACE reactions (1:50). Adaptor-ligated
double-stranded cDNA was then ready to be specifically cloned.
First-round PCR was performed with the adaptor-specific
oligonucleotide, 5'-CCATCCTAATACGACTCACTATAGGGC- 3' (AP1) (SEQ.ID
NO: 20) as sense primer and a Gene Specific Primer (GSP) from the unique
region described in Example 16 (HLMPU). The second round of PCR was
performed using a nested primers GSP1-HLMPU (antisense/reverse primer)
(SEQ. ID NO: 23) and GSP2-HLMPUF (SEQ. ID NO: 24) (see Example 16;
sense/forward primer). PCR was performed using a commercial kit (Advantage
cDNA PCR core kit; CloneTech Laboratories Inc., Palo Alto, CA) that utilizes
an antibody-mediated, but otherwise standard, hot-start protocol. PCR
conditions for MG63 cDNA included an initial hot-start denaturation (94°C, 60
sec) followed by: 94°C, 30 sec; 60°C, 30 sec; 68°C, 4 min; 30 cycles. The first-
round PCR product was approximately 750 base-pairs in length whereas the
nested PCR product was approximately 230 base-pairs. The first-round PCR
product was cloned into linearized pCR 2.1 vector (3.9 Kb). The inserts were
sequenced in both directions using M13 Forward and Reverse primers (SEQ.
ID NO: 11; SEQ. ID NO: 12)
FXAMPLE 22: Determination of Full-length Human LMP-1 cDNA with 5 Prime
UTR
Overlapping MG63 human osteosarcoma cell cDNA 5'-UTR sequence
(SEQ ID NO: 21), MG63 717 base-pair sequence (Example 17; SEQ ID NO: 8)
and human heart cDNA clone 7 sequence (Example 18) were aligned to derive
a novel human cDNA sequence of 1704 base-pairs (SEQ.ID NO: 22). The
alignment was accomplished with NALIGN, (both PCGENE and Omiga 1.0;
Intelligenetics). Over-lapping sequences constituted nearly the entire 717
base-pair region (Example 17) with 100% homology. Joining of the aligned
sequences was accomplished with SEQIN.
EXAMPLE 23: Construction of LIM Protein Expression Vector
The construction of pHIS-5ATG LMP-1s expression vector was carried
out with the sequences described in Examples 17 and 18. The 717 base-pair
clone (Example 17; SEQ ID NO: 7) was digested with Clal and EcoRV. A
small fragment (~250 base-pairs) was gel purified. Clone 7 (Example 18; SEQ
ID NO: 8) was digested with Clal and Xbal and a 1400 base-pair fragment was
gel purified. The isolated 250 base-pair and 1400 base-pair restriction
fragments were ligated to form a fragment of-1650 base-pairs.
Due to the single nucleotide substitution in Clone 7 (relative to the 717
base-pair PCR sequence and the original rat sequence) a stop codon at
translated base-pair 672 resulted. Because of this stop codon, a truncated
(short) protein was encoded, hence the name LMP-1s. This was the construct
used in the expression vector (SEQ ID NO: 32). The full length cDNA
sequence with 5' UTR (SEQ ID NO: 33) was created by alignment of SEQ ID
NO: 32 with the 5' RACE sequence (SEQ ID NO: 21). The amino acid
sequence of LMP-1s (SEQ ID NO: 34) was then deduced as a 223 amino acid
protein and confirmed by Western blot (as in Example 15) to run at the
predicted molecular weight of ~ 23.7 kD.
The pHis-ATG vector (InVitrogen, Carlsbad, CA) was digested with
EcoRV and Xbal. The vector was recovered and the1650 base-pair restriction
fragment was then ligated into the linearized pHis-ATG. The ligated product
was cloned and amplified. The pHis-ATG-LMP-1s Expression vector, also
designated pHIS-A with insert HLMP-1s, was purified by standard methods.
EXAMPLE 24: Induction of Bone Nodule Formation and Mineralization In vitro
with LMP Expression Vector
Rat Calvarial cells were isolated and grown in secondary culture
according to Example 1. Cultures were either unstimulated or stimulated with
glucocorticoid (GC) as described in Example 1. A modification of the Superfect
Reagent (Qiagen, Valencia, CA) transfection protocol was used to transfect 3
g/well of each vector into secondary rat calvarial osteoblast cultures according
to Example 25.
Mineralized nodules were visualized by Von Kossa staining, as described in
Example 3. Human LMP-1s gene product overexpression alone induced
bone nodule formation (~203 nodules/well) in vitro. Levels of nodules were
approximately 50% of those induced by the GC positive control (~412
nodules/well). Other positive controls included the pHisA-LMP-Rat expression
vector (~152 nodules/well) and the pCMV2/LMP-Rat-Fwd Expression vector
(-206 nodules/well), whereas the negative controls included the pCMV2/LMP-
Rat-Rev. Expression vector (-2 nodules/well) and
untreated (NT) plates (~4 nodules/well). These data demonstrate that the
human cDNA was at least as osteoinductive as the rat cDNA. The effect was
less than that observed with GC stimulation, most likely due to suboptimal
doses of Expression vector.
EXAMPLE 25: LMP-lnduced Cell Differentiation In Vitro and In Vivo
The rat LMP cDNA in clone 10-4 (see Example 12) was excised from
the vector by double-digesting the clone with Notl and Apal overnight at 37°C.
Vector pCMV2 MCS (InVitrogen, Carlsbad, CA) was digested with the same
restriction enzymes. Both the linear cDNA fragment from clone 10-4 and
pCMV2 were gel purified, extracted and ligated with T4 ligase. The ligated
DNA was gel purified, extracted and used to transform E. coli JM109 cells for
amplification. Positive agar colonies were picked, digested with Notl and Apal
and the restriction digests were examined by gel electrophoresis. Stock
cultures were prepared of positive clones.
A reverse vector was prepared in analogous fashion except that the
restriction enzymes used were Xbal and Hindlll. Because these restriction
enzymes were used, the LMP cDNA fragment from clone 10-4 was inserted
into pRc/CMV2 in the reverse (that is, non-translatable) orientation. The
recombinant vector produced is designated pCMV2/RLMP.
An appropriate volume of pCMV10-4 (60 nM final concentration is
optimal [3 g]; for this experiment a range of 0-600 nM/well [0-30 g/well] final
concentration is preferred) was resuspended in Minimal Eagle Media (MEM) to
450 I final volume and vortexed for 10 seconds. Superfect was added (7.5 I/ml
final solution), the solution was vortexed for 10 seconds and then incubated at
room termperature for 10 minutes. Following this incubation, MEM
supplemented with 10% FBS (1 ml/well; 6 ml/plate) was added and mixed by
pipetting.
The resulting solution was then promptly pipetted (1 ml/well) onto
washed ROB cultures. The cultures were incubated for 2 hours at 37°C in a
humidified atmosphere containing 5% CO2. Afterward, the cells were gently
washed once with sterile PBS and the appropriate normal incubation medium
was added.
Results demonstrated significant bone nodule formation in all rat cell
cultures which were induced with pCMV10-4. For example, pCMV10-4
transfected cells produced 429 nodules/well. Positive control cultures, which
were exposed to Trm, produced 460 nodules/well. In contrast, negative
controls, which received no treatment, produced 1 nodule/well. Similarly, when
cultures were transfected with pCMV10-4 (reverse), no nodules were
observed.
For demonstrating de novo bone formation in vivo, marrow was
aspirated from the hindlimbs of 4-5 week old normal rats (mu/+; heterozygous
for recessive athymic condition). The aspirated marrow cells were washed in
alpha MEM, centrifuged, and RBCs were lysed by resuspending the pellet in
0.83% NH4CI in 10 mM Tris (pH 7.4), The remaining marrow cells were
washed 3x with MEM and transfected for 2 hours with 9 g of pCMV-LMP-1s
(forward or reverse orientation) per 3 x 106 cells. The transfected cells were
then washed 2X with MEM and resuspended at a concentration of 3 x 107
cells/ml.
The cell suspension (100 I) was applied via sterile pipette to a sterile 2 x
5 mm type I bovine collagen disc (Sulzer Orthopaedics, Wheat Ridge, CO).
The discs were surgically implanted subcutaneously on the skull, chest,
abdomen or dorsal spine of 4-5 week old athymic rats (rnu/rnu). The animals
were scarified at 3-4 weeks, at which time the discs or surgical areas were
excised and fixed in 70% ethanol. The fixed specimens were analyzed by
radiography and undecalcified histologic examination was performed on 5 m
thick sections stained with Goldner Trichrome. Experiments were also
performed using devitalized (guanidine extracted) demineralized bone matrix
(Osteotech, Shrewsbury, NJ) in place of collagen discs.
Radiography revealed a high level of mineralized bone formation that
conformed to the form of the original collagen disc containing LMP-1s
transfected marrow cells. No mineralized bone formation was observed in the
negative control (cells transfected with a reverse-oriented version of the LMP-
1s cDNA that did not code for a translated protein), and absorption of the
carrier appeared to be well underway.
Histology revealed new bone trabeculae lined with osteroblasts in the
LMP-1s transfected implants. No bone was seen along with partial resorption
of the carrier in the negative controls.
Radiography of a further experiment in which 18 sets (9 negative control
pCMV-LMP-REV & 9 experimental pCMV-LMP-1s) of implants were added to
sites alternating between lumbar and thoracic spine in athymic rats
demonstrated 0/9 negative control implants exhibiting bone formation (spine
fusion) between vertebrae. All nine of the pCMV-LMP-1s treated implants
exhibited solid bone fusions between vertebrae.
EXAMPLE 26: The Synthesis of pHIS-5' ATG LMP-1s Expression Vector from
the sequences Demonstrated in Examples 2 and 3,
The 717 base-pair clone (Example 17) was digested with Clal and
EcoRV (New England Biologicals, city, MA). A small fragment (~250 base-
pairs) was gel purified. Clone No. 7 (Example 18) was digested with Clal and
Xbal. A 1400 base-pair fragment was gel purified from that digest. The
isolated 250 base-pair and 1400 base-pair cDNA fragments were ligated by
standard methods to form a fragment of ~1650 bp. The pHis-A vector
(InVitrogen) was digested with EcoRV and Xbal. The linearized vector was
recovered and ligated to the chimeric 1650 base-pair cDNA fragment. The
ligated product was cloned and amplified by standard methods, and the pHis-
A-5' ATG LMP-1s expression vector, also denominated as the vector pHis-A
with insert HLMP-1s, was deposited at the ATCC as previously described.
EXAMPLE 27: The Induction of Bone Nodule Formation and Mineralization In
Vitro With pHis-5' ATG LMP-1s Expression Vector
Rat calvarial cells were isolated and grown in secondary culture
according to Example 1. Cultures were either unstimulated or stimulated with
glucocorticoid (GC) according to Example 1. The cultures were transfected
with 3 g of recombinant
pHis-A vector DNA/well as described in Example 25. Mineralized nodules
were visualized by Von Kossa staining according to Example 3.
Human LMP-1s gene product overexpression alone (i.e., without GC
stimulation) induced significant bone nodule formation (~203 nodules/well) in
vitro. This is approximately 50% of the amount of nodules produced by cells
exposed to the GC positive control (~412 nodules/well). Similar results were
obtained with cultures transfected with pHisA-LMP-Rat Expression vector
(~152 nodules/well) and pCMV2/LMP-Rat-Fwd (~206 nodules/well). In
contrast, the negative control pCMV2/LMP-Rat-Rev yielded (~2 nodules/well),
while approximately 4 nodules/well were seen in the untreated plates. These
data demonstrate that the human LMP-1 cDNA was at least as osteoinductive
as the rat LMP-1 cDNA in this model system. The effect in this experiment was
less than that observed with GC stimulation; but in some the effect was
comparable.
EXAMPLE 28: LMP Induces Secretion of a Soluble Osteoinductive Factor
Overexpression of RLMP-1 or HLMP-1s in rat calvarial osteoblast
cultures as described in Example 24 resulted in significantly greater nodule
formation than was observed in the negative control. To study the mechanism
of action of LIM mineralization protein conditioned medium was harvested at
different time points, concentrated to 10 X, sterile filtered, diluted to its original
concentration in medium containing fresh serum, and applied for four days to
untransfected cells.
Conditioned media harvested from cells transfected with RLMP-1 or
HLMP-1s at day 4 was approximately as effective in inducing nodule formation
as direct overexpression of RLMP-1 in transfected cells. Conditioned media
from cells transfected with RLMP-1 or HLMP-1 in the reverse orientation had
no apparent effect on nodule formation. Nor did conditioned media harvested
from LMP-1 transfected cultures before day 4 induce nodule formation. These
data suggest that expression of LMP-1 caused the synthesis and/or secretion
of a soluble factor, which did not appear in culture medium in effectie amounts
until 4 days post transfection.
Since overexpression of rLMP-1 resulted in the secretion of an
osteoinductive factor into the medium, Western blot analysis was used to
determine if LMP-1 protein was present in the medium. The presence of rLMP-
1 protein was assessed using antibody specific for LMP-1 (QDPDEE) and
detected by conventional means. LMP-1 protein was found only in the cell
layer of the culture and not detected in the medium.
Partial purification of the osteoinductive soluble factor was accomplished
by standard 25% and 100% ammonium sulfate cuts followed by DE-52 anion
exchange batch chromatography (100 mM or 500 mM NaCI). All activity was
observed in the high ammonium sulfate, high NaCI fractions. Such localization
is consistent with the possibility of a single factor being responsible for
conditioning the medium.
EXAMPLE 29: Gene Therapy In Lumbar Spine Fusion Mediated by Low Dose
Adenovirus
This study determined the optimal dose of adenoviral delivery of the
LMP-1 cDNA (SEQ ID NO: 2) to promote spine fusion in normal, that is,
immune competent, rabbits.
A replication-deficient human recombinant adenovirus was constructed
with the LMP-1 cDNA (SEQ ID NO: 2) driven by a CMV promoter using the
Adeno-Quest™ Kit (Quantum Biotechnologies, Inc., Montreal). A commercially
available (Quantum Biotechnologies, Inc., Montreal) recombinant adenovirus
containing the beta-galactosidase gene was used as a control.
Initially, an in vitro dose response experiment was performed to
determine the optimal concentration of adenovirus-delivered LMP-1 ("AdV-
LMP-1") to induce bone differentiation in rat calvarial osteoblast cultures using
a 60-minute transduction with a multiplicity of infection ("MOI") of 0.025, 0.25,
2.5, or 25 plaque-forming units (pfu) of virus per cell. Positive control cultures
were differentiated by a 7-day exposure to 109 M glucocorticoid ("GC").
Negative control cultures were left untreated. On day 14, the number of
mineralized bone nodules was counted after von Kossa staining of the
cultures, and the level of osteocalcin secreted into the medium (pmol/mL) was
measured by radioimmunoassay (mean ± SEM).
The results of this experiment are shown in Table I. Essentially no
spontaneous nodules formed in the untreated negative control cultures. The
data show that a MOI equal to 0.25 pfu/cell is most effective for osteoinducing
bone nodules, achieving a level comparable to the positive control (GC).
Lower and higher doses of adenovirus were less effective.
In vivo experiments were then performed to determine If the optimal in
vitro dose was capable of promoting intertransverse process spine fusions in
skeletally mature New Zealand white rabbits. Nine rabbits were anesthetized
and 3 cc of bone marrow was aspirated from the distal femur through the
intercondylar notch using an 18 gauge needle. The buffy coat was then
isolated, a 10-minute transduction with AdV-LMP-1 was performed, and the
cells were returned to the operating room for implantation. Single level
posterolateral lumbar spine arthrodesis was performed with decortication of
transverse processes and insertion of carrier (either rabbit devitalized bone
matrix or a collagen sponge) containing 8-15 million autologous nucleated
buffy coat cells transduced with either AdV-LMP-1 (MOI = 0.4) or AdV-BGal
(MOI = 0.4). Rabbits were euthanized after 5 weeks and spine fusions were
assessed by manual palpation, plain x-rays, CT scans, and undecalcified
histology.
The spine fusion sites that received AdV-LMP-1 induced solid,
continuous spine fusion masses in all nine rabbits. In contrast, the sites
receiving AdV-BGal, or a lower dose of AdV-LMP-1 (MOI = 0.04) made little or
no bone and resulted in spine fusion at a rate comparable to the carrier alone
( scan, and histology. Plain radiographs, however, sometimes overestimated
the amount of bone that was present, especially in the control sites. LMP-1
cDNA delivery and bone induction was successful with both of the carrier
materials tested. There was no evidence of systemic or local immune
response to the adenovirus vector.
These data demonstrate consistent bone induction in a previously
validated rabbit spine fusion model which is quite challenging. Furthermore,
the protocol of using autogenous bone marrow cells with intraoperative ex vivo
gene transduction (10 minutes) is a more clinically feasible procedure than
other methods that call for overnight transduction or cell expansion for weeks in
culture. In addition, the most effective dose of recombinant adenovirus
(MOI=0.25) was substantially lower than doses reported in other gene therapy
applications (MOI-40-500). We believe this is due to the fact that LMP-1 is an
intracellular signaling molecule and may have powerful signal amplification
cascades. Moreover, the observation that the same concentration of AdV-
LMP-1 that induced bone in cell culture was effective in vivo was also
surprising given the usual required increase in dose of other growth factors
when translating from cell culture to animal experiments. Taken together,
these observations indicate that local gene therapy using adenovirus to deliver
the LMP-1 cDNA is possible and the low dose required will likely minimize the
negative effects of immune response to the adenovirus vector.
EXAMPLE 30: Use of Peripheral Venous Blood Nucleated Cells (Buffy Coat)
for Gene Therapy With LMP-1 cDNA To Make Bone
In four rabbits we performed spine fusion surgery as above (Example
29) except the transduced cells were the buffy coat from venous blood rather
than bone marrow. These cells were transfected with Adeno-LMP or pHIS-
LMP plasmid and had equivalent successful results as when bone marrow cells
were used. This discovery of using ordinary venous blood cells for gene
delivery makes gene therapy more feasible clinically since it avoids painful
marrow harvest under general anesthesia and yields two times more cells per
mL of starting material.
EXAMPLE 31: Isolation of Human LMP-1 Splice Variants
Intron/Exon mRNA transcript splice variants are a relatively common
regulatory mechanism in signal transduction and cellular/tissue development.
Splice variants of various genes have been shown to alter protein-protein,
protein-DNA, protein-RNA, and protein-substrate interactions. Splice variants
may also control tissue specificity for gene expression allowing different forms
(and therefore functions) to be expressed in various tissues. Splice variants
are a common regulatory phenomenon in cells. It is possible that the LMP
splice variants may result in effects in other tissues such as nerve
regeneration, muscle regeneration, or development of other tissues.
To screen a human heart cDNA library for splice variants of the HLMP-1
sequence, a pair of PCR primer corresponding to sections of SEQ ID NO: 22
was prepared. The forward PCR primer, which was synthesized using
standard techniques, corresponds to nucleotides 35-54 of SEQ ID NO: 22. It
has the following sequence:
5' GAGCCGGCATCATGGATTCC 3' (SEQ ID NO: 35)
The reverse PCR primer, which is the reverse complement of
nucleotides 820-839 in SEQ ID NO: 22, has the following sequence:
5' GCTGCCTGCACAATGGAGGT 3' (SEQ ID NO: 36)
The forward and reverse PCR primers were used to screen human heart
cDNA (ClonTech, Cat No. 7404-1) for sequences similar to HLMP-1 by
standard techniques, using a cycling protocol of 94°C for 30 seconds, 64°C for
30 seconds, and 72°C for 1 minute, repeated 30 times and followed by a 10
minute incubation at 72°C. The amplification cDNA sequences were gel-
purified and submitted to the Emory DNA Sequence Core Facility for
sequencing. The clones were sequenced using standard techniques and the
sequences were examined with PCGENE (Intelligenetics; Programs SEQUIN
and NALIGN) to determine homology to SEQ ID NO: 22. Two homologous
nucleotide sequences with putative alternative splice sites compared to SEQ ID
NO: 22 were then translated to their respective protein products with
Intelligenetic's program TRANSL.
One of these two novel human cDNA sequences (SEQ ID NO: 37)
comprises 1456 bp:
Reading frame shifts caused by the deletion of a 119 bp fragment
(between *) and the addition of a 17 bp fragment (underlined) results in a
truncated gene product having the following derived amino acid sequence
(SEQ ID NO: 38):
This 423 amino acid protein demonstrates 100% homology to the
protein shown in Sequence ID No. 10, except for the sequence in the
highlighted area (amino acids 94-99), which are due to the nucleotide changes
depicted above.
The second novel human heart cDNA sequence (SEQ ID NO: 39)
comprises 1575 bp:
Reading frame shifts caused by the addition of a 17 bp fragment
(bolded, italicized and underlined) results in an early translation stop codon at
position 565-567 (underlined).
The derived amino acid sequence (SEQ ID NO: 40) consists of 153
amino acids:
This protein demonstrates 100% homology to SEQ ID NO: 10 until
amino acid 94, where the addition of the 17 bp fragment depicted in the
nucleotide sequence results in a frame shift. Over amino acids 94-153, the
protein is not homologous to SEQ ID NO: 10. Amino acids 154-457 in SEQ ID
NO: 10 are not present due to the early stop codon depicted in nucleotide
sequence.
EXAMPLE 32; Genomic HLMP-1 Nucleotide Sequence
Applicants have identified the genomic DNA sequence encoding HLMP-
1, including putative regulatory elements associated with HLMP-1 expression.
The entire genomic sequence is shown in SEQ ID. NO: 41. This sequence
was derived from AC023788 (clone RP11-564G9). Genome Sequencing
Center, Washington University School of Medicine, St. Louis, MO.
The putative promoter region for HLMP-1 spans nucleotides 2,660-
8,733 in SEQ ID NO: 41. This region comprises, among other things, at least
ten potential glucocorticoid response elements ("GREs") (nucleotides 6148-
6153, 6226-6231, 6247-6252, 6336-6341, 6510-6515, 6552-6557, 6727-6732,
6752-6757, 7738-7743, and 8255-8260), twelve potential Sma-2 homologues
to Mothers against Drosophilla decapentaplegic ("SMAD") binding element
sites (nucleotides 3569-3575,4552-4558,4582-4588, 5226-5232,6228-6234,
6649-6655, 6725-6731, 6930-6936, 7379-7384, 7738-7742, 8073-8079, and
8378-8384), and three TATA boxes (nucleotides 5910-5913, 6932-6935, and
7380-7383). The three TATA boxes, all of the GREs, and eight of the SMAD
binding elements ("SBEs") are grouped in the region spanning nucleotides
5,841-8,733 in SEQ ID NO: 41. These regulatory elements can be used, for
example, to regulate expression of exogenous nucleotide sequences encoding
proteins involved in the process of bone formation. This would permit systemic
administration of therapeutic factors or genes relating to bone formation and
repair, as well as factors or genes associated with tissue differentiation and
development.
In addition to the putative regulatory elements, 13 exons corresponding
to the nucleotide sequence encoding HLMP-1 have been identified. These
exons span the following nucleotides in SEQ ID NO: 4V.
Exon 1 8733-8767
Exon 2 9790-9895
Exon 3 13635-13787
Exon4 13877-13907
Exon 5 14387-14502
Exon 6 15161-15297
Exon 7 15401-15437
Exon 8 16483-16545
Exon 9 16689-16923
Exon 10 18068-18248
Exon 11 22117-22240
Exon 12 22323-22440
Exon 13 22575-22911
in HLMP-2 there is another exon (Exon 5A), which spans nucleotides
14887-14904.
All cited publications and patents are hereby incorporated by reference
in their entirety.
While the foregoing specification teaches the principles of the present
invention, with examples provided for the purpose of illustration, it will be
appreciated by one skilled in the art from reading this disclosure that various
changes in form and detail can be made without departing from the true scope
of the invention.
WE CLAIM:
1. An isolated nucleic acid molecule comprising a SEQ ID NO: 37 or SEQ ID
NO:39.
2. An isolated human LMP protein encoded by SEQ ID NO: 37 or SEQ ID NO: 39.
3. A vector comprising the isolated nucleic acid molecule as claimed in claim 1.
4. A recombinant cell comprising the vector of claim 3.
5. The recombinant cell as claimed in claim 4, wherein the said cell is selected from
the group consisting of prokaryotic cells, yeast cells and mammalian cells.
6. The isolated nucleic acid molecule as claimed in claim 1, further comprising a
label such as described herein.
7. A human LIM mineralization protein comprising an amino acid sequence selected
from the group consisting of SEQ ID NO:38 and SEQ ID NO:40.
8. A monoclonal antibody specific for a HLMP-2 (SEQ ID NO:38) or HLMP-3
(SEQ ID NO:40).
9. A pharmaceutical composition for delivery into the site for inducing bone
formation and fusing spine in mammal, wherein the composition comprises a genetically
modified osteogenic precursor cell or peripheral blood leukocytes transfected ex-vivo
with an isolated nucleic acid molecule with SEQ ID No:39 or SEQ ID No :37 optionally
in association with acceptable vector.
10. A composition as claimed in claim 9, wherein the vector is an expression vector.
11. A composition as claimed in any one of claims 9 and 10, wherein the vector is
plasmid.
12. A composition^ claimed in any one of claims 9 and 10, wherein the vector is
virus.
13. A composition as claimed in any one of claims 9, 10 and 12, wherein virus is
adenovirus.
14. A composition as claimed in any one of claims 9, 10 and 12, wherein the virus is
retrovirus.
15. A composition as claimed in any one of claims 9 to 14, wherein the composition
comprises of genetically modified osteogenic precursor cells or peripheral blood
leukocytes transfected with vector comprising SEQ ID No. 37 or SEQ. ID No. 39
operably linked to a regulatable promoter, the vector is stably maintained in genetically
modified osteogenic precursor cells or peripheral blood leukocytes and regulatable
promoter responding to an exogenous control compound.
16. A pharmaceutical composition in the form of an injectable comprising an isolated
nucleic acid molecule with SEQ. ID No. 39 or SEQ. ID No. 37 in association with an
acceptable vector.
17. A composition as claimed in claim 16, wherein said vector is selected from the
group consisting of a plasmid or virus.
18. A genetically modified osteogenic precursor cells or peripheral blood leukocytes
transfected ex-vivo with an isolated nucleic acid molecule comprising SEQ ID No. 37 or
SEQ ID No. 39 capable of stimulating the production of an osteogenic soluble factor by
osteogenic cell.
19. The osteogenic soluble factor as claimed in claim 18, wherein the osteogenic factor is a
protein.
20. A composition for treating long bone fractures, bone defects, osteoporosis of hip,
vertebrae, or wrist containing (a) nucleic acid molecule comprising SEQ ID No: 39,
SEQ ID No: 37 or (b) a genetically modified osteogenic precursor cell or peripheral blood
leukocytes transfected ex-vivo with an isolated nucleic acid molecule comprising SEQ ID
No: 39 or SEQ ID No: 37 in association with an acceptable vector.
21. A composition containing a nucleic acid molecule comprising SEQ ID No: 39,
SEQ ID No: 37, or an osteogenic precursor cell or a peripheral blood leukocyte
containing said nucleic acid molecule for facilitating tumor reconstruction or spinal
fusion.
22. A composition for inhibiting the expression of HLMP-2 or HLMP-3 comprising
an antisense oligonucleotide directed against HLMP-2, or HLMP-3.
23. A composition for treating long bone fractures, bone defects, osteoporosis of hip,
vertebrae, or wrist comprising an effective amounts of (a) an isolated nucleic acid
comprising SEQ ID No: 37 or (b) an osteogenic precursor cell or peripheral blood
lymphocyte transfected with SEQ ID No: 37.
The present invention is directed to isolated nucleic acid molecules that encode LIM mineralization protein, or LMP.
The invention further provides vectors comprising splice variants of nucleotide sequences that encode LMP, as well as host cells
comprising those vectors. Moreover, the present invention relates to methods of inducing bone formation by transfecting osteogenic
precursor cells with an isolated nucleic acid molecule comprising a nucleotide sequence encoding splice variants of LIM mineralization
protein. The transfection may occur ex vivo or in vivo by direct injection of virus or naked plasmid DNA. In a particular
embodiment, the invention provides a method of fusing a spine by transfecting osteogenic precursor cells with an isolated nucleic
acid molecule having a nucleotide sequence encoding LIM mineralization protein, admixing the transfected osteogenic precursor
cells with a matrix and contacting the matrix with the spine. Finally, the invention relates to methods for inducing systemic bone
formation by stable transfection of host cells with the vectors of the invention.

Documents:


Patent Number 225008
Indian Patent Application Number IN/PCT/2001/01208/KOL
PG Journal Number 44/2008
Publication Date 31-Oct-2008
Grant Date 29-Oct-2008
Date of Filing 19-Nov-2001
Name of Patentee EMORY UNIVERSITY
Applicant Address 1380 SOUTH OXFORD ROAD, ATLANTA, GA
Inventors:
# Inventor's Name Inventor's Address
1 BODEN SCOTT D 2842 CRAVEY DRIVE N.E. ATLANTA, GA 30345
2 HAIR GREGORY A 1887 CHRYSLER DRIVE N.E. ATLANTA, GA 30345
PCT International Classification Number A61K 48/00
PCT International Application Number PCT/US00/11664
PCT International Filing date 2000-04-28
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/132,021 1999-04-30 U.S.A.