Title of Invention

"PHTHALAZINONE DERIVATIVE"

Abstract A phrhalazinone derivative of tne followina formula Or isomers, salrs, or solvates thereof.
Full Text The present invention relates to phthalazinone derivatives, and their
use as Pharmaceuticals. In particular, the present invention relates
to the use of these compounds to inhibit the activity of the enzyme
poly (ADP-ribose)polymerase, also known as poly(ADP-ribose)synthase
and poly ADP-ribosyltransferase, and commonly referred to as PARP.
The mammalian enzyme PARP (a 113-kDa multidomain protein) has been
implicated in the signalling of DNA damage through its ability to
recognize and rapidly bind to DNA single or double strand breaks
(DAmours, et al., Biochem. J., 342, 249-268 (1999)).
Several observations have led to the conclusion that PARP participates
in a variety of DNA-related functions including gene amplification,
cell division, differentiation, apoptosis, DNA base excision repair
and also effects on telomere length and chromosome stability (d'Adda
di Fagagna, et al., Nature Gen., 23(1), 76-80 (1999)).
Studies on the mechanism by which PARP modulates DNA repair and other
processes has identified its importance in the formation of poly (ADPribose)
chains within the cellular nucleus (Althaus, F.R. and Richter
C., ADP-Ribosylation of Proteins: Enzymology and Biological
Significance, Springer-Verlag, Berlin (1987)). The DNA-bound,
activated PARP utilizes NAD to synthesize poly (ADP-ribose) on a
variety of nuclear target proteins, including topoisomerase, histones
and PARP itself (Rhun, et al., Biochem. Biophys. Res. Commun., 245, 1-
10 (1998))
Poly (ADP-ribosyl)ation has also been associated with malignant
transformation. For example, PARP activity is higher in the isolated
nuclei of SV40-transformed fibroblasts, while both leukemic cells and
colon cancer cells show higher enzyme activity than the equivalent
normal leukocytes and colon mucosa (Miwa, et al., Arch. Biochem.
Biophys., 181, 313-321 (1977); Burzio, et al. , Proc. Soc. Exp. Bioi.
Med., 149, 933-938 (1975); and Hirai, et al., Cancer Res., 43, 3441-
3446 (1983)).
A number of low-molecular-weight inhibitors of PARP have been used to
elucidate the functional role of poly (ADP-ribosyl)ation in DNA
repair. In cells treated with alkylating agents, the inhibition of
PARP leads to a marked increase in DNA-strand breakage and cell
killing (Durkacz, et al., Nature, 283, 593-596 (1980); Berger, N.A.,
Radiation Research, 101, 4-14 (1985)).
Subsequently, such inhibitors have been shown to enhance the effects
of radiation response by suppressing the repair of potentially lethal
damage (Ben-Hur, et al., British Journal of Cancer, 49 (Suppl. VI),
34-42 (1984); Schlicker, et al., Int. J. Radiat. Bioi., 75, 91-100
(1999)). PARP inhibitors have been reported to be effective in radio
sensitising hypoxic tumour cells (US 5,032,617; US 5,215,738 and US
5,041,653).
Furthermore, PARP knockout (PARP -/-) animals exhibit genomic
instability in response to alkylating agents and yirradiation (Wang,
et al., Genes Dev. , 9, 509-520 (1995); Menissier de Murcia, et al.,
Proc. Natl. Acad. Sci. USA, 94, 7303-7307 (1997)).
A role for PARP has also been demonstrated in certain vascular
diseases, septic shock, ischaemic injury and neurotoxicity (Cantoni,
et al., Biochim. Biophys. Acta, 1014, 1-7 (1989); Szabo, et al., J.
Clin. Invest., 100, 723-735 (1997)). Oxygen radical DNA damage that
leads to strand breaks in DNA, which are subsequently recognised by
PARP, is a major contributing factor to such disease states as shown
by PARP inhibitor studies (Cosi, et al., J. Neurosci. Res., 39, 38-46
(1994); Said, et al., Proc. Natl. Acad. Sci. U.S.A., 93, 4688-4692
(1996)). More recently, PARP has been demonstrated to play a role in
the pathogenesis of haemorrhagic shock (Liaudet, et al., Proc. Natl.
Acad. Sci. U.S.A., 97(3), 10203-10208 (2000)).
It has also been demonstrated that efficient retroviral infection of
mammalian cells is blocked by the inhibition of PARP activity. Such
inhibition of recombinant retroviral vector infections was shown to
occur in various different cell types (Gaken, et al. , J. Virology,
70(6), 3992-4000 (1996)). Inhibitors of PARP have thus been developed
for the use in anti-viral therapies and in cancer treatment (WO
91/18591).
Moreover, PARP inhibition has been speculated to delay the onset of
aging characteristics in human fibroblasts (Rattan and Clark, Biochem,
Biophys. Res. Conrn., 201(2), 665-672 (1994)). This maybe related to
the role that PARP plays in controlling telomere function (d'Adda di
Fagagna, et al. , Nature Gen., 23(1), 76-80 (1999)).
Some of the present inventors have previously described (WO 02/36576)
a class of 1(2H)-phthalazinone compounds which act as PARP inhibitors
The compounds have the general formula:
(Figure Removed)
where A and B together represent an optionally substituted, fused
aromatic ring and where Rc is represented by -L-RL. A large number of
examples are of the formula:
(Figure Removed)

where R represent one or more optional substituents.
The present inventors have now discovered that compounds where R is ol:
a certain nature exhibit surprising levels of inhibition of the
activity of PARP, and/or of potentiation of tumour cells to
radiotherapy and various chemotherapies.
Accordingly, the first aspect of the present invention provides a
compound of the formula (I):
RC1RC2
and isomers, salts, solvates, chemically protected forms, and prodrug$
thereof
wherein:
A and B together represent an optionally substituted, fused aromatic
ring;
X can be NRX or CRXRY;
if X = NRX then n is 1 or 2 and if X = CRXRY then n is 1;
Rx is selected from the group consisting of H, optionally substituted
C1-20 alkyl, C5-2o aryl, C3-2o heterocyclyl, amido, thioamido, ester, acyl,
and sulfonyl groups;
RY is selected from H, hydroxy, amino;
or Rx and RY may together form a spiro-C3-7 cycloalkyl or heterocyclyl
group;
RC1 and RC2 are both hydrogen, or when X is CRXRY, Rcl, RC2, Rx and RY,
together with the carbon atoms to which they are attached, may form a
optionally substituted fused aromatic ring; and
R1 is selected from H and halo.
Therefore, if X is CRXRY, then n is 1, the compound is of formula (la)
(Figure Removed)

If X is NRX, and n is 1, the compound is of formula (Ib):
(Figure Removed)

If X is NRX, and n is 2, the compound is of formula (Ic)
(Figure Removed)

A second aspect of the present invention provides a pharmaceutical
composition comprising a compound of the first aspect and a
pharmaceutically acceptable carrier or diluent.
A third aspect of the present invention provides a compound of the
first aspect for use in a method of treatment of the human or animal
body.
A fourth aspect of the present invention provides the use of a
compound as defined in the first aspect of the invention in the
preparation of a medicament for inhibiting the activity of PARP.
Further aspects of the invention provide the use of a compound as
defined in the first aspect of the invention in the preparation of a
medicament for the treatment of: vascular disease; septic shock;
ischaemic injury; neurotoxicity; haemorraghic shock; viral infection;
or diseases ameliorated by the inhibition of the activity of PARP.
Another further aspect of the invention provides for the use of a
compound as defined in the first aspect of the invention in the
preparation of a medicament for use as an adjunct in cancer therapy or
for potentiating tumour cells for treatment with ionizing radiation or
chemotherapeutic agents.
Other further aspects of the invention provide for the treatment of
disease ameliorated by the inhibition of PARP, comprising
administering to a subject in need of treatment a therapeuticallyef
fective amount of a compound as defined in the first aspect,
preferably in the form of a pharmaceutical composition and the
treatment of cancer, comprising administering to a subject in need of
treatment a therapeutically-effective amount of a compound as defined
in the first aspect in combination, preferably in the form of a
pharmaceutical composition, simultaneously or sequentially with
ionizing radiation or chemotherapeutic agents.
In further aspects of the present invention, the compounds may be used
in the preparation of a medicament for the treatment of cancer which
is deficient in Homologous Recombination (HR) dependent DNA DSB repair
activity, or in the treatment of a patient of a cancer which is
deficient in HR dependent DNA DSB repair activity, comprising
administering to said patient a therapeutically-effective amount of
the compound.
The HR dependent DNA DSB repair pathway repairs double-strand breaks
(DSBs) in DNA via homologous mechanisms to reform a continuous DNA
helix (K.K. Khanna and S.P. Jackson, Nat. Genet. 27(3): 247-254
(2001)). The components of the HR dependent DNA DSB repair pathway
include, but are not limited to, ATM (NM_000051), RAD51 (NM_002875),
RAD51L1 (NM_002877), RAD51C (NM_002876), RAD51L3 (NM_002878), DMC1
(NM_007068), XRCC2 (NM_005431), XRCC3 (NM_005432), RAD52 (NM_002879),
RAD54L (NM_003579), RAD54B (NM_012415), BRCA1 (NM_007295), BRCA2
(NM_000059), RAD50 (NM_005732), MRE11A (NM_005590) andNBSl
(NM_002485). Other proteins involved in the HR dependent DNA DSB
repair pathway include regulatory factors such as EMSY (Hughes-Davies
et al., Cell, 115, pp523-535). HR components are also described in
Wood, et al., Science, 291, 1284-1289 (2001).
A cancer which is deficient in HR dependent DNA DSB repair may
comprise or consist of one or more cancer cells which have a reduced
or abrogated ability to repair DNA DSBs through that pathway, relative
to normal cells i.e. the activity of the HR dependent DNA DSB repair
pathway may be reduced or abolished in the one or more cancer cells.
The activity of one or more components of the HR dependent DNA DSB
repair pathway may be abolished in the one or more cancer cells of an
individual having a cancer which is deficient in HR dependent DNA DSB
repair. Components of the HR dependent DNA DSB repair pathway are well
characterised in the art (see for example, Wood, et al., Science, 291,
1284-1289 (2001)) and include the components listed above.
In some preferred embodiments, the cancer cells may have a BRCA1
j
and/or a BRCA2 deficient phenotype i.e. BRCA1 and/or BRCA2 activity is
reduced or abolished in the cancer cells. Cancer cells with this
phenotype may be deficient in BRCA1 and/or BRCA2, i.e. expression
and/or activity of BRCA1 and/or BRCA2 may be reduced or abolished in
the cancer cells, for example by means of mutation or polymorphism in
the encoding nucleic acid, or by means of amplification, mutation or
polymorphism in a gene encoding a regulatory factor, for example the
EMSY gene which encodes a BRCA2 regulatory factor (Hughes-Davies, et
al. , Cell, 115, 523-535) .
BRCA1 and BRCA2 are known tumour suppressors whose wild-type alleles
are frequently lost in tumours of heterozygous carriers (Jasin M.,
Oncogene, 21(58), 8981-93 (2002); Tutt, et al., Trends Mol Med.,
8(12), 571-6, (2002)). The association of BRCA1 and/or BRCA2 mutation
with breast cancer is well-characterised in the art (Radice, P.J.,
Exp Clin Cancer Res., 21(3 Suppl), 9-12 (2002)). Amplification of the
EMSY gene, which encodes a BRCA2 binding factor, is also known to be
associated with breast and ovarian cancer.
Carriers of mutations in BRCA1 and/or BRCA2 are also at elevated risk
of cancer of the ovary, prostate and pancreas.
In some preferred embodiments, the individual is heterozygous for one
or more variations, such as mutations and polymorphisms, in BRCA1
and/or BRCA2 or a regulator thereof. The detection of variation in
BRCA1 and BRCA2 is well-known in the art and is described, for example
in EP 699 754, EP 705 903, Neuhausen, S.L. and Ostrander, E.A., Genet,
Test, 1, 75-83 (1992); Chappnis, P.O. and Foulkes, W.D., Cancer Treat
Res, 107, 29-59 (2002); Janatova M., et al., Neoplasma, 50(4), 246-50j
(2003); Jancarkova, N., Ceska Gynekol., 68(1), 11-6 (2003)).
Determination of amplification of the BRCA2 binding factor EMSY is
described in Hughes-Davies, et al., Cell, 115, 523-535).
Mutations and polymorphisms associated with cancer may be detected at
the nucleic acid level by detecting the presence of a variant nucleic
acid sequenc or at the protein level by detecting the presence of a
variant (i.e. a mutant or allelic variant) polypeptide.
Definitions
The term "aromatic ring" is used herein in the conventional sense to
refer to a cyclic aromatic structure, that is, a cyclic structure
having delocalised n-electron orbitals.
The aromatic ring fused to the main core, i.e. that formed by -A-B-,
may bear further fused aromatic rings (resulting in, e.g. naphthyl or
anthracenyl groups). The aromatic ring(s) may comprise solely carbon
atoms, or may comprise carbon atoms and one or more heteroatoms,
including but not limited to, nitrogen, oxygen, and sulfur atoms. Th
aromatic ring(s) preferably have five or six ring atoms.
The aromatic ring(s) may optionally be substituted. If a substituent
itself comprises an aryl group, this aryl group is not considered to
be a part of the aryl group to which it is attached. For example, the
group biphenyl is considered herein to be a phenyl group (an aryl
group comprising a single aromatic ring) substituted with a phenyl
group. Similarly, the group benzylphenyl is considered to be a pheny:.
group (an aryl group comprising a single aromatic ring) substituted
with a benzyl group.
In one group of preferred embodiments, the aromatic group comprises a
single aromatic ring, which has five or six ring atoms, which ring
atoms are selected from carbon, nitrogen, oxygen, and sulfur, and
which ring is optionally substituted. Examples of these groups
include, but are not limited to, benzene, pyrazine, pyrrole,
thiazole, isoxazole, and oxazole. 2-Pyrone can also be considered to
be an aromatic ring, but is less preferred.
If the aromatic ring has six atoms, then preferably at least four, or
even five or all, of the ring atoms are carbon. The other ring atoms
are selected from nitrogen, oxygen and sulphur, with nitrogen and
oxygen being preferred. Suitable groups include a ring with: no
hetero atoms (benzene); one nitrogen ring atom (pyridine); two
nitrogen ring atoms (pyrazine, pyrimidine and pyridazine) , one oxygen
ring atom (pyrone); and one oxygen and one nitrogen ring atom
(oxazine).
If the aromatic ring has five ring atoms, then preferably at least
three of the ring atoms are carbon. The remaining ring atoms are
selected from nitrogen, oxygen and sulphur. Suitable rings include a
ring with: one nitrogen ring atom (pyrrole); two nitrogen ring atoms
(imidazole, pyrazole); one oxygen ring atom (furan); one sulphur ring
atom (thiophene) ,- one nitrogen and one sulphur ring atom (isothiazole,
thiazole); and one nitrogen and one oxygen ring atom (isoxazole or
oxazole).
The aromatic ring may bear one or more substituent groups at any
available ring position. These substituents are selected from halo,
nitro, hydroxy, ether, thiol, thioether, amino, C1-7 alkyl, C3-20
heterocyclyl and C5.20 aryl. The aromatic ring may also bear one or
more substituent groups which together form a ring. In particular
these may be of formula -(CH2)m- or -O- (CH2)P-0-, where m is 2, 3, 4 or)
5 and p is 1, 2 or 3.
Alkyl: The term "alkyl" as used herein, pertains to a monovalent
moiety obtained by removing a hydrogen atom from a carbon atom of a
hydrocarbon compound having from 1 to 20 carbon atoms (unless
otherwise specified), which may be aliphatic or alicyclic, and which
may be saturated or unsaturated (e.g. partially unsaturated, fully
unsaturated). Thus, the term "alkyl" includes the sub-classes
alkenyl, alkynyl, cycloalkyl, cycloalkyenyl, cylcoalkynyl, etc.,
discussed below.
In the context of alkyl groups, the prefixes (e.g. C1-4, C1-7, C1-20, C2-7
C3-7, etc.) denote the number of carbon atoms, or range of number of
carbon atoms. For example, the term "C1-4 alkyl", as used herein,
pertains to an alkyl group having from 1 to 4 carbon atoms. Examples
of groups of alkyl groups include C1-4 alkyl ("lower alkyl"), C1-7 alkyl
and C1-20 alkyl. Note that the first prefix may vary according to other
limitations; for example, for unsaturated alkyl groups, the first
prefix must be at least 2; for cyclic alkyl groups, the first prefix
must be at least 3; etc.
Examples of (unsubstltuted) saturated alkyl groups include, but are
not limited to, methyl (CJ , ethyl (C2) , propyl (C3) , butyl (C4) , pentyl
(C5) , hexyl (C6) , heptyl (C7) , octyl (C8) , nonyl (C9) , decyl (C10) ,
undecyl (C11) , dodecyl (C12) , tridecyl (C13) , tetradecyl (C14) ,
pentadecyl (C15) , and eicodecyl (C20)
Examples of (unsubstltuted) saturated linear alkyl groups include, but
are not limited to, methyl (CJ , ethyl (C2) , n-propyl (C3) , n-butyl
(C4) , n-pentyl (amyl) (C5) , n-hexyl (C6) , and n-heptyl (C7) .
Examples of (unsubstituted) saturated branched alkyl groups include
iso-propyl (C3) , iso-butyl (CJ , sec-butyl (C4), tert-butyl (C4) , isopentyl
(C5) , and neo-pentyl (Cs) .
Alkenyl: The term "alkenyl", as used herein, pertains to an alkyl
group having one or more carbon-carbon double bonds. Examples of
groups of alkenyl groups include C2.4 alkenyl, C2.7 alkenyl, C2-20 alkenyl
Examples of (unsubstituted) unsaturated alkenyl groups include, but
are not limited to, ethenyl (vinyl, -CH=CH2) , 1-propenyl (-CH=CH-CH3) ,
2-propenyl (allyl, -CH-CH=CH2) , isopropenyl (1-methylvinyl,
-C(CH3)=CH2) , butenyl (C4) , pentenyl (C5) , and hexenyl (C6) .
Alkynyl: The term "alkynyl", as used herein, pertains to an alkyl
group having one or more carbon-carbon triple bonds. Examples of
groups of alkynyl groups include C2-4 alkynyl, C2-7 alkynyl, C2-20 alkynyl
Examples of (unsubstituted) unsaturated alkynyl groups include, but
are not limited to, ethynyl (ethinyl, -C=CH) and 2-propynyl
(propargyl, -CH2-C=CH).
Cycloalkyl: The term "cycloalkyl", as used herein, pertains to an
alkyl group which is also a cyclyl group; that is, a monovalent moiety
obtained by removing a hydrogen atom from an alicyclic ring atom of a
carbocyclic ring of a carbocyclic compound, which carbocyclic ring may
be saturated or unsaturated (e.g. partially unsaturated, fully
unsaturated), which moiety has from 3 to 20 carbon atoms (unless
otherwise specified), including from 3 to 20 ring atoms. Thus, the
term "cycloalkyl" includes the sub-classes cycloalkenyl and
cycloalkynyl. Preferably, each ring has from 3 to 7 ring atoms.
Examples of groups of cycloalkyl groups include C3-2o cycloalkyl, C3-15
cycloalkyl, C3.10 cycloalkyl, C3.7 cycloalkyl.
Examples of cycloalkyl groups include, but are not limited to, those
derived from:
saturated monocyclic hydrocarbon compounds:
cyclopropane (C3) , cyclobutane (C4) , cyclopentane (C5), cyclohexane
(C6), cycloheptane (C7) , methylcyclopropane (C4) , dimethylcyclopropane
(C5) , methylcyclobutane (C5) , dimethylcyclobutane (C6) ,
methylcyclopentane (C6) , dimethylcyclopentane (C7) ,
methyl cyclohexane (C7) , dimethylcyclohexane (C8) , menthane (C10) ;
unsaturated monocyclic hydrocarbon compounds:
cyclopropene (C3) , cyclobutene (C4) , cyclopentene (C5) ,
cyclohexene (C6) , methylcyclopropene (C4) , dimethylcyclopropene (C5) ,
methylcyclobutene (C5) , dimethylcyclobutene (C6) , methylcyclopentene
(C6), dimethylcyclopentene (C7) , methylcyclohexene (C7) ,
dimethylcyclohexene (C8) ;
saturated polycyclic hydrocarbon compounds:
thujane (C10) , carane (C10) , pinane (C10) , bornane (C10) , norcarane (C7) ,
norpinane (C7) , norbornane (C7) , adamantane (C10) , decalin
(dec ahydronapht ha 1 ene) (C10) ;
unsaturated polycyclic hydrocarbon compounds:
camphene (C10) , limonene (C10) , pinene (Ci0) ;
polycyclic hydrocarbon compounds having an aromatic ring:
indene (C9) , indane (e.g., 2,3-dihydro-lH-indene) (C9) , tetraline
(1,2,3,4-tetrahydronaphthalene) (C10), acenaphthene (C12), fluorene
(C13) , phenalene (C13) , acephenanthrene (C15) , aceanthrene (C16) ,
cholanthrene (C20) Heterocyclyl: The term "heterocyclyl", as used herein, pertains to ;
monovalent moiety obtained by removing a hydrogen atom from a ring
atom of a heterocyclic compound, which moiety has from 3 to 20 ring
atoms (unless otherwise specified), of which from 1 to 10 are ring
heteroatoms. Preferably, each ring has from 3 to 7 ring atoms, of
which from 1 to 4 are ring heteroatoms.
In this context, the prefixes (e.g. C3-20, C3-7, Cs-6, etc.) denote the
number of ring atoms, or range of number of ring atoms, whether carbon
atoms or heteroatoms. For example, the term "C5_6heterocyclyl", as used
herein, pertains to a heterocyclyl group having 5 or 6 ring atoms.
Examples of groups of heterocyclyl groups include C3-20 heterocyclyl,
C5_20 heterocyclyl, C3.15 heterocyclyl, C5.15 heterocyclyl, C3-12
heterocyclyl, C5_12 heterocyclyl, C3.10 heterocyclyl, C5-10 heterocyclyl,
C3_7 heterocyclyl, C5.7 heterocyclyl, and C5-6 heterocyclyl.
Examples of monocyclic heterocyclyl groups include, but are not
limited to, those derived from:
N!: aziridine (C3) , azetidine (CJ , pyrrolidine (tetrahydropyrrole)
(C5), pyrroline (e.g., 3-pyrroline, 2,5-dihydropyrrole) (C5) ,
2H-pyrrole or 3H-pyrrole (isopyrrole, isoazole) (C5) , piperidine (C6) ,
dihydropyridine (C6) , tetrahydropyridine (C6) , azepine (C7) ;
Ol: oxirane (C3) , oxetane (C4) , oxolane (tetrahydrofuran) (C5) , oxole
(dihydrofuran) (C5) , oxane (tetrahydropyran) (C6) , dihydropyran (C6) ,
pyran (C6) , oxepin (C7) ;
Sl: thiirane (C3) , thietane (CJ , thiolane (tetrahydrothiophene) (C5) ,
thiane (tetrahydrothiopyran) (C6) , thiepane (C7) ;
02: dioxolane (C5) , dioxane (C6) , and dioxepane (C7)
03: trioxane (C6) ;
N2: imidazolidine (C5) , pyrazolidine (diazolidine) (C5) , imidazoline
(C5), pyrazoline (dihydropyrazole) (C5) , piperazine (C6) ;
NiOx: tetrahydrooxazole (C5) , dihydrooxazole (C5) , tetrahydroisoxazole
(C5), dihydroisoxazole (C5) , morpholine (C6) , tetrahydrooxazine (C6) ,
dihydrooxazine (C6), oxazine (C6) ;
NiS1: thiazoline (C5) , thiazolidine (C5) , thiomorpholine (C6) ;
N20!: oxadiazine (C6) ;
OiSi-. oxathiole (C5) and oxathiane (thioxane) (C6) ; and,
NjOiS!: oxathiazine (C6) .
Examples of substituted (non-aromatic) monocyclic heterocyclyl groups
include those derived from saccharides, in cyclic form, for example,
furanoses (C5) , such as arabinofuranose, lyxofuranose, ribofuranose,
and xylofuranse, and pyranoses (C6) , such as allopyranose,
altropyranose, glucopyranose, mannopyranose, gulopyranose,
idopyranose, galactopyranose, and talopyranose.
Spiro-C3.7 cycloalkyl or heterocyclyl: The term "spiro C3-7 cycloalkyl
or heterocyclyl" as used herein, refers to a C3.7 cycloalkyl or C3.7
heterocyclyl ring joined to another ring by a single atom common to
both rings.
C5-2o aryl: The term "C5.20 aryl" as used herein, pertains to a monovaler.t
moiety obtained by removing a hydrogen atom from an aromatic ring aton
of a C5_2o aromatic compound, said compound having one ring, or two or
more rings (e.g., fused), and having from 5 to 20 ring atoms, and
wherein at least one of said ring(s) is an aromatic ring. Preferably,
each ring has from 5 to 7 ring atoms.
The ring atoms may be all carbon atoms, as in "carboaryl groups" in
which case the group may conveniently be referred to as a "C5.20
carboaryl" group.
Examples of C5_20 aryl groups which do not have ring heteroatoms
(i.e. C5_20 carboaryl groups) include, but are not limited to, those
derived from benzene (i.e. phenyl) (C6) , naphthalene (C10), anthracene
(C14) , phenanthrene (C14) , and pyrene (C16) .
Alternatively, the ring atoms may include one or more heteroatoms,
including but not limited to oxygen, nitrogen, and sulfur, as in
"heteroaryl groups". In this case, the group may conveniently be
referred to as a "C5.2o heteroaryl" group, wherein "C5.20" denotes ring
atoms, whether carbon atoms or heteroatoms. Preferably, each ring has;
from 5 to 7 ring atoms, of which from 0 to 4 are ring heteroatoms.
Examples of C5.20 heteroaryl groups include, but are not limited to, C5
heteroaryl groups derived from furan (oxole), thiophene (thiole),
pyrrole (azole), imidazole (1,3-diazole), pyrazole (1,2-diazole),
triazole, oxazole, isoxazole, thiazole, isothiazole, oxadiazole,
tetrazole and oxatriazole; and C6 heteroaryl groups derived from
isoxazine, pyridine (azine), pyridazine (1,2-diazine) , pyrimidine
(1,3-diazine; e.g., cytosine, thymine, uracil), pyrazine (1,4-diazine
and triazine.
The heteroaryl group may be bonded via a carbon or hetero ring atom.
Examples of Cs.2a heteroaryl groups which comprise fused rings, include,
but are not limited to, C9 heteroaryl groups derived from benzofuran,
isobenzofuran, benzothiophene, indole, isoindole; C10 heteroaryl groupi
derived from quinoline, isoquinoline, benzodiazine, pyridopyridine; C:
heteroaryl groups derived from acridine and xanthene.
The above alkyl, heterocyclyl, and aryl groups, whether alone or part
of another substituent, may themselves optionally be substituted with
one or more groups selected from themselves and the additional
substituents listed below.
Halo: -F, -Cl, -Br, and -I.
Hydroxy: -OH.
Ether: -OR, wherein R is an ether substituent, for example, a Ci.7 alkyjl
group (also referred to as a d-? alkoxy group) , a d-zo heterocyclyl
group (also referred to as a C3.20 heterocyclyloxy group) , or a C5_20 aryp.
group (also referred to as a C5.20 aryloxy group) , preferably a d-7
alkyl group.
Nitro: -N02.
Cyano (nitrile, carbonitrile): -CN.
Acyl (keto): -C(=O)R, wherein R is an acyl substituent, for example,
H, a d-v alkyl group (also referred to as d.7 alkylacyl or d.7
alkanoyl) , a d-zo heterocyclyl group (also referred to as d-zo
heterocyclylacyl) , or a C5.2o aryl group (also referred to as C5.20
arylacyl) , preferably a C^-, alkyl group. Examples of acyl groups
include, but are not limited to, -C(=0)CH3 (acetyl), -C(=0)CH2CH3
(propionyl), -C(=0)C (CH3)3 (butyryl), and -C(=0)Ph (benzoyl, phenone) .
Carboxy (carboxylic acid): -COOH.
Ester (carboxylate, carboxylic acid ester, oxycarbonyl): -C(=0)OR,
wherein R is an ester substituent, for example, a d_7 alkyl group, a
C3.20 heterocyclyl group, or a Cs.20 aryl group, preferably a Ci.7 alkyl
group. Examples of ester groups include, but are not limited to,
C(=0)OCH3/ -C(=0)OCH2CH3, -C(=0) OC (CH3) 3, and -C(=0)OPh.
Amido (carbamoyl, carbamyl, aminocarbonyl, carboxamide): -C(=0)NR1R2,
wherein R1 and R2 are independently amino substituents, as defined for
amino groups. Examples of amido groups include, but are not limited
to, -C(=0)NH2, -C(=0)NHCH3, -C (=O) N (CH3) 2, -C (=0) NHCH2CH3, and
-C(=O)N(CH2CH3) 2, as well as amido groups in which R1 and R2, together
with the nitrogen atom to which they are attached, form a heterocyclicj:
structure as in, for example, piperidinocarbonyl, morpholinocarbonyl,
thiomorpholinocarbonyl, and piperazinylcarbonyl.
Amino: -NR^2, wherein R1 and R2 are independently amino substituents,
for example, hydrogen, a C^, alkyl group (also referred to as Ci_7
alkylamino or di-C^ alkylamino) , a C3.20 heterocyclyl group, or a C5_20
aryl group, preferably H or a Cj., alkyl group, or, in the case of a
"cyclic" amino group, R1 and R2, taken together with the nitrogen atom
to which they are attached, form a heterocyclic ring having from 4 to
8 ring atoms. Examples of amino groups include, but are not limited
to, -NH2, -NHCH3, -NHCH(CH3)2, -N(CH3)2/ -N(CH2CH3)2, and -NHPh. Example|s
of cyclic amino groups include, but are not limited to, aziridinyl,
azetidinyl, pyrrolidinyl, piperidino, piperazinyl, perhydrodiazepinyl
morpholino, and thiomorpholino. The cylic amino groups may be
substituted on their ring by any of the substituents defined here, for
example carboxy, carboxylate and amido.
Acylamido (acylamino): -NRaC(=0)R2, wherein R1 is an amide substituent,
for example, hydrogen, a Ca.7 alkyl group, a C3.20 heterocyclyl group, or
a Cs.20 aryl group, preferably H or a Ca_7 alkyl group, most preferably H
and R2 is an acyl substituent, for example, a C^., alkyl group, a C3.20
heterocyclyl group, or a C5.20 aryl group, preferably a Ci.7 alkyl group
Examples of acylamide groups include, but are not limited to,
-NHC(=0)CH3 , -NHC(=O)CH2CH3, and -NHC(=0)Ph. R1 and R2 may together
form a cyclic structure, as in, for example, succinimidyl, maleimidyl
and phthalimidyl:
succinimidyl maleimidyl phthalimidyl
Ureido: -N(R:) CONR2R3 wherein R2 and R3 are independently amino
substituents, as defined for amino groups, and Rl is a ureido
substituent, for example, hydrogen, a C^alkyl group, a
C3_20heterocyclyl group, or a C5.20aryl group, preferably hydrogen or a
Chalky! group. Examples of ureido groups include, but are not
limited to, -NHCONH2, -NHCONHMe, -NHCONHEt, -NHCONMe2, -NHCONEt2, -
NMeCONH2, -NMeCONHMe, -NMeCONHEt, -NMeCONMe2, -NMeCONEt2 and -
NHC(=0)NHPh.
Acyloxy (reverse ester): -OC(=0)R, wherein R is an acyloxy
substituent, for example, a C^., alkyl group, a C3.20 heterocyclyl group
or a C5.20 aryl group, preferably a Ci_7 alkyl group. Examples of
acyloxy groups include, but are not limited to, -OC(=O)CH3 (acetoxy),
OC(=0)CH2CH3, -OC(=0)C(CH3)3, -OC(=O)Ph, -OC (=0) C6H4F, and -OC (=0) CH2Ph.
Thiol : -SH.
Thioether (sulfide): -SR, wherein R is a thioether substituent, for
example, a C^ alkyl group (also referred to as a Ci_7 alkylthio group)
a C3.20 heterocyclyl group, or a C5.20 aryl group, preferably a C^, alkyl
group. Examples of C^ alkylthio groups include, but are not limited
to, -SCH3 and -SCH2CH3.
Sulfoxide (sulfinyl): -S(=O)R, wherein R is a sulfoxide substituent,
for example, a Ci_7 alkyl group, a C3_20 heterocyclyl group, or a C5.20
aryl group, preferably a C^, alkyl group. Examples of sulfoxide groups
include, but are not limited to, -S(=0)CH3 and -S (=0) CH2CH3.
Sulfonyl (sulfone): -S(=0)2R, wherein R is a sulfone substituent, for
example, a C^ alkyl group, a C3.2o heterocyclyl group, or a C5_20 aryl
group, preferably a C^ alkyl group. Examples of sulfone groups
include, but are not limited to, -S(=0)2CH3 (methanesulfonyl, mesyl),
-S(=0)2CF3, -S (=0)2CH2CH3/ and 4-methylphenylsulfonyl (tosyl) .
Thioamido (thiocarbamyl) : -C( = S)NR1R2, wherein R1 and R2 are
independently amino substituents, as defined for amino groups.
Examples of amido groups include, but are not limited to, -C(=S)NH2,
-C( = S)NHCH3, -C(=S)N(CH3)2, and -C (=S) NHCH2CH3.
Sulfonamino: -NR1S(=O)2R, wherein R1 is an amino substituent, as
defined for amino groups, and R is a sulfonamino substituent, for
example, a Chalky 1 group, a C3.20heterocyclyl group, or a Cs_20aryl
group, preferably a Chalky 1 group. Examples of sulfonamino groups
include, but are not limited to, -NHS(=0) 2CH3, -NHS(=0)2Ph and
-N(CH3)S(=0)2C6H5.
As mentioned above, the groups that form the above listed substituent
groups, e.g. C^ alkyl, C3.20 heterocyclyl and C5.20 aryl, may themselve^
be substituted. Thus, the above definitions cover substituent groups
which are substituted.
Brief Description of Figures
Figure 1 shows clonogenic survival curves of cells exposed to
compound (4) of the present invention.
Figure 1A shows Brcal wild type (11CO:B), heterozygous (Cre6:A) and
deficient (CrelO:*) ES cells under continuous exposure to compound 4.
Error bars represent standard errors of the mean.
Figure IB shows Brca2 wild type (D3:B), heterozygous (Cre6:A) and
deficient (Cre24:») ES cells under continuous exposure to compound 4.
Error bars represent standard errors of the mean.
Figure 2 shows an analysis of the effects of a compound of the
invention (4) in another cell line lacking BRCA2 function in
comparison to a BRCA2 complemented line. Data shown is clonogenic
survival of Brca2 deficient (V-C8:B) and complemented (V-C8 BAC+:A)
cells under continuous exposure to compound 4 at varying
concentrations.
Further Preferences
The following preferences can apply to each aspect of the present
invention, where applicable.
In the present invention, the fused aromatic ring(s) represented by -
A-B- preferably consist of solely carbon ring atoms, and thus may be
benzene, naphthalene, and is more preferably benzene. As described
above, these rings may be substituted, but in some embodiments are
preferably unsubstituted.
If the fused aromatic ring represented by -A-B- bears a substituent
group, it is preferably attached to the atom which itself is attached
to the central ring meta- to the carbonyl group. Thus, if the fused
aromatic ring is a benzene ring, the preferred place of substitution
is shown in the formula below by *:
RC1RC2
which is usually termed the 5-position of the phthalazinone moiety.
R1 is preferably selected from H, Cl and F, and is more preferably F.
It is preferred that RC1 and RC2 are both hydrogen.
When n is 2, X is NRX. In these embodiments, Rx is preferably selecte
from the group consisting of: H; optionally substituted C^o alkyl;
optionally substituted C5.20 aryl; optionally substituted ester groups,
wherein the ester substituent is preferably C^o alkyl; optionally
substituted acyl groups; optionally substituted amido groups;
optionally substituted thioamido groups; and optionally substituted
sulfonyl groups. Rx is more preferably selected from the group
consisting of: H; optionally substituted C^Q alkyl; optionally
substituted C5_20 aryl; and optionally substituted ester groups, wherei|n
the ester substituent is preferably Cj.2o alkyl.
When n is 1, X may be NRX or CRXCRY.
In embodiments where X is NRX, Rx is preferably selected from the grou|p
consisting of: H; optionally substituted Ci-20 alkyl; optionally
substituted C5.20 aryl; optionally substituted acyl; optionally
substituted sulfonyl; optionally substituted amido; and optionally
substituted thioamido groups.
In embodiments where X is CRXRY, RY is preferably H. Rx is preferably
selected from the group consisting of: H; optionally substituted C^o
alkyl; optionally substituted C5.20 aryl; optionally substituted C3.20
heterocyclyl; optionally substituted acyl, wherein the acyl
substituent is preferably selected from C5.20 aryl and C3-20 heterocylyl
(e.g. piperazinyl) ,• optionally substituted amido, wherein the amino
groups are preferably selected from H and C^o alkyl or together with
the nitrogen atom, form a C5.20 heterocyclic group; and optionally
substituted ester groups, wherein the ester substituent is preferably
selected from C^o alkyl groups.
Particularly preferred compounds include: 1, 2, 3, 4, 10, 21, 74, 97,
152, 153, 163, 167, 169, 173, 185, 232, 233, 250, 251, 252, 260 and
263.
Where appropriate, the above preferences may be taken in combination
with each other.
Includes Other Forms
Included in the above are the well known ionic, salt, solvate, and
protected forms of these substituents. For example, a reference to
carboxylic acid (-COOH) also includes the anionic (carboxylate) form
(-COO"), a salt or solvate thereof, as well as conventional protected
forms. Similarly, a reference to an amino group includes the
protonated form (-N+HR1R2), a salt or solvate of the amino group, for
example, a hydrochloride salt, as well as conventional protected forms;
of an amino group. Similarly, a reference to a hydroxyl group also
includes the anionic form (-0"), a salt or solvate thereof, as well as
conventional protected forms of a hydroxyl group.
Isomers, Salts, Solvates, Protected Forms, and Prodrugs
Certain compounds may exist in one or more particular geometric,
optical, enantiomeric, diasteriomeric, epimeric, stereoisomeric,
tautomeric, conformational, or anomeric forms, including but not
limited to, cis- and trans-forms; E- and /-forms; c-, t-, and r-forms
endo- and exo-forms; R-, S-, and meso-forms; D- and L-forms; d- and 1
forms; ( + ) and (-) forms; keto-, enol-, and enolate-forms; syn- and
anti-forms; synclinal- and anticlinal-forms; a- and (3-forms; axial an equatorial forms; boat-, chair-, twist-, envelope-, and halfchairforms;
and combinations thereof, hereinafter collectively referred to
as "isomers" (or "isomeric forms").
If the compound is in crystalline form, it may exist in a number of
different polymorphic forms.
Note that, except as discussed below for tautomeric forms,
specifically excluded from the term "isomers", as used herein, are
structural (or constitutional) isomers (i.e. isomers which differ in
the connections between atoms rather than merely by the position of
atoms in space). For example, a reference to a methoxy group, -OCH3,
is not to be construed as a reference to its structural isomer, a
hydroxymethyl group, -CH2OH. Similarly, a reference to orthochlorophenyl
is not to be construed as a reference to its structural
isomer, meta-chlorophenyl. However, a reference to a class of
structures may well include structurally isomeric forms falling within
that class (e.g., d.7 alkyl includes n-propyl and iso-propyl; butyl
includes n-, iso-, sec-, and tert-butyl; methoxyphenyl includes ortho-
, meta-, and para-methoxyphenyl).
The above exclusion does not pertain to tautomeric forms, for example,
keto-, enol-, and enolate-forms, as in, for example, the following
tautomeric pairs: keto/enol, imine/enamine, amide/imino alcohol,
amidine/amidine, nitroso/oxime, thioketone/enethiol, Nnitroso/
hyroxyazo, and nitro/aci-nitro.
Particularly relevant to the present invention is the tautomeric pair
illustrated below:
Note that specifically included in the term "isomer" are compounds
with one or more isotopic substitutions. For example, H may be in an
isotopic form, including 1H, 2H (D) , and 3H (T); C may be in any
isotopic form, including 12C, 13C, and 14C; O may be in any isotopic
form, including 160 and 180; and the like.
Unless otherwise specified, a reference to a particular compound
includes all such isomeric forms, including (wholly or partially)
racemic and other mixtures thereof. Methods for the preparation
(e.g. asymmetric synthesis) and separation (e.g. fractional
crystallisation and chromatographic means) of such isomeric forms are
either known in the art or are readily obtained by adapting the
methods taught herein, or known methods, in a known manner.
Unless otherwise specified, a reference to a particular compound also
includes ionic, salt, solvate, and protected forms of thereof, for
example, as discussed below, as well as its different polymorphic
forms.
It may be convenient or desirable to prepare, purify, and/or handle a
corresponding salt of the active compound, for example, a
pharmaceutically-acceptable salt. Examples of pharmaceutically
acceptable salts are discussed in Berge, et al., "Pharmaceutically
Acceptable Salts", J. Pharm. Sci., 66, 1-19 (1977).
For example, if the compound is anionic, or has a functional group
which may be anionic (e.g., -COOH may be -COO"), then a salt may be
formed with a suitable cation. Examples of suitable inorganic cations
include, but are not limited to, alkali metal ions such as Na* and K+,
alkaline earth cations such as Ca2+ and Mg2+, and other cations such as
A13+. Examples of suitable organic cations include, but are not
limited to, ammonium ion (i.e., NH4
+) and substituted ammonium ions
(e.g., NH3R+, NH2R2
+, NHR3
+, NR4
+) . Examples of some suitable substitut4d
ammonium ions are those derived from: ethylamine, diethylamine,
dicyclohexylamine, triethylamine, butylamine, ethylenediamine,
ethanolamine, diethanolamine, piperazine, benzylamine,
phenylbenzylamine, choline, meglumine, and tromethamine, as well as
amino acids, such as lysine and arginine. An example of a common
quaternary ammonium ion is N(CH3)4
+
If the compound is cationic, or has a functional group which may be
cationic (e.g., -NH2 may be -NH3
+) , then a salt may be formed with a
suitable anion. Examples of suitable inorganic anions include, but
are not limited to, those derived from the following inorganic acids:
hydrochloric, hydrobromic, hydroiodic, sulfuric, sulfurous, nitric,
nitrous, phosphoric, and phosphorous. Examples of suitable organic
anions include, but are not limited to, those derived from the
following organic acids: acetic, propionic, succinic, gycolic,
stearic, palmitic, lactic, malic, pamoic, tartaric, citric, gluconic,
ascorbic, maleic, hydroxymaleic, phenylacetic, glutamic, aspartic,
benzoic, cinnamic, pyruvic, salicyclic, sulfanilic, 2-acetyoxybenzoic
fumaric, toluenesulfonic, methanesulfonic, ethanesulfonic, ethane
disulfonic, oxalic, isethionic, valeric, and gluconic. Examples of
suitable polymeric anions include, but are not limited to, those
derived from the following polymeric acids: tannic acid, carboxymethy!.
cellulose.
It may be convenient or desirable to prepare, purify, and/or handle a
corresponding solvate of the active compound. The term "solvate" is
used herein in the conventional sense to refer to a complex of solute
(e.g. active compound, salt of active compound) and solvent. If the
solvent is water, the solvate may be conveniently referred to as a
hydrate, for example, a mono-hydrate, a di-hydrate, a tri-hydrate,
etc.
It may be convenient or desirable to prepare, purify, and/or handle
the active compound in a chemically protected form. The term
"chemically protected form," as used herein, pertains to a compound in
which one or more reactive functional groups are protected from
undesirable chemical reactions, that is, are in the form of a
protected or protecting group (also known as a masked or masking group
or a blocked or blocking group). By protecting a reactive functional
group, reactions involving other unprotected reactive functional
groups can be performed, without affecting the protected group; the
protecting group may be removed, usually in a subsequent step, without,
substantially affecting the remainder of the molecule. See, for
example, "Protective Groups in Organic Synthesis" (T. Green and
P. Wuts; 3rd Edition; John Wiley and Sons, 1999).
For example, a hydroxy group may be protected as an ether (-OR) or an
ester (-OC(=0)R), for example, as: a t-butyl ether; a benzyl,
benzhydryl (diphenylmethyl), or trityl (triphenylmethyl) ether; a
trimethylsilyl or t-butyldimethylsilyl ether; or an acetyl ester
(-OC(=0)CH3, -OAc).
For example, an aldehyde or ketone group may be protected as an aceta^
or ketal, respectively, in which the carbonyl group (>C=0) is
converted to a diether (>C(OR)2), by reaction with, for example, a
primary alcohol. The aldehyde or ketone group is readily regenerated
by hydrolysis using a large excess of water in the presence of acid.
For example, an amine group may be protected, for example, as an amide
or a urethane, for example, as: a methyl amide (-NHCO-CH3) ; a benzyloxy
amide (-NHCO-OCH2C6HS, -NH-Cbz); as a t-butoxy amide (-NHCO-OC(CH3) 3,
-NH-Boc); a 2-biphenyl-2-propoxy amide (-NHCO-OC(CH3) 2C6H4C6H5, -NHBpoc),
as a 9-fluorenylmethoxy amide (-NH-Fmoc), as a 6-
nitroveratryloxy amide (-NH-Nvoc), as a 2-trimethylsilylethyloxy amide:
(-NH-Teoc), as a 2,2,2-trichloroethyloxy amide (-NH-Troc), as an
allyloxy amide (-NH-Alloc), as a 2(-phenylsulphonyl)ethyloxy amide (-
NH-Psec); or, in suitable cases, as an W-oxide (>NO«).
For example, a carboxylic acid group may be protected as an ester for
example, as: an C^, alkyl ester (e.g. a methyl ester; a t-butyl ester)
a Ci_7 haloalkyl ester (e.g. a C^ trihaloalkyl ester); a triC^,
alkylsilyl-Ci.v alkyl ester,- or a C5.2o aryl-C^, alkyl ester (e.g. a
benzyl ester; a nitrobenzyl ester); or as an amide, for example, as a
methyl amide.
For example, a thiol group may be protected as a thioether (-SR), for
example, as: a benzyl thioether; an acetamidomethyl ether (-SCH2NHC(=
0)CH3) .
It may be convenient or desirable to prepare, purify, and/or handle
the active compound in the form of a prodrug. The term "prodrug", as
used herein, pertains to a compound which, when metabolised (e.g. in
vivo), yields the desired active compound. Typically, the prodrug is
inactive, or less active than the active compound, but may provide
advantageous handling, administration, or metabolic properties.
For example, some prodrugs are esters of the active compound (e.g. a
physiologically acceptable metabolically labile ester). During
metabolism, the ester group (-C(=0)OR) is cleaved to yield the active
drug. Such esters may be formed by esterification, for example, of
any of the carboxylic acid groups (-C(=0)OH) in the parent compound,
with, where appropriate, prior protection of any other reactive group^
present in the parent compound, followed by deprotection if required.
Examples of such metabolically labile esters include those wherein R
is Ci-zo alkyl (e.g. -Me, -Et) ; C^, aminoalkyl (e.g. aminoethyl; 2-(N,Ndiethylamino)
ethyl; 2-(4-morpholino) ethyl) ,- and acyloxy-CV, alkyl (e.g
acyloxymethyl; acyloxyethyl; e.g. pivaloyloxymethyl; acetoxymethyl;
1-acetoxyethyl; 1-(1-methoxy-l-methyl)ethyl-carbonxyloxyethyl; 1-
(benzoyloxy)ethyl; isopropoxy-carbonyloxymethyl; 1-isopropoxycarbonyloxyethyl;
cyclohexyl-carbonyloxymethyl; 1-cyclohexylcarbonyloxyethyl;
cyclohexyloxy-carbonyloxymethyl; 1-cyclohexyloxycarbonyloxyethyl;
(4-tetrahydropyranyloxy) carbonyloxymethyl; l-(4-
tetrahydropyranyloxy)carbonyloxyethyl;
(4-tetrahydropyranyl) carbonyloxymethyl,- and
1-(4 -tetrahydropyranyl)carbonyloxyethyl).
Further suitable prodrug forms include phosphonate and glycolate
salts. In particular, hydroxy groups (-OH), can be made into
phosphonate prodrugs by reaction with chlorodibenzylphosphite,
followed by hydrogenation, to form a phosphonate group -0-P(=0)(OH)2.
Such a group can be cleared by phosphotase enzymes during metabolism
to yield the active drug with the hydroxy group.
Also, some prodrugs are activated enzymatically to yield the active
compound, or a compound which, upon further chemical reaction, yields
the active compound. For example, the prodrug may be a sugar
derivative or other glycoside conjugate, or may be an amino acid ester
derivative.

Acronyms
For convenience, many chemical moieties are represented using well
known abbreviations, including but not limited to, methyl (Me), ethyl
(Et), n-propyl (nPr), iso-propyl (iPr) , n-butyl (nBu), tert-butyl
(tBu), n-hexyl (nHex), cyclohexyl (cHex) , phenyl (Ph), biphenyl
(biPh), benzyl (Bn), naphthyl (naph), methoxy (MeO), ethoxy (EtO),
benzoyl (Bz), and acetyl (Ac).
For convenience, many chemical compounds are represented using well
known abbreviations, including but not limited to, methanol (MeOH),
ethanol (EtOH) , iso-propanol (i-PrOH), methyl ethyl ketone (MEK),
ether or diethyl ether (EtsO) , acetic acid (AcOH), dichloromethane
(methylene chloride, DGM), trifluoroacetic acid (TFA),
dimethylformamide (DMF), tetrahydrofuran (THF), and dimethylsulfoxide
(DMSO).
Synthesis
In the synthesis routes given below, the A-B fused ring is shown as a
fused benzene ring for convenience. Compounds in which the A-B ring
is other than benzene may be synthesised using methodologies analogous^
to those described below by the use of appropriate alternative
starting materials.
Compounds of the present invention may be synthesised by reaction of a
compound of Formula 1:
(Figure Removed)

in which R1 is as previously defined, with a compound of Formula 2:
(Figure Removed)

in which n, RC1, RC2 and X are as previously defined, in the presence of
a coupling reagent system, for example 2-(IH-benzotriazol-l-yl)-
1,1,3,3-tetramethyluronium tetrafluoroborate, 2-(IH-benzotriazol-lyl)-
1,1,3,3-tetramethyluronium hexafluorophosphate or
(dimethylaminopropyl)ethylcarbodiimide
hydrochloride/hydroxybenzotriazole, in the presence of a base, for
example diisopropylethylamine, in a solvent, for example
dimethylacetamide or dichloromethane, at a temperature in the range
0°C to the boiling point of the solvent used.
Alternatively, compounds of the present invention may be synthesised
by conversion of a compound of Formula 1 into an activated species,
for example an acid chloride or an activated ester such as an Nhydroxysuccinimide
ester, using well-known methodologies, and reaction
of the activated species with a compound of Formula 2.
Compounds of Formula 1 may be synthesised by reaction of a compound o:i
Formula 3:
in which R1 is as previously defined, or a compound of Formula 4:
in which R1 is as previously defined, or a mixture of a compound of
Formula 3 and a compound of Formula 4, with a source of hydrazine, foi
example hydrazine hydrate, optionally in the presence of a base, for
example triethylamine, optionally in the presence of a solvent, for
example industrial methylated spirit, at a temperature in the range oi
0°C to the boiling point of the solvent used.
Compounds of Formula 3 or Formula 4, or mixtures thereof, may be
synthesised by reaction of a compound of Formula 5:
in which R1 is as previously defined, with a reagent capable of
hydrolysing a nitrile moiety, for example sodium hydroxide, in the
presence of a solvent, for example water, at a temperature in the
range of 0°C to the boiling point of the solvent used.
Compounds of Formula 5 may be synthesised by reaction of a compound ol:
Formula 6:
in which R1 is as previously defined, with a compound of Formula 7:
in the presence of a base, for example sodium methoxide, in a solvent
for example methanol, optionally in the presence of a water scavenger
for example ethyl propionate, at a temperature in the range of 0°C to
the boiling point of the solvent used.
Compounds of Formula 1 may also be synthesised by reaction of a
compound of Formula 8:

in which R1 is as previously defined, with a reagent capable of
hydrolysing a nitrile moiety, for example sodium hydroxide, in the
presence of a solvent, for example water, at a temperature in the
range of 0°C to the boiling point of the solvent used, followed by
reaction of the resulting intermediate with a source of hydrazine, fo
example hydrazine hydrate, at a temperature in the range of 0°C to
boiling point of the solvent used.
Compounds of Formula 8 may be synthesised by reaction of a compound o
Formula 9:
in which Ra is a C^ alkyl group, with a compound of Formula 6, in the
presence of a base, for example triethylamine or lithium
hexamethyldisilazide, in the presence of a solvent, for example
tetrahydrofuran, at a temperature in the range of -80°C to the boilincpoint
of the solvent used.
Compounds of Formula 9 may be synthesised by methods analogous to
those described in WO 02/26576.
Compounds of Formula 1 may also be synthesised by methods analogous to
those described above in which the nitrile moiety in all Formulae is
replaced by other moieties capable of generating a carboxylic acid,
for example ester or carboxamide moieties.
Compounds of Formula 2 are commercially available or may be
synthesised by methods reported in the chemical literature.
Compounds of the present invention in which X is CRXRY, in which one o
Rx or Ry is an amido moiety, and which may therefore be represented by
Formula 10:
(Figure Removed)
in which n, RC1, RC2, R1 and Rx are as previously defined and RN1 and RN2
are each individually selected from the group consisting of H,
optionally substituted Ci_2o alkyl, C5.20 aryl, C3.20 heterocyclyl, or may
together form an optionally substituted C3.7 cycloalkyl or heterocyclyl
group, may be synthesised by reaction of a compound of Formula 11:
(Figure Removed)
in which n, RC1, RC2, R1 and Rx are as previously defined, with a
compound of Formula HNRNIRN2, in which RN! and RN2 are as previously
defined, in the presence of a coupling reagent system, for example 2-
(IH-benzotriazol-l-yl) -1,1,3, 3-tetramethyluronium tetraf luoroborate,
2- (IH-benzotriazol-l-yl) -1,1,3, 3-tetramethyluronium
hexaf luorophosphate or (dimethylaminopropyl) ethylcarbodiimide
hydrochloride/ hydroxybenzotriazole, in the presence of a base, for
example diisopropylethylamine, in a solvent, for example
dimethylacetamide or dichloromethane, at a temperature in the range oJ
0°C to the boiling point of the solvent used.
Alternatively, compounds of Formula 10 may be synthesised by
conversion of a compound of Formula 11 into an activated species, for
example an acid chloride or an activated ester such as an Nhydroxysuccinimide
ester, using well-known methodologies, and reactioi
of the activated species with a compound of Formula HNRN1RN2 .
Compounds of Formula 11 may be synthesised by deprotection of a
protected form of a compound of Formula 11, for example a compound of
Formula 12 :
(Figure Removed)

R1 and Rx are as previously defined and R01 is a C
4 alkyl group, using well known methodologies, for example basecatalysed
hydrolysis in the presence of a source of hydroxide, for
example sodium or lithium hydroxide, in the presence of a solvent, fo:
example water and/or tetrahydrofuran, at a temperature in the range o:
0°C to the boiling point of the solvent used.
Compounds of Formula 12 may be synthesised from compounds of Formula :
by the previously described methods.
Compounds of Formula HNRN1RN2 are commercially available or may be
synthesised by methods reported in the chemical literature.
Compounds of the present invention in which X is NH and which may
therefore be represented by Formula 13:
(Figure Removed)

in which n, RC1, Rc2 and R1 are as previously defined, may be
synthesised by deprotection of a protected form of a compound of
Formula 13, for example a compound of Formula 14:
(Figure Removed)

in which n, RC1, RC2 and R1 are as previously defined, using well known
methodologies, for example acid-catalysed cleavage, in the presence oi:
an acid, for example trifluoroacetic acid or hydrochloric acid, in the;
presence of a solvent, for example dichloromethane or ethanol and/or
water, at a temperature in the range of 0°C to the boiling point of thje
solvent used.
Compounds of Formula 14 may be synthesised from compounds of Formula :.
by the previously described methods.
Compounds of the present invention in which X is NRX, in which Rx is a:i
acyl moiety, and which may therefore be represented by Formula 15:
(Figure Removed)

Formula 15
in which n, RC1, RC2 and R1 are as previously defined and RC3 is selected
from the group consisting of optionally substituted Ci-20 alkyl, C5_2o
aryl and C3_20 heterocyclyl, may be synthesised by reaction of a
compound of Formula 13 with a compound of Formula RC3COX, in which RC3
is as previously defined and X is a suitable leaving group, for
example a halogen such as chloro, optionally in the presence of a
base, for example pyridine, triethylamine or diisopropylethylamine,
optionally in the presence of a solvent, for example dichloromethane,
at a temperature in the range of 0°C to the boiling point of the
solvent used.
Compounds of Formula RC3COX are commercially available or may be
synthesised by methods reported in the chemical literature.
Compounds of Formula 15 may also be synthesised by reaction of a
compound of Formula 13 with a compound of Formula RC3CO2H, in which RC3
is as previously defined, in the presence of a coupling reagent
system, for example 2-(IH-benzotriazol-l-yl)-1,1,3,3-
tetramethyluronium tetrafluoroborate, 2-(IH-benzotriazol-l-yl)-
1,1,3,3-tetramethyluronium hexafluorophosphate or
(dimethylaminopropyl)ethylcarbodiimide hydrochloride/
hydroxybenzotriazole, in the presence of a base, for example
diisopropylethylamine, in a solvent, for example dimethylacetamide or
dichloromethane, at a temperature in the range of 0°C to the boiling
point of the solvent used.
Compounds of Formula RC3C02H are commercially available or may be
synthesised by methods reported in the chemical literature.
Compounds of the present invention in which X is NRX, in which Rx is a
amido or thioamido moiety, and which may therefore be represented by
Formula 16:
(Figure Removed)

in which n, Rcl, RC2 and R1 are as previously defined, Y is 0 or S and
RN3 is selected from the group consisting of optionally substituted C^
alkyl, Cs-20 aryl and C3.20 heterocyclyl, may be synthesised by reaction
of a compound of Formula 13 with a compound of Formula RN3NCY, in whicfi
Y and RN3 are as previously defined, in the presence of a solvent, for
example dichloromethane, at a temperature in the range of 0°C to the
boiling point of the solvent used.
Compounds of Formula RN3NCY are commercially available or may be
synthesised by methods reported in the chemical literature.
Compounds of the present invention in which X is NRX, in which Rx is a
sulfonyl moiety, and which may therefore be represented by Formula 17
Formula 17
in which n, Rc and R1 are as previously defined and RS1 is selected
from the group consisting of optionally substituted Ci-20 alkyl, C5_20
aryl and C3.20 heterocyclyl, may be synthesised by reaction of a
compound of Formula 13 with a compound of Formula RS1S02C1, in which F
is as previously defined, optionally in the presence of a base, for
example pyridine, triethylamine or diisopropylethylamine, in the
presence of a solvent, for example dichloromethane, at a temperature
in the range of 0°C to the boiling point of the solvent used.
Compounds of Formula RS1S02C1 are commercially available or may be
synthesised by methods reported in the chemical literature.
Compounds of the present invention in which X is NRX, in which Rx is
selected from the group consisting of optionally substituted Cj_20 alkyjl
or C3_2o heterocyclyl, and which may therefore be represented by Formula
18:
(Figure Removed)

in which n, Rcl, RC2 and R1 are as previously defined and RC4 and R05 are
each individually selected from the group consisting of H, optionally
substituted C^o alkyl, C5.20 aryl, C3.2o heterocyclyl, or may together
form an optionally substituted C3.7 cycloalkyl or heterocyclyl group,
may be synthesised by reaction of a compound of Formula 13 with a
compound of Formula RC4CORC5, in which RC4 and RC5 are as previously
defined, in the presence of a reducing agent, for example sodium
cyanoborohydride or sodium triacetoxyborohydride, in the presence of £
solvent, for example methanol, optionally in the presence of an acid
catalyst, for example acetic acid, at a temperature in the range of Oc
to the boiling point of the solvent used.
Compounds of Formula RC4CORC5 are commercially available or may be
synthesised by methods reported in the chemical literature.
Use
The present invention provides active compounds, specifically, active
in inhibiting the activity of PARP.
The term "active" as used herein, pertains to compounds which are
capable of inhibiting PARP activity, and specifically includes both
compounds with intrinsic activity (drugs) as well as prodrugs of such
compounds, which prodrugs may themselves exhibit little or no
intrinsic activity.
One assay which may conveniently be used in order to assess the PARP
inhibition offered by a particular compound is described in the
examples below.
The present invention further provides a method of inhibiting the
activity of PARP in a cell, comprising contacting said cell with an
effective amount of an active compound, preferably in the form of a
pharmaceutically acceptable composition. Such a method may be
practised in vitro or in vivo.
For example, a sample of cells may be grown in vitro and an active
compound brought into contact with said cells, and the effect of the
compound on those cells observed. As examples of "effect", the amount
of DNA repair effected in a certain time may be determined. Where th«
active compound is found to exert an influence on the cells, this may
be used as a prognostic or diagnostic marker of the efficacy of the
compound in methods of treating a patient carrying cells of the same
cellular type.
The term "treatment", as used herein in the context of treating a
condition, pertains generally to treatment and therapy, whether of a
human or an animal (e.g. in veterinary applications), in which some
desired therapeutic effect is achieved, for example, the inhibition oi
the progress of the condition, and includes a reduction in the rate oi
progress, a halt in the rate of progress, amelioration of the
condition, and cure of the condition. Treatment as a prophylactic
measure (i.e. prophylaxis) is also included.
The term "adjunct" as used herein relates to the use of active
compounds in conjunction with known therapeutic means. Such means
include cytotoxic regimes of drugs and/or ionising radiatron as used
in the treatment of different cancer types. In particular, the active
compounds are known to potentiate the actions of a number of cancer
chemotherapy treatments, which include the topoisomerase class of
poisons (e.g. topotecan, irinotecan, rubitecan), most of the known
alkylating agents (e.g. DTIC, temozolamide) and platinum based drugs
(e.g. carboplatin, cisplatin) used in treating cancer.
Active compounds may also be used as cell culture additives to inhibit
PARP, for example, in order to sensitize cells to known
chemotherapeutic agents or ionising radiation treatments in vitro.
Active compounds may also be used as part of an in vitro assay, for
example, in order to determine whether a candidate host is likely to
benefit from treatment with the compound in question.
Administration
The active compound or pharmaceutical composition comprising the
active compound may be administered to a subject by any convenient
route of administration, whether systemically/ peripherally or at the
site of desired action, including but not limited to, oral (e.g. by
ingestion) ,- topical (including e.g. transdermal, intranasal, ocular,
buccal, and sublingual); pulmonary (e.g. by inhalation or insufflatioi
therapy using, e.g. an aerosol, e.g. through mouth or nose); rectal;
vaginal; parenteral, for example, by injection, including
subcutaneous, intradermal, intramuscular, intravenous, intraarterial,
intracardiac, intrathecal, intraspinal, intracapsular, subcapsular,
intraorbital, intraperitoneal, intratracheal, subcuticular,
intraarticular, subarachnoid, and intrasternal; by implant of a depot
for example, subcutaneously or intramuscularly.
The subject may be a eukaryote, an animal, a vertebrate animal, a
mammal, a rodent (e.g. a guinea pig, a hamster, a rat, a mouse),
murine (e.g. a mouse), canine (e.g. a dog), feline (e.g. a cat),
equine (e.g. a horse), a primate, simian (e.g. a monkey or ape), a
monkey (e.g. marmoset, baboon), an ape (e.g. gorilla, chimpanzee,
orangutang, gibbon), or a human.
Formulations
While it is possible for the active compound to be administered alone
it is preferable to present it as a pharmaceutical composition (e.g.,
formulation) comprising at least one active compound, as defined
above, together with one or more pharmaceutically acceptable carriers
adjuvants, excipients, diluents, fillers, buffers, stabilisers,
preservatives, lubricants, or other materials well known to those
skilled in the art and optionally other therapeutic or prophylactic
agents.
Thus, the present invention further provides pharmaceutical
compositions, as defined above, and methods of making a pharmaceutica
composition comprising admixing at least one active compound, as
defined above, together with one or more pharmaceutically acceptable
carriers, excipients, buffers, adjuvants, stabilisers, or other
materials, as described herein.
The term "pharmaceutically acceptable" as used herein pertains to
compounds, materials, compositions, and/or dosage forms which are,
within the scope of sound medical judgement, suitable for use in
contact with the tissues of a subject (e.g. human) without excessive
toxicity, irritation, allergic response, or other problem or
complication, commensurate with a reasonable benefit/risk ratio. Eac
carrier, excipient, etc. must also be "acceptable" in the sense of
being compatible with the other ingredients of the formulation.
Suitable carriers, diluents, excipients, etc. can be found in standar
pharmaceutical texts. See, for example, "Handbook of Pharmaceutical
Additives", 2nd Edition (eds. M. Ash and I. Ash), 2001 (Synapse
Information Resources, Inc., Endicott, New York, USA), "Remington's
Pharmaceutical Sciences", 20th edition, pub. Lippincott, Williams &
Wilkins, 2000; and "Handbook of Pharmaceutical Excipients", 2nd
edition, 1994.
The formulations may conveniently be presented in unit dosage form an
may be prepared by any methods well known in the art of pharmacy.
Such methods include the step of bringing into association the active
compound with the carrier which constitutes one or more accessory
ingredients. In general, the formulations are prepared by uniformly
and intimately bringing into association the active compound with
liquid carriers or finely divided solid carriers or both, and then if
necessary shaping the product.
Formulations may be in the form of liquids, solutions, suspensions,
emulsions, elixirs, syrups, tablets, losenges, granules, powders,
capsules, cachets, pills, ampoules, suppositories, pessaries,
ointments, gels, pastes, creams, sprays, mists, foams, lotions, oils,
boluses, electuaries, or aerosols.
Formulations suitable for oral administration (e.g., by ingestion) ma
be presented as discrete units such as capsules, cachets or tablets,
each containing a predetermined amount of the active compound; as a
powder or granules; as a solution or suspension in an aqueous or nonaqueous
liquid; or as an oil-in-water liquid emulsion or a water-inoil
liquid emulsion; as a bolus; as an electuary; or as a paste.
A tablet may be made by conventional means, e.g. compression or
molding, optionally with one or more accessory ingredients.
Compressed tablets may be prepared by compressing in a suitable
machine the active compound in a free-flowing form such as a powder o
granules, optionally mixed with one or more binders (e.g. povidone,
gelatin, acacia, sorbitol, tragacanth, hydroxypropylmethyl cellulose)
fillers or diluents (e.g. lactose, microcrystalline cellulose, calciui
hydrogen phosphate); lubricants (e.g. magnesium stearate, talc,
silica); disintegrants (e.g. sodium starch glycolate, cross-linked
povidone, cross-linked sodium carboxymethyl cellulose); surface-activi
or dispersing or wetting agents (e.g., sodium lauryl sulfate); and
preservatives (e.g., methyl p-hydroxybenzoate, propyl phydroxybenzoate,
sorbic acid). Molded tablets may be made by molding
in a suitable machine a mixture of the powdered compound moistened
with an inert liquid diluent. The tablets may optionally be coated o
scored and may be formulated so as to provide slow or controlled
release of the active compound therein using, for example,
hydroxypropylmethyl cellulose in varying proportions to provide the
desired release profile. Tablets may optionally be provided with an
enteric coating, to provide release in parts of the gut other than th
stomach.
Formulations suitable for topical administration (e.g. transdermal,
intranasal, ocular, buccal, and sublingual) may be formulated as an
ointment, cream, suspension, lotion, powder, solution, past, gel,
spray, aerosol, or oil. Alternatively, a formulation may comprise a
patch or a dressing such as a bandage or adhesive plaster impregnated
with active compounds and optionally one or more excipients or
diluents.
Formulations suitable for topical administration in the mouth include
losenges comprising the active compound in a flavored basis, usually
sucrose and acacia or tragacanth; pastilles comprising the active
compound in an inert basis such as gelatin and glycerin, or sucrose
and acacia; and mouthwashes comprising the active compound in a
suitable liquid carrier.
Formulations suitable for topical administration to the eye also
include eye drops wherein the active compound is dissolved or
suspended in a suitable carrier, especially an aqueous solvent for th
active compound.
Formulations suitable for nasal administration, wherein the carrier i
a solid, include a coarse powder having a particle size, for example,
in the range of about 20 to about 500 microns which is administered i
the manner in which snuff is taken, i.e. by rapid inhalation through
the nasal passage from a container of the powder held close up to the
nose. Suitable formulations wherein the carrier is a liquid for
administration as, for example, nasal spray, nasal drops, or by
aerosol administration by nebuliser, include aqueous or oily solution
of the active compound.
Formulations suitable for administration by inhalation include those
presented as an aerosol spray from a pressurised pack, with the use oE
a suitable propellant, such as dichlorodifluoromethane,
trichlorofluoromethane, dichoro-tetrafluoroethane, carbon dioxide, or
other suitable gases.
Formulations suitable for topical administration via the skin include
ointments, creams, and emulsions. When formulated in an ointment, th active compound may optionally be employed with either a paraffinic or
a water-miscible ointment base. Alternatively, the active compounds
may be formulated in a cream with an oil-in-water cream base. If
desired, the aqueous phase of the cream base may include, for example
at least about 30% w/w of a polyhydric alcohol, i.e., an alcohol
having two or more hydroxyl groups such as propylene glycol, butane-
1,3-diol, mannitol, sorbitol, glycerol and polyethylene glycol and
mixtures thereof. The topical formulations may desirably include a
compound which enhances absorption or penetration of the active
compound through the skin or other affected areas. Examples of such
dermal penetration enhancers include dimethylsulfoxide and related
analogues.
When formulated as a topical emulsion, the oily phase may optionally
comprise merely an emulsifier (otherwise known as an emulgent), or it
may comprises a mixture of at least one emulsifier with a fat or an
oil or with both a fat and an oil. Preferably, a hydrophilic
emulsifier is included together with a lipophilic emulsifier which
acts as a stabiliser. It is also preferred to include both an oil and
a fat. Together, the emulsifier(s) with or without stabiliser(s) make
up the so-called emulsifying wax, and the wax together with the oil
and/or fat make up the so-called emulsifying ointment base which form^
the oily dispersed phase of the cream formulations.
Suitable emulgents and emulsion stabilisers include Tween 60, Span 80
cetostearyl alcohol, myristyl alcohol, glyceryl monostearate and
sodium lauryl sulphate. The choice of suitable oils or fats for the
formulation is based on achieving the desired cosmetic properties,
since the solubility of the active compound in most oils likely to be
used in pharmaceutical emulsion formulations may be very low. Thus
the cream should preferably be a non-greasy, non-staining and washabli
product with suitable consistency to avoid leakage from tubes or other
containers. Straight or branched chain, mono- or dibasic alkyl esterii
such as di-isoadipate, isocetyl stearate, propylene glycol diester o:
coconut fatty acids, isopropyl myristate, decyl oleate, isopropyl
palmitate, butyl stearate, 2-ethylhexyl palmitate or a blend of
branched chain esters known as Crodamol CAP may be used, the last
three being preferred esters. These may be used alone or in
combination depending on the properties required. Alternatively, hich
melting point lipids such as white soft paraffin and/or liquid
paraffin or other mineral oils can be used.
Formulations suitable for rectal administration may be presented as a
suppository with a suitable base comprising, for example, cocoa butte
or a salicylate.
Formulations suitable for vaginal administration may be presented as
pessaries, tampons, creams, gels, pastes, foams or spray formulations
containing in addition to the active compound, such carriers as are
known in the art to be appropriate.
Formulations suitable for parenteral administration (e.g., by
injection, including cutaneous, subcutaneous, intramuscular,
intravenous and intradermal), include aqueous and non-aqueous
isotonic, pyrogen-free, sterile injection solutions which may contain
anti-oxidants, buffers, preservatives, stabilisers, bacteriostats, an
solutes which render the formulation isotonic with the blood of the
intended recipient; and aqueous and non-aqueous sterile suspensions
which may include suspending agents and thickening agents, and
liposomes or other microparticulate systems which are designed to
target the compound to blood components or one or more organs.
Examples of suitable isotonic vehicles for use in such formulations
include Sodium Chloride Injection, Ringer=s Solution, or Lactated
Ringer=s Injection. Typically, the concentration of the active
compound in the solution is from about I ng/ml to about 10 (jg/ml, for
example from about 10 ng/ml to about 1 j^g/ml. The formulations may b
presented in unit-dose or multi-dose sealed containers, for example,
ampoules and vials, and may be stored in a freeze-dried (lyophilised)
condition requiring only the addition of the sterile liquid carrier,
for example water for injections, immediately prior to use.
Extemporaneous injection solutions and suspensions may be prepared
from sterile powders, granules, and tablets. Formulations may be ir
the form of liposomes or other microparticulate systems which are
designed to target the active compound to blood components or one or
more organs.
Dosage
It will be appreciated that appropriate dosages of the active
compounds, and compositions comprising the active compounds, can vary
from patient to patient. Determining the optimal dosage will
generally involve the balancing of the level of therapeutic benefit
against any risk or deleterious side effects of the treatments of the
present invention. The selected dosage level will depend on a variet;
of factors including, but not limited to, the activity of the
particular compound, the route of administration, the time of
administration, the rate of excretion of the compound, the duration o::
the treatment, other drugs, compounds, and/or materials used in
combination, and the age, sex, weight, condition, general health, and
prior medical history of the patient. The amount of compound and
route of administration will ultimately be at the discretion of the
physician, although generally the dosage will be to achieve local
concentrations at the site of action which achieve the desired effect
without causing substantial harmful or deleterious side-effects.
Administration in vivo can be effected in one dose, continuously or
intermittently (e.g., in divided doses at appropriate intervals)
throughout the course of treatment. Methods of determining the most
effective means and dosage of administration are well known to those
of skill in the art and will vary with the formulation used for
therapy, the purpose of the therapy, the target cell being treated,
and the subject being treated. Single or multiple administrations can
be carried out with the dose level and pattern being selected by the
treating physician.
In general, a suitable dose of the active compound is in the range of
about 100 jag to about 250 mg per kilogram body weight of the subject
per day. Where the active compound is a salt, an ester, prodrug, or
the like, the amount administered is calculated on the basis of the
parent compound and so the actual weight to be used is increased
proportionately.
Synthesis Data
General Experimental Methods
Preparative HPLC
Samples were purified with a Waters mass-directed purification system
utilising a Waters 600 LC pump, Waters Xterra CIS column (5 ^im 19 mm
50 mm) and Micromass ZQ mass spectrometer, operating in positive ion
electrospray ionisation mode. Mobile phases A (0.1% formic acid in
water) and B (0.1 % formic acid in acetonitrile) were used in a
gradient; 5% B to 100% over 7 min, held for 3 min, at a flow rate of
20 ml/ min.
Analytical HPLC-MS
Analytical HPLC was carried out with a Spectra System P4000 pump and
Jones Genesis C18 column (4 /im, 50 mm x 4.6 mm) . Mobile phases A (0.1
% formic acid in water) and B (acetonitrile) were used in a gradient
of 5 % B for 1 min rising to 98 % B after 5 min, held for 3 min at a
flow rate of 2 ml / min. Detection was by a TSP UV 6000LP detector at
254 nm UV and range 210-600 nm PDA. The Mass spectrometer was a
Finnigan LCQ operating in positive ion electrospray mode.
NMR
1H NMR and 13C NMR were recorded using Bruker DPX 300 spectrometer at
300 MHz and 75 MHz respectively. Chemical shifts were reported in
parts per million (ppm) on the 5 scale relative to tetramethylsilane
internal standard. Unless stated otherwise all samples were dissolved
in DMSO-d6.
Synthesis of Key Intermediates
a. 3-(4-Oxo-3,4-dihydrophthalazin-l-ylmethyl)benzoic acid (A)
A mixture of 27% sodium methoxide solution in methanol (400 g, 2 mol)
and methanol (150 ml) was added dropwise between ambient temperature
and 30°C over 15 minutes to a stirred mixture of phthalide (67 g, 0.5
mol), 3-formylbenzonitrile (65.5 g, 0.5 mol) and ethyl propionate (256
ml), the mixture was stirred at ambient temperature for 40 minutes and
at reflux temperature for 1 hour, then it was allowed to cool to
ambient temperature. The resulting red solid was collected by
filtration, washed with ethyl acetate (2 x 50 ml) and dissolved in
water (1800 ml). The solution was acidified by the addition of acetic
acid (60 ml) and the resulting red solid was collected by filtration,
washed with water (2 x 200 ml) and dried in vacuo to give 3-(1,3-
dioxoindan-2-yl)benzonitrile (83.2 g) as a dark red solid, m.pt. 179-
182°C, m/z (M+H)+P 248, which was used without further purification.
3-(1,3-Dioxoindan-2-yl)benzonitrile (74.18 g, 0.3 mol) was added in
portions to a solution of sodium hydroxide (36 g, 0.9 mol) in water
(580 ml), the resulting dark red suspension was stirred at reflux
temperature for 5 hours, then it was cooled to ambient temperature and
washed with ethyl acetate (3 x 300 ml). The aqueous solution was
acidified by the dropwise addition of concentrated hydrochloric acid
(110 ml), the mixture was stirred at ambient temperature for 1 hour,
then the resulting solid was collected by filtration, washed with
water (2 x 200 ml) and dried in vacuo to give a 1:1 mixture of 3-(1,3-
dioxoindan-2-yl)benzoic acid, (M+H)+1 267, and 2-[2-(3-
carboxyphenyl)acetyl]benzole acid, (M+H)+- 285, (69.32 g) , which was
used without further purification.
The mixture obtained in the previous step (52.8 g) was added to a
solution of triethylamine (37.55 g, 0.372 mol) in industrial
methylated spirit (500 ml) and the resulting cloudy solution was
filtered through a pad of filter-aid to give a clear solution.
Hydrazine monohydrate (9.3 g, 0.186 mol) was added in one portion at
ambient temperature, the stirred mixture was heated under reflux for
hour, then it was concentrated in vacuo to approximately 250 ml and
added to a solution of sodium acetate (41 g, 0.5 mol) in water (500
ml). The mixture was brought to pH 7 by the dropwise addition of
concentrated hydrochloric acid, then it was stirred at ambient
temperature for 3 hours. The resulting solid was collected by
filtration, washed with water (50 ml) and dried in vacuo to give a
white solid (15.62 g). The combined filtrate and washings were
acidified to pH 6 by the addition of hydrochloric acid, then the
mixture was stirred at ambient temperature for 3 hours. The resulting
solid was collected by filtration, washed with water (50 ml) and dried
in vacuo to give a second crop of off-white solid (17.57 g). The
combined filtrate and washings from the second crop were readjusted t
pH 6 and treated as before to give a third crop of pale orange solid
(6.66 g). The three crops were combined to give essentially pure 3-
(4-oxo-3,4-dihydrophthalazin-1-ylmethyl)benzole acid (A), (M+H)+- 281,
6H 4.4 (2H, s), 7.2-7.4 (1H, m), 7.5-7.6 (1H, m), 7.7-8.0 (5H, m), 8.]
8.2 (1H, m), 12.6 (1H, s)
b. 2-Fluoro-5-(4-oxo-3,4-dihydro-phthalazin-l-ylmethyl)benzole acid
(B)
Q
Dimethyl phosphite (22.0 g, 0.2 mol) was added drop-wise to a solutiop
of sodium methoxide (43.0 g) in methanol (100 ml) at 0°C. 2-
Carboxybenzaldehyde (21.0 g, 0.1 mol) was then added portion-wise to
the reaction mixture as a slurry in methanol (40 ml), with the
temperature kept below 5°C. The resulting pale yellow solution was
warmed to 20°C over 1 hour. Methanesulphonic acid (21.2 g, 0.22 mol)
was added to the reaction drop-wise and the resulting white suspension
was evaporated in vacuo. The white residue was quenched with water and
extracted into chloroform (3 x 100 ml). The combined organic extracts
were washed with water (2 x 100 ml), dried over MgS04, and evaporated
in vacuo to yield (3-oxo-l,3-dihydro-isobenzofuran-l-yl)phosphonic
acid dimethyl ester as a white solid (32.0 g, 95 %, 95 % purity). Thi
was then used without further purification in the next stage.
To a mixture of (3-oxo-l,3-dihydro-isobenzofuran-l-yl)phosphonic acid
dimethyl ester (35.0 g, 0.14 mol) in tetrahydrofuran (200 ml) and 2-
fluoro-5-formylbenzonitrile (20.9 g, 0.14 mol) in tetrahydrofuran (13(j)
ml) was added triethylamine (14 ml, 0.14 mol) drop-wise over 25 min,
with the temperature kept below 15°C. The reaction mixture was warmed
slowly to 20°C over 1 hour and concentrated in vacuo. The white
residue was slurried in water (250 ml) for 30 minutes, filtered,
washed with water, hexane and ether, and dried to yield 2-fluoro-5-(3-
oxo-3H-isobenzofuran-l-ylidenemethyl)benzonitrile as a 50:50 mixture
of E and Z isomers (37.2 g, 96 %);
m/z [M+ir 266 (98 % purity)
To a suspension of 2-fluoro-5-(3-oxo-3H-isobenzofuran-lylidenemethyl)
benzonitrile in water (200 ml) was added aqueous sodium
hydroxide (26.1 g in 50 ml water) solution and the reaction mixture
was heated under nitrogen to 90°C for 30 minutes. The reaction mixturk
was partially cooled to 70°C, and hydrazine hydrate (100 ml) was added
and stirred for 18 hours at 70°C. The reaction was cooled to room
temperature and acidified with 2M HC1 to pH 4. The mixture was stirreji
for 10 min and filtered. The resulting solid was washed with water,
hexane, ether, ethyl acetate and dried to yield 2-fluoro-5-(4-oxo-3,4 -
dihydrophthalazin-1-ylmethyl)benzoic acid as a pale pink powder (30.0
g, 77 %) . m/z [M+l]+ 299 (96 % purity), 6H 4.4 (2H, s) , 7.2-7.3 (1H,
m), 7.5-7.6 (1H, m), 7.8-8.0 (4H, m), 8.2-8.3 (1H, m), 12.6 (1H, s).
c. 1-[3-(4-Oxo-3,4-dihydrophthalazin-l-ylmethyl)benzoyl]piperidine-4-
carboxylic acid (C)
(A) (C)
3-(4-0x0-3,4-dihydrophthalazin-1-ylmethyl)benzoic acid (A)(7.0 g, 0.2!i
mol), ethyl isonipecotate (5 ml, 0.32 mol), 2-(IH-benzotriazol-l-yl)-
1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU) (12.3 g, 0.32
mol) and N,N,-diisopropylethylamine (10.0 ml, 0.55 mol) were added to
dimethylacetamide (40 ml) and stirred for 18 h. Water (100 ml) was
added to the reaction mixture and the product was extracted into
dichloromethane (4 x 50 ml). The combined organic layers were washed
with water (3 x 100 ml) , dried over MgS04, filtered and evaporated in
vacuo to yield an oil. To a solution of the oil in tetrahydrofuran
(100 ml) was added 10 % aqueous sodium hydroxide solution(20 ml) and
the reaction was stirred for 18 hours. The reaction was concentrated,
washed with ethyl acetate (2 x 30 ml) and acidified with 2M HC1 to pH
2. The aqueous layer was extracted with dichloromethane (2 x 100 ml),
then the extracts were dried over MgSO4, filtered and evaporated to
yield 1-[3-(4-oxo-3,4-dihydrophthalazin-l-ylmethyl)benzoyljpiperidine-
4-carboxylic acid (C) as a yellow solid (7.0 g, 65 %), m/z [M+l]+ 392
(96 % purity), 5H 1.3-1.8 (5H, m) , 2.8-3.1 (4H, m), 4.4 (2H, s), 7.2-
7.3 (1H, m ) , 7 . 3 - 7 . 4 (1H, m) , 7 . 7 - 8 . 0 (5H, m) , 8 . 2 - 8 . 3 (1H, m) , 12.6
(1H, s) .
d. 1-[2-Fluoro-5-(4-oxo-3,4-dihydrophthalazin-lylmethyl)
benzoyl]piperidine-4-carboxylic acid (D)
(B) (D)
2-Fluoro-5-(4-oxo-3,4-dihydrophthalazin-l-ylmethyl)benzole acid
(B)(3.1 g, 0.14 mol), ethyl isonipecotate (1.7 ml, 0.11 mol), 2-(lHbenzotriazol-
1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
(HBTU) (5.1 g, 0.13 mol) and N,N,-diisopropylethylamine (10.0 ml, 0.5$
mol) were added to dimethylacetamide (15 ml) and stirred for 18 hours
Water (100 ml) was added to the reaction mixture and the product was
extracted into dichloromethane (4 x 50 ml). The combined organic
layers were, filtered, washed with water (3 x 100 ml), dried over
MgS04, filtered and evaporated in vacuo to yield an orange oil. The oijl
was purified by flash chromatography (ethyl acetate) to yield 1-[2-
fluoro-5 -(4-oxo-3,4-dihydrophthalazin-1-ylmethyl)benzoyl]piperidine-4
carboxylic acid as the methyl ester (1.5 g, 33 %, 96 % purity). To a
solution of the methyl ester in tetrahydrofuran: water (2:1, 40 ml)
was added sodium hydroxide (0.3 g, 0.075 mol) and the reaction was
stirred for 18 h. The reaction was concentrated, washed with ethyl
acetate (2 x 20 ml) and acidified with 2M HC1 to pH 2. The aqueous
layer was extracted with dichloromethane (2 x 20 ml), and the combined
extracts were dried over MgS04 and evaporated to yield 1-[3-(4-oxo-3,4
dihydrophthalazin-1-ylmethyl)benzoyl]piperidine-4-carboxylic acid (D)
as a yellow solid (0.6 g, 65 %), m/z [M+l]+ 392 (96 % purity)
Example 1 - Synthesis of Key Compounds
a. Synthesis of 4- [3-(piperazine-1-carbonyl)benzyl]-2H-phthalazin-l
one (1)
(A) (1)
3-(4-Oxo-3,4-dihydrophthalazin-1-ylmethyl)benzole acid (A)(5.0g,
O.lVmol), tert-butyl 1-piperazinecarboxylate (3.9 g, 0.21 mol), 2-(lH
benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
(HBTU) (8.6 g, 0.22 mol) and N,N,-diisopropylethylamine (6.7 ml, 0.38
mol) were added to dimethylacetamide (40 ml) and stirred for 18 hours
Water (100 ml) was added and the reaction mixture was heated to 100°C
for 1 hour. The suspension was cooled to room temperature, filtered
and dried to yield a white solid. The solid was dissolved in a
solution of 6M HC1 and ethanol (2:1, 50 ml) and stirred for 1 hour.
The reaction was concentrated, basified with ammonia to pH 9, and the
product was extracted into dichloromethane (2 x 50 ml). The combined
organic layers were washed with water (2 x 50 ml), dried over MgS04,
and evaporated in vacua to yield 4-[3-(piperazine-1-carbonyl)benzyl]-
2H-phthalazin-l-one (1) as a yellow crystalline solid (4.0 g, 77 %);
m/z [M+lj* 349 (97 % purity), 5H 2.6-3.8 (8H, m), 4.4 (2H, s), 7.2-7.5
(4H, m) , 7.7-8.0 (3H, m) , 8.2-8.3 (1H, m) , 12.6 (1H, s)
b. Synthesis of 4-[4-Fluoro-3-(piperazine-1-carbonyl)benzyl]-2Hphthalazin-
1-one (2)
The synthesis was carried out according to the method described in (a)
above using 2-fluoro-5-(4-oxo-3,4-dihydrophthalazin-1-ylmethyl)benzoic
acid (B) to yield 4-[4-fluoro-3-(piperazine-l-carbonyl)benzyl]-2Hphthalazin-
1-one (2) as a white crystalline solid (4.8 g, 76 %); m/z
[M+l]+ 367 (97 % purity), 6H 2.6-3.8 (8H, m) , 4.4 (2H, s), 7.2-7.5 (3H
m), 7.7-8.0 (3H, m) , 8.2-8.3 (1H, m), 12.6 (1H, s) .
c. Synthesis of 4-[3-([1,4]diazepane-1-carbonyl)benzyl]-2Hphthalazin-
1-one (3)
(A) (3)
The synthesis was carried out according to the method described in (a
above using 3-(4-oxo-3,4-dihydrophthalazin-l-ylmethyl)benzoic acid (A
and tert-butyl 1-homopiperazine carboxylate to yield 4-[3-
([1,4]diazepane-1-carbonyl)benzyl]-2H-phthalazin-l-one (3) as a grey
crystalline solid (5.3 g, 97 %); m/z [M+l]+ 363 (97 % purity); 5H 2.6-
3.8 (10H, m), 4.4 (2H, s), 7.2-7.5 (4H, m) , 7.7-8.0 (3H, m) , 8.2-8.3
(1H, m), 12.6 (1H, s) .
d. Synthesis of 4-[3-([1,4]diazepane-1-carbonyl)-4-fluorobenzyl]-2Hphthalazin-
1-one (4)
The synthesis was carried out according to the method described in (a
above using 2-f luoro-5- (4-oxo-3, 4-dihydrophthalazin-l-ylmethyl)benzoic):
acid (B) and tert-butyl 1-homopiperazinecarboxylate to yield 4-[3-
( [1, 4] diazepane-l-carbonyl)benzyl]-2H-phthalazin-l-one (4) as a yellovj?
crystalline solid (5.3 g, 68 %); m/z [M+l]+ 381 (97 % purity); 5H 2.6-
3.8 (10H, m), 4.4 (2H, s), 7.2-7.5 (3H, m) , 7.7-8.0 (3H, m) , 8.2-8.3
(1H, m), 12.6 (1H, s) .
Example 2
a. 4-{3-[4-(6-Chlorobenzothiazol-2-yl)-I, 4-diazepan-lylcarbonyl]
benzyl}-1(2H)-phthalazinone
(A) (5)
2-(IH-Benzotriazol-l-yl)-1,1,3,3-tetramethyluronium tetrafluoroborate
(150 mg, 0.47 mmol), diisopropylethylamine (102 mg, 0.8 mmol) and 6-
chloro-2-(1,4-diazepan-l-yl)-1,3-benzothiazole (115 mg, 0.43 mmol)
were added sequentially at ambient temperature to a stirred solution
of 3-(4-oxo-3,4-dihydrophthalazin-l-ylmethyl)benzoic acid (A)(100 mg,
0.36 mmol) in dry dimethylacetamide (1 ml), the mixture was stirred a
ambient temperature for 1 hour and allowed to stand at ambient
temperature for 16 hours, then it was added dropwise to stirred cold
water (10 ml). After 30 minutes, the resulting solid was collected b
filtration, washed with water (2x1 ml) and hexane (1 ml), dried in
vacuo and purified using preparative HPLC to give the desired compound!
(5)(166 mg) as a grey solid; HPLC purity 90%; HPLC Retention time 4.2:.
minutes; m/z (M+H)*' 530.
b. The following compounds were synthesised in a manner analogous to
that described in (a) above, but using appropriate alternative amine
starting materials.
(Table Removed)
Note 1: 13 did not require purification via preparative scale HPLC
the product from the reaction was essentially pure.
(Table Removed)

5 Example 3
a. 4-{3-[4-(4-fluorophenyl)piperazin-l-ylcarbonyl]benzyl}-1(2H)
phthalazinone (22)
2-(IH-Benzotriazol-l-yl)-1,1,3,3-tetramethyluronium tetrafluoroborate
55
(150 mg, 0.47 mmol), diisopropylethylamine (102 mg, 0.8 mmol) and 1-
(4-fluorophenyl)piperazine (65 mg, 0.47 mmol) were added sequentially
at ambient temperature to a stirred solution of 3-(4-oxo-3,4-
dihydrophthalazin-l-ylmethyl)benzoic acid (A)(100 mg, 0.36 mmol) in
dry dimethylacetamide (1 ml), the mixture was stirred at ambient
temperature for 4 hours and allowed to stand at ambient temperature
for 16 hours, then it was added dropwise to stirred cold water (10
ml). After 30 minutes, the resulting solid was collected by
filtration, washed with water (2x1 ml) and hexane (1 ml), dried in
vacuo and purified using preparative HPLC to give 4-{3-[4-(4-
fluorophenyl)piperazin-l-ylcarbonyl]benzyl}-1(2H)-phthalazinone
(22) (76 mg) as a cream solid; m/z (M+H)+i 443; HPLC Purity 90%; HPLC
Retention time 4.00 minutes.
b. The following compounds were synthesised in a manner analogous to
that described in (a) above, but using appropriate alternative amine
starting materials.
(Table Removed)

Note 2: 36 did not require purification via preparative scale HPLC
the product from the reaction was essentially pure.
Example 4
1-[3-(4-0x0-3,4-dihydro-phthalazin-l-ylmethyl)-benzoyl]-piperidine-4-
carboxylic acid (C) (0.24 mmol) was added to a solution of the
appropriate amine (0.2 mmol) in dimethylacetamide (2 ml). 2-(lHBenzotriazole-
1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
(0.3 mmol) and Hunigs base (0.4 mmol) were then added and the reaction
was stirred at room temperature for 16 hours. The reaction mixtures
were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)
Example 5
1-[2-Fluoro-5-(4-Oxo-3,4-dihydrophthalazin-l-ylmethyl)benzoyl]-
piperidine-4-carboxylic acid (D) (0.24 mmol) was added to a solution
of the appropriate amine (0.2 mmol) in dimethylacetamide (2 ml). 2-
(IH-Benzotriazole-l-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
(0.3 mmol) and Hunigs base (0.4 mmol) were then added and the reactior
was stirred at room temperature for 16 hours. The reaction mixtures
were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)
Example 6
The appropriate sulphonyl chloride (0.24 mmol) was added to a solution
of 4-[3-(piperazine-l-carbonyl)benzyl]-2H-phthalazin-l-one (1) (0.2
mmol) in dichloromethane (2 ml). Hunigs base (0.4 mmol) was then added
and the reaction was stirred at room temperature for 16 hours. The
reaction mixtures were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 7
The appropriate sulphonyl chloride (0.24 mmol) was added to a solution
of 4-[3-([1,4]diazepane-1-carbonyl)benzyl]-2H-phthalazin-l-one (3)
(0.2 mmol) in dichloromethane (2 ml). Hunigs base (0.4 mmol) was then
added and the reaction was stirred at room temperature for 16 hours.
The reaction mixtures were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 8
The appropriate acid chloride (0.24 mmol) was added to a solution of
4-[3 -(piperazine-1-carbonyl)benzyl]-2H-phthalazin-l-one (1) (0.2 mmol)
in dichloromethane (2 ml). Hunigs base (0.4 mmol) was then added and
the reaction was stirred at room temperature for 16 hours. The
reaction mixtures were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)
The appropriate acid chloride (0.24 mmol) was added to a solution of
4-[4-Fluoro-3-(piperazine-l-carbonyl)benzyl]-2H-phthalazin-l-one (2)
(0.2 mmol) in dichloromethane (2 ml). Hunigs base (0.4 mmol) was then
added and the reaction was stirred at room temperature for 16 hours.
The reaction mixtures were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 10
The appropriate acid chloride (0.24 mmol) was added to a solution of
4-[3-([1,4]diazepane-1-carbonyl)benzyl]-2H-phthalazin-l-one (3) (0.2
mmol) in dichloromethane (2 ml). Hunigs base (0.4 mmol) was then addecjl
and the reaction was stirred at room temperature for 16 hours. The
reaction mixtures were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 11
The appropriate acid chloride (0.24 mmol) was added to a solution of
4-[3-([1,4]diazepane-1-carbonyl)-4-fluorobenzyl]-2H-phthalazin-l-one
(4) (0.2 mmol) in dichloromethane (2 ml). Hunigs base (0.4 mmol) was
then added and the reaction was stirred at room temperature for 16
hours. The reaction mixtures were then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 12
The appropriate isocyanate (0.24 mmol) was added to a solution of 4-
[3-(piperazine-1-carbonyl)benzyl]-2H-phthalazin-l-one (1) (0.2 mmol)
in dichloromethane (2 ml). The reaction was stirred at room
temperature for 16 hours. The reaction mixtures were then purified by
preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)
Example 13
The appropriate isothiocyanate (0.24 mmol) was added to a solution of
4-[3-(piperazine-1-carbonyl)benzyl]-2H-phthalazin-l-one (1) (0.2 mmol)
in dichloromethane (2 ml). The reaction was stirred at room
temperature for 16 hours. The reaction mixtures were then purified by
preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 14
3-(4-Oxo-3,4-dihydrophthalazin-1-ylmethyl)benzole acid (A) (0.24 mmol)
was added to a solution of the appropriate amine (0.2 mmol) in
dimethylacetamide (2 ml). 2-(IH-Benzotriazol-l-yl)-1,1,3,3-
tetramethyluronium hexafluorophosphate (0.3 mmol) and Hunigs base (0.4
mmol) were then added and the reaction was stirred at room temperature
for 16 hours. The reaction mixtures were then purified by preparatory
HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 15
2-Fluoro-5-(4-oxo-3,4-dihydrophthalazin-1-ylmethyl)benzoic acid (B)
(0.24 mmol) was added to a solution of the appropriate amine (0.2
mmol) in dimethylacetamide (2 ml). 2-(IH-Benzotriazol-l-yl)-1,1,3,3-
tetramethyluronium hexafluorophosphate (0.3 mmol) and Hunigs base (0. mmol) were then added and the reaction was stirred at room temperatures
for 16 hours. The reaction mixtures were then purified by preparative
HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 16
An appriopriate aldehyde (0.2 mmol) and 4-[3-(piperazine-1-
carbonyl)benzyl]-2H-phthalazin-l-one (1)(0.24 mmol) were dissolved in
dichloromethane (2 ml). Sodium triacetoxyborohydride (0.28 mmol) and
glacial acetic acid (6.0 mmol) were then added and stirred at room
temperature for 16 hours. The reaction mixtures were then purified by
preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 17
An appriopriate aldehyde (0.2 mmol) and 4-[4-Fluoro-3-(piperazine-1-
carbonyl)benzyl]-2H-phthalazin-l-one (2)(0.24 mmol) were dissolved in
dichloromethane (2 ml). Sodium triacetoxyborohydride (0.28 mmol) and
glacial acetic acid (6.0 mmol) were then added and stirred at room
temperature for 16 hours. The reaction mixtures were then purified by
preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 18
An appriopriate aldehyde (0.2 mmol) and 4-[3-([1,4]diazepane-1-
carbonyl)benzyl]-2H-phthalazin-l-one (3) (0.24 mmol) were dissolved in
dichloromethane (2 ml). Sodium triacetoxyborohydride (0.28 mmol) and
glacial acetic acid (6.0 mmol) were then added and stirred at room
temperature for 16 hours. The reaction mixtures were then purified by
preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)
Example 19
An appriopriate aldehyde (0.2 mmol) and 4-[3-([1, 4] diazepane-1-
carbonyl)-4-fluorobenzyl]-2H-phthalazin-l-one (4)(0.24 mmol) were
dissolved in dichloromethane (2 ml). Sodium triacetoxyborohydride
(0.28 mmol) and glacial acetic acid (6.0 mmol) were then added and
stirred at room temperature for 16 hours. The reaction mixtures were
then purified by preparative HPLC.
The compounds synthesised are set out below.
(Table Removed)

Example 20
In order to assess the inhibitory action of the compounds, the
following assay was used to determine IC50 values.
Mammalian PARP, isolated from Hela cell nuclear extract, was incubate^
with Z-buffer (25mM Hepes (Sigma); 12.5 mM MgCl2 (Sigma); 50mM KC1
(Sigma); I mM DTT (Sigma); 10% Glycerol (Sigma) 0.001% NP-40 (Sigma);
pH 7.4) in 96 well FlashPlates (TRADE MARK) (NEN, UK) and varying
concentrations of said inhibitors added. All compounds were diluted iiji
DMSO and gave final assay concentrations of between 10 and 0.01 (iM,
with the DMSO being at a final concentration of 1% per well. The tota
assay volume per well was 40 μ1.
After 10 minutes incubation at 30°C the reactions were initiated by the
addition of a 10 ^il reaction mixture, containing NAD (5uM), 3H-NAD and
30mer double stranded DNA-oligos. Designated positive and negative
reaction wells were done in combination with compound wells (unknowns;
in order to calculate % enzyme activities. The plates were then
shaken for 2 minutes and incubated at 30°C for 45 minutes.
Following the incubation, the reactions were quenched by the addition
of 50 \il 30% acetic acid to each well. The plates were then shaken
for 1 hour at room temperature.
The plates were transferred to a TopCount NXT (TRADE MARK) (Packard,
UK) for scintillation counting. Values recorded are counts per minut
(cpm) following a 30 second counting of each well.
The % enzyme activity for each compound is then calculated using the
following equation:
(cpm of unknowns -mean negative cpm) ]}
% Inhibition =100 { lOOx——
(mean positive cpm-mean neagative cpm),/
IC50 values (the concentration at which 50% of the enzyme activity is
inhibited) were calculated, which are determined over a range of
different concentrations, normally from 10 ^M down to 0.001 μM. Such
IC50 values are used as comparative values to identify increased
compound potencies.
All compounds tested had a IC50 of less than 0.1 μM.
The following compounds have an IC50 of less than 0.01μM: 2, 3, 4, 5 9
10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 27, 28, 29, 31, 33, 34,
35, 37, 40, 41, 44, 46, 47, 48, 49, 51, 53, 73, 74, 75, 76, 77, 78,
79, 80, 83, 84, 85, 97, 98, 99, 101, 103, 105, 106, 107, 111, 112,
113, 114, 117, 118, 119, 120, 121, 122, 130, 131, 132, 133, 138, 139,
140, 143, 149, 153, 155, 156, 157, 159, 160, 161, 175, 176, 177, 178,
179, 181, 182, 186, 188, 190, 191, 195, 197, 198, 200, 201, 202, 203,
205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 216, 217, 218, 219,
221, 222, 223, 225, 226, 227, 228, 229, 232, 237, 240, 243, 245, 246,
256.
The following compounds, as well as those above, have an ICSO of less
than 0.02/xM: 1, 6, 7, 8, 11, 12, 22, 23, 24, 26, 32, 36, 38, 39, 42,
43, 45, 50, 54, 55, 56, 58, 59, 81, 82, 86, 87, 88, 89, 90, 91, 92,
93, 94, 95, 96, 100, 104, 108, 109, 110, 115, 116, 123, 126, 127, 128
134, 135, 137, 141, 145, 146, 147, 150, 151, 152, 154, 158, 162, 163,
174, 180, 185, 187, 189, 192, 193, 194, 196, 199, 204, 215, 220, 224,
230, 233, 234, 235, 239, 241, 242, 244, 250, 251, 258, 259 and 261.
The Potentiation Factor (PF50) for compounds is calculated as a ratio
of the IC50 of control cell growth divided by the IC50 of cell growth +
PARP inhibitor. Growth inhibition curves for both control and compound
treated cells are in the presence of the alkylating agent methyl
methanesulfonate (MMS). The test compounds were used at a fixed
concentration of 0.2 micromolar. The concentrations of MMS were over
a range from 0 to 10 ng/ml.
Cell growth was assessed using the sulforhodamine B (SRB) assay
(Skehan, P., et al., (1990) New colorimetric cytotoxicity assay for
anticancer-drug screening. J. Natl. Cancer Inst. 82, 1107-1112.).
2,000 HeLa cells were seeded into each well of a flat-bottomed 96-wel
microtiter plate in a volume of 100 |al and incubated for 6 hours at
37°C. Cells were either replaced with media alone or with media
containing PARP inhibitor at a final concentration of 0.5, 1 or 5 (iM.
Cells were allowed to grow for a further 1 hour before the addition
of MMS at a range of concentrations (typically 0, 1, 2, 3, 5, 7 and 1
(xg/ml) to either untreated cells or PARP inhibitor treated cells.
Cells treated with PARP inhibitor alone were used to assess the growt
inhibition by the PARP inhibitor.
Cells were left for a further 16 hours before replacing the media and
allowing the cells to grow for a further 72 hours at 37°C. The media
was then removed and the cells fixed with lOOjal of ice cold 10% (w/v)
trichloroacetic acid. The plates were incubated at 4°C for 20
minutes and then washed four times with water. Each well of cells wa
then stained with lOOjal of 0.4% (w/v) SRB in 1% acetic acid for 20
minutes before washing four times with 1% acetic acid. Plates were
then dried for 2 hours at room temperature. The dye from the stained
cells was solubilized by the addition of 100μl of lOmM Tris Base into
each well. Plates were gently shaken and left at room temperature fo
30 minutes before measuring the optical density at 564nM on a
Microquant microtiter plate reader.
All the compounds tested had a PF50 at 200nM of at least 2.0.
Example 21
Materials and Methods
Small molecule inhibitors of PARP:
Compound (4) was dissolved in DMSO at lOmM and stored at -20°C in tl
dark.
Cell Lines
VC8 cells and the mouse Brca2 BAG complemented derivatives were as
described in M. Kraakman-van der Zwet, et al., Mol Cell Biol 22, 669-
79 (2002)). ES cells defective in Brca2 function have been described
previously (Tutt, et al., EMBO Rep 3, 255-60 (2002)). The construction
of ES cells defective in Brcal will be described elsewhere but have
previously been validated (Foray, et al., Embo J, 22, 2860-71 (2003))
Clonogenic Assays
For measurement of cellular sensitivity to a PARP inhibitor (compound
4), cell cultures in exponential growth were trypsinised and seeded at
various densities in 6-well plates onto Mitomycin C inactivated mouse
embryonic fibroblasts and where appropriate treated with the test
compound after 18 hours. For continuous exposure, cells were re-fed
every 4 days with fresh medium and inhibitor. After 10-14 days, cells
were washed with PBS, fixed in methanol and stained with crystal
violet. Colonies containing greater than approximately 50 cells were
counted. Experiments were performed at least three times in
triplicate.
Results
Reduction in the viability of BRCA1 and BRCA2 deficient cells
Compound 4 was used to probe the sensitivity of cells deficient in
Brcal or Brca2 to the inhibition of PARP activity. Clonogenic assays
showed that both Brcal and Brca2 deficient cell lines were extremely
sensitive to compound 4 compared to otherwise isogenic cells (Fig. 1A
IB). The SF50 (dosage at which 50% of cells survived) for Compound 4
was 1.5 x 10"8M for cells deficient in Brcal, whilst the SF50 for
matched wild type cells was 7 x 10"6M (Figure 1A). This represents a
factor of 467 fold enhanced sensitivity of Brcal mutant cells compare^
to wild type cells.
The SF50 for Compound 4 was 1.2 x 10-8M for cells deficient in Brca2
whilst the SF50 for matched wild type cells was 1.8 x 10"5M (Figure IB)
This represents a factor of 1,500 fold enhanced sensitivity of Brca2
mutant cells compared to wild type cells. Similar results were
obtained with Chinese hamster ovary cells deficient in Brca2 (VC8)
compared to a Brca2-complememted derivative (VC8-BAC)(Figure 2). The
SF50 for Compound 4 was 5 x 10"8M for the Brca2 deficient VC8 line
whilst the SF50 for matched control, VC8-BAC, was 3 x 10'5M (Figure 2)
This represents a factor of 600 fold enhanced sensitivity of Brca2
mutant cells compared to wild type cells.


WE CLAIM:
1. A phthalazinone derivative of the following formula:


(Formula Removed)

or isomers, salts, or solvates thereof.
2. A pharmaceutical composition as and when prepared by
using the phthalazinone derivative as claimed in claim 1.

Documents:

3895-DELNP-2005-Abstract-(16-12-2008).pdf

3895-DELNP-2005-Abstract-08-12-2008.pdf

3895-delnp-2005-abstract.pdf

3895-DELNP-2005-Claims-(15-12-2008).pdf

3895-DELNP-2005-Claims-(16-12-2008).pdf

3895-DELNP-2005-Claims-08-12-2008.pdf

3895-delnp-2005-claims.pdf

3895-DELNP-2005-Correspondence-Others-(15-12-2008).pdf

3895-DELNP-2005-Correspondence-Others-(16-12-2008).pdf

3895-DELNP-2005-Correspondence-Others-08-12-2008.pdf

3895-DELNP-2005-Correspondence-Others-13-06-2008.pdf

3895-delnp-2005-correspondence-others.pdf

3895-DELNP-2005-Description (Complete)-(16-12-2008).pdf

3895-delnp-2005-description (complete).pdf

3895-delnp-2005-drawings.pdf

3895-DELNP-2005-Form-1-(16-12-2008).pdf

3895-delnp-2005-form-1.pdf

3895-delnp-2005-form-18.pdf

3895-DELNP-2005-Form-2-(16-12-2008).pdf

3895-DELNP-2005-Form-2-08-12-2008.pdf

3895-delnp-2005-form-2.pdf

3895-DELNP-2005-Form-3-08-12-2008.pdf

3895-delnp-2005-form-3.pdf

3895-delnp-2005-form-5.pdf

3895-DELNP-2005-GPA-(15-12-2008).pdf

3895-delnp-2005-gpa.pdf

3895-DELNP-2005-Others-Document-08-12-2008.pdf

3895-delnp-2005-pct-210.pdf

3895-DELNP-2005-PCT-237-08-12-2008.pdf

3895-delnp-2005-pct-304.pdf

3895-delnp-2005-pct-373-08-12-2008.pdf

3895-delnp-2005-petition -138.pdf

3895-DELNP-2005-Petition-137-08-12-2008.pdf

abstract.jpg


Patent Number 228720
Indian Patent Application Number 3895/DELNP/2005
PG Journal Number 08/2009
Publication Date 20-Feb-2009
Grant Date 10-Feb-2009
Date of Filing 31-Aug-2005
Name of Patentee MAYBRIDGE LIMITED
Applicant Address TREVILLETT, TINTAGEL, CORNWALL PL34 0HW, UNITED KINGDOM.
Inventors:
# Inventor's Name Inventor's Address
1 SMITH, GRAEME CAMERON BARR KUDOS PHARMACEUTICALS LTD.,OF 327 CAMBRIDGE SCIENCE PARK, MILTON ROAD, CAMBRIDGE, CAMBRIDGESHIRE CB4 0WG, UNITED KINGDOM.
2 MARTIN, NIALL MORRISON BARR KUDOS PHARMACEUTICALS LTD.,OF 327 CAMBRIDGE SCIENCE PARK, MILTON ROAD, CAMBRIDGE, CAMBRIDGESHIRE CB4 0WG, UNITED KINGDOM.
3 LOH, VINCENT M. JUNIOR CHEMOVATION LTD., OF FOUNDRY LANE, HORSHAM, SUSSEX RH13 5PX, UNITED KINGDOM.
4 COCKCROFT, XIAO-LING FAN CHEMOVATION LTD., OF FOUNDRY LANE, HORSHAM, SUSSEX RH13 5PX, UNITED KINGDOM.
5 ASHWORTH, ALAN THE BREAKTHROUGH BREAST CANCER RESEARCH CENTRE, INSTITUTE OF CANCER RESEARCH, FULHAM ROAD, GREATER LONDON, LONDON SW3 6JB, UNITED KINGDOM.
6 KERRIGAN, FRANK MAYBRIDGE LTD., OF TREVILLETT, TINTAGEL, CORNWALL PL13 0HW, UNITED KINGDOM.
7 MENEAR, KEITH ALLAN CHEMOVATION LTD., OF FOUNDRY LANE, HORSHAM, SUSSEX RH13 5PX, UNITED KINGDOM.
8 JACKSON, STEPHEN PHILIP KUDOS PHARMACEUTICALS LTD.,OF 327 CAMBRIDGE SCIENCE PARK, MILTON ROAD, CAMBRIDGE, CAMBRIDGESHIRE CB4 0WG, UNITED KINGDOM.
9 MATTHEWS, IAN TIMOTHY WILLIAMS CHEMOVATION LTD., OF FOUNDRY LANE, HORSHAM, SUSSEX RH13 5PX, UNITED KINGDOM.
PCT International Classification Number C07D 237/32
PCT International Application Number PCT/GB2004/001059
PCT International Filing date 2004-03-12
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/493,399 2003-08-06 U.K.
2 60/526,244 2003-12-01 U.K.
3 0305681.9 2003-03-12 U.K.
4 60/454,995 2003-03-14 U.K.