Title of Invention

A METHOD OF CONFERRING LOW-TEMPERATURE STRESS, WATER STRESS OR SALT STRESS TOLERANCE TO A MONOCOT RICE PLANT

Abstract This invention relates to a method of conferring low-temperature stress, water stress, or salt stress tolerance to a monocot rice plant comprising: transforming a monocot plant cell or protoplast with a nucleic acid construct comprising trehalose-6- phosphate synthase/trehalose-6-phosphate phosphatase fusion gene encoded by E. coli, under control of an inducible promoter, which comprises an RbcS promoter or an abscisic acid-inducible promoter, to confer low temperature stress, salt stress, or water stress tolerance to monocot rice plants produced from the monocot rice plant cell or protoplast.
Full Text TPS PLANT GENE CONSTRUCTS AND TRANSFORMANTS
[0001) This apphcation claims the benefit of U.S. Provisional Patent
Application Serial No. 60/424,410, filed November 6,2002, and US- Provisional
Patent Application Serial No, 60/430,861, filed December 4, 2002.
FIELD OF THE INVENTION
[0002) The present invention relates to transgenic mauocot plants which axe
transformed with a nucleic acid encoding an enzyme in die trehalose biosynthetic
pathway to increase tolerance to low temperature stress, water stress, and salt stress.
BACKGROUND OF THE INVENTION
[0003] The explosive increase in world population, along with the continuing
deterioration of arable land, scarcity of fresh water, and increasing environmental stress pose serious threats to global agricultural production and food security. Despite focused efforts to improve major crops for resistance to abiotic stresses such as drought, excessive salinity, and low temperature by traditional breeding,, success has been limited (Boyer, J, S., "Plant Productivity and Environment," Science, 218:443-448 (1982)), This lade of desirable progress is attributable to the fact that tolerance to abiotic stress is a complex trait that is influenced by coordinated and differential expression of a network of genes. Fortunately, it is now possibleto use transgenic approaches to improve abiotic stress tolerance in agriculturally importanttrops with far fewer target traits than had been anticipated (Zhang et d., "Engineering Salt-Tolerant Brassica Plants: Characterization of Yield and Seed Oil Quality in Transgenic Plants wife Increased Vacuolar Sodium Accunulation," Proc, Natl Acad. Set. USA, 98:12832-12836 (2001)).
[0004] Abiotic stresses can directly or indirectly affect (he physiological status
of an organism by altering its metabolism, growth, and development A common response of organisms to drought, salinity, and low-cmperature stresses is the accumulation of sugars and other compatible solutes (Hare et aL, 'Dissecting the

Roles of Osmolyte Accumulation During Stress "Plant Cell Environ., 21:535-553
(1998)). These compounds serve as osmoprotectants and, in some cases, stabilize
biomolecuks under stress conditions (Hire et aL, "Dissecting the Roles of Osmolyte
Accumulation During Stress," Plant Cell Environ., 21:535-553 (1998); Yancey et aL,
'living with Water Stress: Evolution of Osmolyte Systems,* Science, 217:1214-1222
(1982))- One such compound is trehalose, anonredudng disaccharide of glucose,
which plays an important physiological role as an abiotic stress protectant in a huge
number of organisms, including bacteria, yeast, and invertebrates (Crowe et aL,
"Anhydrobiosis3w^wnw. Rev. Physiol, 54:579-599 (1992))- Trehalose has been shown
to stabilize dehydrated enzymes, proteins, and lipid membranes efficiently, as well as
protect biological structures from damage during desiccation. In the plant kingdom,
most species do not seem to accumulate detectable amounts of trehalose, with the
notable exception of the highly desiccation-tolerant "resurrection plants" (Wingler,
"The Function of Trehalose Biosynthesis in Plants," PhytocJiermstry” 60:437-440
(2002)). The recent discovery of homologous genes for trehalose biosynthesis in
Selagimlla lepidophytta, Arabidopsis thaliana, and several crop plants suggests that
the ability to synthesize trehalose may be widely distributed in the plant kingdom
(Goddijn et aL, "Trehalose Metabolism in Plants," Trends Plant ScL9 4:315-319
(1999))- A putative plant gene for trehalose-6*phosphate synthase (TPS)can
complement a &tpsl mutant yeast strain, suggesting that the plant and yeast gene
products are functionally similar (Zentella et aL, "A Selaginella lepidophytta
Tiehalose-6-Phosphate Synthase Complements Growth and Stress-Tolerance Defects
in a Yeast tpsJ Mutant," Plant Physiol, 119:1473-1482 (1999)).
[0005] In bacteria and yeast, trehalose is synthesized in a two-step process:
trehalose-6-phosphate is first formed fiom UDP-glucoseand gjtocose-6-phosphate in a reaction catalyzed by TPS. Trehalose-6-phosphaieis then converted to trehalose by trehalos--6-phosphate phosphatase (TPP) (Goddijn et aL, "Trehalose Metabolism in Plants,'1 Trends Plant Set, 4:315-319 (1999)). Metabolic engineering for enhanced accumulation of trehalose in plants has been the recent focus of attentionin some model dicot plants (Holmstrom et aL, "Drought Tolerance in Tobacco," Nature, 379:683-684 (1996); Goddijn et aL, 'Inhibition of Trehalase Activity Enhances Trehalose Accumulation in Transgenic Plants, Plant Pjysiol, 113:181-190 (1997);

Romero et aL, "Expression of the Yeast Trehalose-6-Phosphate Synthase Gene in Transgenic Tobacco Plants: Pleiotropic Phenotypes Include Draught Tolerance," Plants 201293-297 (1997); Pilon-Smits et aL, "Trehalose-Producing Transgenic Tobacco Plants Show Improved Growth Performance Under Drought Stress," J. Plant Physiol? 152:525-532 (1998)). However, in these previous studies, constitutive ova-expression of TPS and/or TPP genes from yeast at Escherichia coli in tobacco or potato plants resulted in undesirable pleiotiopic effects, including stunted growth and altered metabolism under normal growth conditions (Goddijn et aL, "Inhibition of Trehalase Activity Enhances Trehalose Accumulation in Transgenic Plants," Plant Physiol, 113:181-190 (1997); Romero et aL, "Expression of the Yeast Itehalosc-6-Phosphate Synthase Gene in Transgenic Tobacco Plants: Pleiotiopic Phenotypes Include Drought Tolerance," Plants 201:293-297 (1997); Pilon-Smits et aL, 'Trehalose-Producing Transgenic Tobacco Plants Show Improved Growth Performance Under Drougit Stress," 1 Plant Physiol, 152:525-532 (1998)). The present invention is directed to producing transgenic monocot plants with improved low temperature stress, water stress, and salt stress tolerance.
SUMMARY OF THE INVENTION
[0006] The present invention relates to a transgenic monocot plant transformed
with a nucleic acid encoding an enzyme for trehalose biosynthesis, under the control of an inducible promoter, that confers low temperature, salt, and water stress tolerance to a monocot plant
[0007] The present invention further relates to a monocot plant cell or
protoplast transformed with a nucleic acid encoding an enzyme for trehalose biosynthesis, under control of an inducible promoter, that confers low temperature, salt, and water stress tolerance to a monocot plant regenerated from a monocot plant cell or protoplast
[0008] The present invention also relates to a method of conferring tolerance
to low temperature, salt, and water stress to a monocot plant by transforming a monocot plant cell or protoplast with a nucleic add encoding an enzyme for trehalose biosynthesis, under control of an inducible promoter, under conditions effective to

impart low temperature, salt and water stress tolerance to monocot plants regenerated from the monocot plant cell or protoplast
[0009) Another aspect of the present invention further relates to a method of
increasing tolerance of monocot plant to low temperature, salt, or water stress conditions by increasing the levels of an enzyme for trehalose biosynthesis in the monocot plant
[0010] The present invention also relates to a transgenic monocot plant
transformed wife a plasmid feat confers low temperature, salt, and water stress
tolerance to the monocot plant where fee plasmid comprises a first nucleic acid
encoding trehalose-6-phosphate synthase, a first inducible promoter, fee promoter
located 5' to fee first nucleic add and controlling expression of fee first nucleic acid,
and a first termination sequence located 3' to the first nucleic acid.
[0011] Considering fee importance of rice as a major crop, developing new.
cultivars wife enhanced abiotic stress tolerance would undoubtedly have an enormous
impact on global food production. It was decided to improve abiotic stress tolerance
by transfbnningrice wife a irehalose-6-phosphate synthase/phosphatase (TPSP) fusion
gene feat includes fee coding regions of the £. coli ot&A and otsB genes (encoding
IPS and TPP, respectively) (Seo et aL, "Characterization of a Bifunctional Enzyme
Fusion of Trehalose-6-Phosphate Synthetase and Trehalose-6-Phosphafce Phosphatase
of Escherichia coli? Appl Environ, Microbiol, 66:2484-2490(2000))- Ibis approach
has fee dual advantages of necessitating only a single transformation event and
producing a higher net catalytic efficiency for trehalose formation (Seo ct at,
"Characterization of a Bifunctional Enzyme Fusion of Trehalose-6-Phosphate
Synthetase and Trehalose-6-Phosphate Phosphatase of Escherichia coli," Appl
Environ. Microbiol, 66:2484-2490(2000)), Because indica ricevarieties represent
80% of rice grown worldwide, fee economically valuable indica rice Pusa Basmati-1
(PB-1) was chosen to transform, even though transformation and regeneration are
more difficultfean in japonica ricevarieties. Therefore, whatever has been
accomplished wife an indica rice works equally well wife japonica rice variety.
[0012] It was shown feat engineering trehalose overproduction in rice can be
achieved by stress-inducible or tissue-specific expression of bifunctional TPSP fusion enzyme without any detrimental effect on plant growth or grain yield.During abiotic

stress, transgenicplants accumulated increased amounts of trehalose and showed high levels of tolerance to salt, drought, and low-temperature stresses, as compared with the nontransfoimed plant These results demonstrate the potential use of the transgenic approach in developing newrice cultivars with increased abiotic stress tolerance and enhanced riceproductivity.
[0013] The present invention allows the production of monocot plants with
increased tolerance to low temperature stress, salt stress and water stress (drought). In particular, increased tolerance in response to low temperature, salt, and water stress can be achieved by the activation of trehalose biosynthesis under the control of an inducible promoter.
BRIEF DESCRIPTION OF THE DRAWINGS
[0014] Figures 1A - E show a schematic representation of the expression
vectors and DNA-blot hybridization analysis. Two binary plasmids, each containing the trehalose biosynthetic fusion gene (XPSP) that includes the coding regions of tbe E coli otsA and otsB genes (encoding TPS and TPP, respectively), were constructed and transformed into indica rice. Figure 1A shows the pSB109-TPSP plasmid. Figure 1B shows the pSB-RTSP plasmid. Shaded boxes represent promoter elements (ABA, ABA-indudble; rbcS, rice rbcS; 3SS, cauliflower mosaic virus 55S promoter); KB and LB represent T-DNA border on the right and left sides, respectively. Figure 1 C shows a more detailed schematic representation of pSB109-TPSP and pSB-RTSP including several restriction endonudeotide sites. Figure 1 shows a DNA-blot hybridization analysis from nontransfonned control (NTC) plant, and representative transgenic plants of nine A-lines (Figure 1 D) and five R-lincs (Figure 1E) that were transformed with the plasmid pSBl 09-TPSP and pSB-RTSP, respectively. The rice genomic DNA was digested with HinSSl (a unique site in the plasmid pSBl 09-TPSP, whereas two sites are present in the plasmid pSB-RTSP) and DNA blot hybridization analysis was performed with the 224d, TPSP fiisiongeae as the probe. Molecular sizes (kb) are indicated
[0015] Figures 2A-F show the salt tolerance of rice plants and changes in
mineral nutrition caused by salt stress. Figure 2 A shows plant roots after 4 weeks of

continuous 100 mM Nad stress; the plants were not stressed in NIC Figure 2 B shows dry weight of shoots (black bars) and roots (white bars) of plants grown under salt stress (NTS, R80, and A05) or no stress (NTC) conditions. Figure 2 C shows Western blots of leaf extracts (20 pxg of proteins) immediately after salt stress of plants. (Figures 2 D - F) Plant mineral nutrient content in shoots (blade bars) and roots (white bars) under salt stress (NTS, R80, and A05) or no stress (NTC) conditions. Figure 2D shows Na+. Figure 2 E shows K +. Figure 2F shows Na+K+ ratio. The ionic concentration is presented as mg/g dry weight Values are the means±SD(n = 5),
[0016] Figures 3 A - D show the appearance of plants and chlorophyll
fluorescence parameters during drought stress- Five-week-old nontransformed and T4 generation transgenic (R80 and A05) seedlings grown in soil were subjected to two cycles of 100 h of drought stress followed by watering for 3 weeks. Figure 3 A shows plants grown under well watered conditions (NTC, nontransgenic plants). Figure 3 B shows plants of the same age after two cycles of drought-stress treatment (NTS, nontransgenic plants after drought stress). Figures 3 C and D show chlorophyll fluorescence measurements on young, fully expanded leaves during the first cycle of 100 h of continuous drought stress. Figure 3 C shows 0, a measure of the efficiency of PS II photochemistry under ambient growth conditions. Figure 3 D shows decreases in Fv/Fm are a measure of photooxidative damage to PS & 4, nontransformed plants; , R80; , A05, Dotted lines represent the range of values for nonstressed control plants of all lines. Data represent means ± SD (n = 5) from independent plants.
[0017] Figure 4 shows trehalose content in shoots of transgenic (R80 and A05)
and nontransgenic plants with or without stress. Trehalose accumulation under
nonstressed (white bais), salt-stressed (100 mM NaCl for 4 weeks, hatched bars), or
drought-stressed (100 h, black bars) conditions.
[00181 Figure 5 shows photosystem II election transport rate in
nontransformed and two independent, fifth generation transgenic plants grown under control conditions. The electron transport rate under increasing irradiance was calculated from chlorophyll fluorescence measurements on the youngest fully expanded leaf of NTC (A), R80 (»), and A05 (•) at 3$0 ppm of CO2, 25oC; and 50%

relative humidity after 10 weeks of growth. Values are the means ± SD (« - 9). Data
are normalized to fee average light-saturated rate of the nontransgenic control plants.
[0019] Figures 6 A and B show bi^-perfbrmance anion exchange
chromatography with pulsed amperometric detection (HPAEC-PAD) analysis of
trehalose accumulation in a transgenic rice line. In Figure 6 A, the chromatogram
shows the FAD-response profile from a leaf tissue extract of transgenic line A05, In
Figure 6 B> the chromatogram shows the PAD-response profile of the same sample
after digestion with trehalase enzyme. Arrow indicates the trehalose peat
{0020] Figures 7 A and B show changes in the activity of photosystem II (pn)
and ratio of variable to maximum fluorescence yields (Fv/Fm) during low-temperature stress, respectively. Five-week-old nontransformed and T4 generation transgenic lines (R22, R38, R80 A05, A07, and A27) seedlings were ejqx>sed to 10p C for 72 h under a 10*h light/14-h dark photoperiod (photon flux density of 280 pmol photons nf2 s"1) and a relative humidity of 50-60% and then allowed to recover under normal growth conditions at 25 ± 3°C for 24 h. Activity of fosa. and Fv/Fm were monitored for different time intervals during and after the low-temperature stress. Data represent means ± SD (n - 5) from independent plants. Figure 7 A shows Fv/Fm Figure 7 B shows PSII.
DETAILED DESCRIPTION OF THE INVENTION
[0021] The present invention relates to a transgenic monocot plant transformed
with a nucleic acid encoding an enzyme for trehalose biosynthesis, under the control of an inducible promoter, that confers low temperature, salt, and water stress tolerance to a monocot plant
[0022] The invention provides a method of producing a monocot plant cell or
protoplast useful for regeneration of a low temperature stress, salt stress or water stress tolerant monocot plant by transforming a monocot plant cell or protoplast with a nucleic acid encoding an enzyme for trehalose biosynthesis under the control of an inducible promoter. Once transformation has occurred, the monocot plant cell or protoplast can be regenerated to form a transgenic monocot plant

[0023] The present invention also relates to a method of conferring low
temperature, salt, and water stress tolerance to a monocot plant by transforming a monocot plant cell or protoplast with a nucleic acid encoding an enzyme for trehalose biosynthesis, under control of an inducible promoter, under conditions effective to impart low temperature salt, and water stress tolerance to monocot plants produced from the monocot plant cell or protoplast This method includes transforming the monocot plant with an expression cassette comprising an inducible promoter and a nucleic acid encoding an enzyme for trehalose biosynthesis that confers low temperature, salt, and water stress tolerance to monocot plants, wherein the inducible promoter and the nucleic acid are operably linked together to permit expression of the nucleic acid. In a preferred embodiment, the inducible promoter is comprised of at least one ABRC unit and a minimal promoter. In another preferred embodiment, the at least one inducible element is a Hght-indurible rbcS promoter fragment with a chloroplast-targeting transit peptide.
[0024] Another aspect of the present invention further relates to a method of
increasing tolerance of monocot plant to low temperature, salt, or water stress conditions by increasing the levels of an enzyme for trehalose biosynthesis in the monocot plant
[0025] The present invention also relates to a transgenic monocot plant
transformed with a plasmid that confers low temperature, salt, and water stress
tolerance to the monocot plant where the plasmid comprises a first nucleic acid
encoding trehalose-6-phosphate synthase, a first inducible promoter, the promoter
located 5' to the first nucleic acid and controlling expression of the first nucleic acid,
and a first termination sequence located 3' to the first nucleic add.
[0026] Monocot plants, which can be transformed in accordance with the
subject invention, are members of the family Gramineae (also known as Poaceae), and include rice (genus Oryza), wheat, maize (com), barley, oat, rye, millet, and sorghumu Preferably, the cereal is rice, wheat, or com, and most preferably the cereal is rice. Many species of cereals can be transformed, and, within each species, there aic numerous subspecies and varieties that can be transformed. For example, within the rice species is subspecies Indica rice (Oryza sativa ssp. Indica), which includes the varieties BR36, IR64, IR72, Pokkali, NonaBokra, KDML105, Suponburi 60,

Suponburi 90, Basmati 385, and Puss Basmaii 1. Anotherrice subspecies is Japonica,
which includes Nipponbare, Kenfeng, and Tainung 67. Examples of suitable maize
varieties include Al 88, B73, VA22, L6, L9, Kl, 509, 5922,482,HNP, and IGES.
Examples of suitable wheat varieties include Pavon, Bob White, Hi-Line, Anza,
Chris, Coker 983, FLA301, FLA302, Fremont, and Hunter.
[0027) Having identified the plant of interest, plant cells suitable for
transformation include mature embryos, immature embryos, calli, suspension cells, and protoplasts. It is particularly preferred to use mature embryos and immature embryos.
[0028] In a preferred embodiment the at least one ABRC unit is from a barley
HVA22 gene or a barley HVA1 gene. The sequence for the at least one ABRC unit from a barley HVA22 gene, a 49-bp ABA-responsive complex, is set forth in Shen et al., "Functional Dissection of an Abscisic Acid (ABA)-Inducible Gene Reveals Two Independent ABA-Responsive Complexes Each Containing a G-Box and Novel Acting Element," The Plant Cell, 7:295-307 (1995), which is hereby incorporated by reference in its entirety. The sequence for the ABRC unit from a bailey HVA1 gene is set forth in Shen et al., "Modular Nature of Abscisic Add (ABA) Response Complexes: Composite Promoter Units that are Necessary and Sufficient for Induction of Gene Expression in Barley," The Plant Cell, 8:1107-1119 (1996).. In a most preferred embodiment, up to four of the ABRC units are operably linked together in the expression cassette.
[0029] Suitable nucleic acids that increase tolerance to low temperature stress,
salt stress, and water stress in monocot plants ace genes the regulate the expression of stress-responsive genes and genes that encode enzymes involved in trehalose biosynthesis. Enzymes that encode trehalose biosynthesis can be isolated from a large number of organisms including bacteria, yeast, and invertebrates (see generally, Crowe et aL, "Anhydrobiosis," Annu Rev. Physiol, 54:579-599 (1992), which is hereby incorporated by reference in its entirety). In a preferred embodiment, a nucleic acid that encodes an enzyme involved in trehalose biosynthesis is a DNA encoding trehalose-6-phosphate synthase. Preferably, the TPSl gene from yeast encodes the trehalose-6-phosphate synthase {for comparison of different yeast TP$l genes, see Kwon et aL, "Cloning and Characterization of Genes Encoding Trthalose-6-

phosphate Synthase (TPS1) and Trehalose-6-phosphatse Phosphatase (IPS2) from Zygosaccharomyces rouxii" FEMS Yeast Res., 3:433-440 (2003), which is herfifoy incorporated by reference in its entirety). More preferably, the otsA gene from Escherichia coli encodes the trdialose-^-phosphate synthase. In another preferred embodiment, a nucleic acid that encodes an enzyme involved in trehalose biosynthesis is a DNA encoding trehalose-6-phosphate phosphatase. Preferably, the TPS2 gene from yeast encodes the trehalose-6-phosphate phosphatase (for comparison of different yeast XPS2 genes, see Kwon et aL, "Cloning and Characterization of Genes Encoding Trehalose-6-phosphate Synthase (IPS1) and Trehalose-6-phosphate Phosphatase (TPS2) from Zygosaccharomyces rowdi", FEMS Yeast Res., 3:433-440 (2003), which is hereby incorporated by reference in its entirety). More preferably, the otsB gene from Escherichia coli encodes the trehalose-6-phosphate phosphatase. In a more preferred embodiment both the trehaloEe-6-phosphate synthase (otsA) and trehalose-6-phosphate phosphatase {otsB) are coexpressed in the monocot plant In a most preferred embodiment, the lrehalose-6-phosphate synthase (otsA) and trehalose-6-phosphate phosphatase (otsB) are expressed as a fusion protein in the moncot plant The sequence of the otsA and otsB genes can be found in Kaasen et al., "Analysis of the oisBA Operon for Osmoregulatory Trehalose Synthesis m Escherichia coli and Homology of the OtsA and OtsB Proteins to the Yeast Trchalose-6-phosphate synthase/phosphatase complex,1" Gene, 145:9-15 (1994), which is hereby incorporated by reference in its entirety.
[00303 Suitable minimal promoters include Actl of rice, rbcS of rice, a
shortened α-amylase promoter of barley or rice, a shortened maize ubiquitin promoter, or a shortened CaMV 35S promoter.
[0031] In a preferred embodiment, the minimal promoter is an inducible
promoter.
[0032] In a more preferred embodiment the minimal promoter is the light
inducible promoter ibcS of rice,
[0033] Most preferably, the minimal promoter is the stress inducible minimal
Actl promoter of rice and the sequence can be found in Su-et al, "Dehydration Stress* regulate Transgene Expression in Stably Trabformed Rice Plants," Pl,ant physcial
13-922 (1998), which is hereby incorporated by reference in its entirety.

[0034] In a preferred embodiment, the expression cassette comprising the
inducible promoter and the nucleic add encoding an enzyme for trehalose biosynthesis increases tolerance to low temperature stress, salt stress, and water stress in monocot plants.
[0035] These moncot plant cells are transformed wife a nucleic acid, which
could be RNA or DNA and which is preferably cDNA, encoding a molecule that
increases tolerance to low temperature stress, salt stress, and water stress in monocot
plants. The nucleic acid can be biologically isolated or synthetic and encodes for an
enzyme for trehalose biosynthesis. la the following Examples, a key enzyme for
biosynthesis, trebalose-6-phosphate synthase (IPS), is encoded by the otsA gene of R
coli. In the following Examples, a second key enzyme for biosynthesis, trehalose-6-
phosphate phosphatase (TPP), is encoded by the ots E gene of E, coll
[0036] Transformation of plant cells can be accomplished by using a plasmid.
The plasmid is used to introduce the nucleic add that increases tolerance to salt stress
and drought stress in plants into the plant cell. Accordingly, a plasmid preferably
includes a DNA molecule that increases tolerance to salt stress and drought stress in
plants inserted into a unique restriction endomiclease cleavage site. Heterologous
DNA, as used herein, refers to DNA not normally present in the particular host cell
transformed by the plasmid. DNA is inserted into the vector using standard cloning
procedures readily known in the ait This generally involves the use of restriction
enzymes and DNA ligases, as described by Sambrook et aL, Molecular Cloning; A
Laboratory Manual, 2d edition, Cold Spring Harbor Laboratory Press, Cold Spring
Harbor, New York, which is hereby incorporated by reference in its entirety. The
resulting plasmid, which includes a nucleic acid that, increases tolerance to salt stress
and drought stress in plants can then be used to transform a host cell, such as an
Agrobacterium and/or a plant cell. (See generally, Plant Molecular Biology Manual,
2d Edition, Gelvin et al., Eds,, Kluwer Academic Press, Dordrecht, Netherlands
(1994), which is hereby incorporated by reference in its entirety).
[00371 For plant transformation, the plasmid preferably also includes a
selectable marker for plant transformation. Commonly used plant selectable markers include the hygromycin phosphotransferase (hpt) gene, the phosphinothricin acetyl transferase gene (bar), the 5-enolpyrovylshndmate-3-phosphatesynthase-gene

(EPSPS), neomycin 3'-0-phosphotransferase gene (npt H), or acetolactate synthase
gene (ALS), Monnation on these selectable markers can be found in "Markers for
Plant Gene Transfer" in Transgenic Plants, Knng et aL, Eds., Vol. 1, pp. 89-123,
Academic Press, NY (1993), which is hereby incorporated by reference in its entirety.
ID a preferred embodiment, the plasmid includes the phosphmothricin acetyl
transferase gene (bar) in a selection cassette as a selectable marker lor plant
transformation under control of the cauliflower mosaic vims 35S promoter.
[0038] hi a preferred embodiment, the plasmid is designated pSB109-TPSP or
pSB-RTSP, each of which includes an otsA and ots B fusion gene.
[0039] For plant transformation, the plasmid also preferably includes a nucleic
acid molecule encoding a 3' terminator such as that from the 3* non-coding region of
genes encoding a proteinase inhibitor, actin 1, or nopaline synthase (nos). In a
preferred embodiment, the plasmid includes a nucleic add molecule encoding the 3'
non-coding region of the proteinase inhibitor II gene (pinII) as a 3' terminator for the
expression cassette comprising the inducible promoter and the nucleic acid encoding
an enzyme for trehalose biosynthesis. Preferably, the plasmid includes a nucleic acid
molecule encoding 3' non-coding region of the nopaline synthase gene (nos) as a 3'
terminator for the selection cassette for plant transformation
[0040] Other suitable plasmids for use in the subject invention can be
constructed. For example, genes encoding a nucleic acid that increases trehalose biosynthesis and that increases tolerance to low temperature stress, salt stress, and water stress in monocot plants other than the otsA gene or the otsB gene of E. coli could be ligated into the parent plasmid SB109-TPSP or SB-RTSP after use of restriction enzymes to remove the otsA gene, the ots B-gene, or the ots AlotsB fusion gene. Other minimal promoters could replace the rice actin 1 gene promoter present in plasmid SB109-TPSP or the rbcS gene promoter in plasmid SB-RTSP- Alternatively, other plasmids in general containing genes encoding a nucleic acid that increases trehalose biosynthesis and that increases tolerance to low temperature stress, salt stress, and water stress in monocot plants under the control of a suitable minimal promoter, with suitable selectable markers, can be readily constructed using techniques well known in the art

[0041] Having identified the plasmid, one technique of transforming monocot
plant cells with a nucleic acid that increases tolerance to low temperature stress, salt stress, and water stress in plants is by contacting the plant cell with an inoculum of an Agrobacterium bacteria transformed with the plasmid comprising the nucleic acid that increases tolerance to low temperature stress, salt stress, and water stress in monocot plants. Generally, this procedure involves inoculating the plant cells with a suspension of the transformed bacteria and incubating the cells for 48 to 72 hours on regeneration medium without antibiotics at 25-28°C.
[0042] Bacteria from the genus Agrobacterium can be utilized to transform
plant cells. Suitable species include Agrobacterium tumefaeiens and Agrobacterium
rhizogenes. Agrobacterium tumefaciens (e.g., strains LBA4404 or EHA105) is
particularly useful due to its well-known ability to transform plants.
[0043] In inoculating the cells of plants with Agrobacterium according to the
subject invention, the bacteria must be transformed with a vector, whidi indudes a gene encoding for an enzyme for trehalose biosynthesis.
[0044] Plasmids, suitable for incorporation mAgrobacterium, whidi indude a
nucleic acid that increases tolerance to low temperature stress, sail stress, and water
stress in plants, contain an origin of replication for replication in the bacterium
Escherichia co% an origin of replication for replication in the bacterium
Agrobacterium tumefaciens, T-DNA right border sequences for transfer of genes to
plants, and marker genes for selection of transformed plant-cells. Particularly
preferred is the vector pBI121, whidi contains a low-copy RK2 origin of replication,
the neomycin phosphotransferase (nptH) marker gene with a nopaline synthase (NOS)
promoter and a NOS 3' polyadenylation signal. T-DNA plasmid vector pBI121 is
available fee Clontech Laboratories, 4030 Fabian Way, Palo Alto, California 94303.
A nucleic add that increases tolerance to low temperature stress, salt stress, and water
stress in monocot plants is inserted into die vector to replace the beta-glucuronidase
(GUS) gene.
[0045] Typically, Agrobacterium spp. are transformed with a plasmid by direct
uptake of plasmid DNA after chemical and beat treatment, as described by Holsters ct al, "Transaction and Transformation of Agrobacterium tumefaciens, "Mol Gen. Genet, 163:18 1-187 (1978), whidi is hereby incorporated by reference in its entirety;

by direct uptake of DNA after electroporaiion, as described by Shea et aL, Efficient Transformation ofAgrobacterium spp, by High Voltage Electroporation,,, Nucleic Acids Research, 17: 8385 (1989), which is hereby incorporated by reference in its entirety; by triparental conjugational transfer of plasmids from Escherichia coli to Agrobacterium mediated by a Trarf help strain as described by Ditta et aL, "Broad Host Range DNA Cloning System for Gram-negative Bacteria: Construction of a Gene Bank of Rhizobium meliloti, Proc. Natl Acad. ScL USA, 77:7347-7351 (1981)s which is hereby incorporated, by reference in its entirety; or by direct conjugation transfer from Escherichia coli to Agrobacterium as described by Simon et aL, "A Broad Host Range Mobilization System for in vivo Genetic Engineering: Transposon Mutagenesis in Gram-Negative Bacteria," Biotechnology, 1:784-791 (1982), which is hereby incoiporated by reference in its entirety.
[0046] Another method for introduction of a containing nucleic acid encoding
an enzyme for trehalose biosynthesis into a plant cell is by transformation of the plant
cell nucleus, such as by particle bombardment. As used throughout this application,
particle bombardment (also known as Holistic transformation) of the host cell can be
accomplished in one of several-ways. The first involves propelling inert or
biologically active particles at cells. This technique is disclosed in U,S. Patent Nos.
4,945,050,5,036,006, and 5,100,792, all to Sauford et aL, which are benfcy
incorporated by reference in its entirety. Generally, this procedure involves propelling
inert or biologically active particles at the cells under conditions effective to penetrate
the outer surface of the cell and to be incorporated within the interior thereol When
inert particles are utilized, the plasmid can be introduced into the cell by coating the
particles with the plasmid containing the heterologous DNA, Alternatively, fee target
cell can be surrounded by die plasmid so that the plasmid is carried into the cell by the
wake of the particle. Biologically active particles (e.g., dried bacterial cells containing
the plasmid and heterologous DNA) can also be propelled into plant cells.
[0047] A further method for introduction of the plasmid into a plant cell is by
transformation of plant cell protoplasts (stable or transient). Plant protoplasts are enclosed only by a plasma membrane and will therefore take up macromolecules like heterologous DNA. These engineered protoplasts can be capable of regenerating whole plants. Suitable methods for introducing heterologous DNA into plant cell

protoplasts include electroporation and polyethylene glycol (PEG) transformation As
used throughout this application, dectroporation is a transformation method in which,
generally, a high concentration of DNA (containing heterologous DNA) is added to a
suspension of host cell protoplasts and the mixture shocked with an electrical field of
200 to 600 V/crru Following electroporation, transformed cells are identified by
growth on appropriate medium containing a selective agent
[0048] As used throughout this application, transformation encompasses stable
transformation in which the plasmid is integrated into the plant chromosomes.
[0049] In the Examples which follow, rice has been transformed using the
Agrobacterium method as described in Hiei et aL, "Efficient Transformation of Rice
(Oryza sativa L.) Mediated by Agrobaeteritm and Sequence Analysis of the
Boundaries of the T-DNA," The Plant Journal, 6:271 -282 (1994), which is hereby
incorporated by reference in its entirety- biolistic transformation. Other methods of
transformation have also been used to successfully transform rice plants, including the
protoplast method (for a review, see Cab et al, "Regeneration of Herbicide Resistant
Transgenic Rice Plants Following Microprqjectile-Mediated Transformation of
Suspension Culture Cells," Plant CellRep., 11:586-591 (1992), which is hereby
incorporated by reference in its entirely), and the biolistic transformation method
(disclosed in U.S. Patent Nos. 4,945,050,5,036,006, and 5,100,792, all to Sanford et
aL, which are hereby incorporated by reference in its entirety). Biolistic
transformation has been used successfully to transform wheat (for a review, see
Weeks et aL, "Rapid Production of Multiple Independent Lines of Fertile Transgenic
Wheat (Triticum aestivum)," Plant Physiol, 102:1077-1084 (1993), which is hereby
incorporated by reference in its entirety). Biolistic transformation has also been vsed
to successfully transform maize (for a review, see Macfeey et al, "Transgenic Maize,
In Transgenic Plants, Rung et aL, Eds., vol. 2, pp- 21-33 (1993), whick is hereby
incorporated by reference in its entirety) and wheat (see Patent No. 5,405,765 to Vasil
et al., which is hereby incorporated by reference in its entirety),
[0050] Once a monocot plant cell or protoplast is transformed in accordance
with the present invention, it is regenerated to form a transgenic monocot plant Generally, regeneration is accomplished by culturing transformed cells or protoplasts on medium containing the appropriate growth regulators and nutrients to allow-for the

initiation of shoot mexistems. Appropriate antibiotics are added to the regeneration
medium to inhibit the growth of Agrobacterium or other contaminants and to select
for the development of transformed cells or protoplasts. Following shoot initiation,
shoots are allowed to develop in tissue culture and are screened for marker gene
activity.
[0051] In suitable transformation methods, the monocot plant cell to be
transformed can be in vitro or in vivo, ie. the monocot plant cell can be located in a
monocot plant
[0052] The present invention also relates to a transgenic monocot plant
transformed with a nucleic acid that increases tolerance to low temperature stress, salt
stress, and water stress operably linked to an inducible promoter.
[0053] The invention also provides seed produced by the transgenic monocot
plant. The invention is also directed to seed, which upon germination, produces the
transgenic monocot plant
[0054] Also encompassed by the present invention are transgenic monocot
plants transformed with fragments of the nucleic acids that increase tolerance to low
temperature stress, salt stress, and water stress of the present invention. Suitable
fragments capable of conferring low temperature stress, salt stress or water stress
tolerance to monocot plants can be constructed by using appropriate restriction sites.
A fragment refers to a continuous portion of the nucleic add that increases tolerance
to salt stress and drought stress that is less than the entire molecule,
[0055] Non-essential nucleotides could be placed at the 5' and/or 3f ends of the
fragments (or the foil length nucleic acids that increase tolerance to salt stress and
drought stress) without affecting the functional properties of the fragment or molecule
(Ie. in increasing water stress or salt stress tolerance). For example, the nucleic add
that increases tolerance to low temperature stress, salt stress, and water stress may be
conjugated to a signal (or leader) sequence at the N-tenninal end-(for example) of the
nucleic acid that increases tolerance to low temperature stress, salt stress, and water
stress which co-translationally or post-ttanslationally directs transfer of the nucleic
add that increases tolerance to low temperature stress, salt stress, and water steess.
The nudeotide sequence may also be altered so that the nndeic add that increases

tolerance to low temperature stress, salt stress, and water stress is conjugated to a
linker or other sequence for ease of synthesis, -purification, or identification.
[0056] The transgenic cereal plant cell or protoplast or plant can also be
transformed with a nucleic acid encoding a selectable marker, such as the for gene, to allow for detection of transfoimants9 and with a nucleic add encoding the cauliflower mosaic vims 35S promoter to control expression of the bar gene. Other selectable maricers include genes encoding EPSPS, npffi, or ALS. Other promoters include those from genes encoding actin 1, rbcS, ubiquitin, and PINU These additional nucleic add sequences can also be prdvided by the plasmid encoding a gene that imparts tolerance to low temperature stress, salt stress, and water stress and its promoter. Where appropriate, the various nucleic acids could also be provided by transformation with multiple plasmids.
[00571 While the nucleic acid that increases tolerance to low temperature
stress, salt stress, and water stress referred to herein encodes, for example, a gene that imparts tolerance to low temperature stress, salt stress, and water stress, nucleotide identity to previously sequenced to low temperature stress, salt stress, and water stress genes is not required. As should be readily apparent to those skilled in the art, various nucleotide substitutions are possible which are silent mutations (i.e. the amino acid encoded by the particular codon does not change). It is also possible to substitute a. nucleotide which alters the amino acid encoded by a particular codon, where the amino acid substituted is a conservative substitution (i.e. amino add "homology" is conserved). It is also possible to have minor nucleotide and/or amino acid additions, deletions, and/or substitutions in the low temperature stress, salt stress, and water stress gene nucleotide and/or amino acid sequences which have minimal influence on the properties, secondary structure, and hydrophilic/hydrophobic nature of the encoded low temperature stress, salt stress, and water stress -gene. These variants are encompassed by the present invention.

EXAMPLES
Example 1 - Plasmid Construction for Rice Transformation
[0058J Two binary plasmids, pSB109-TPSP andpSB-RTSP, each containing a
TPSP fusion gene (Seo et aL, "Characterization of a Bifunctional Enzyme Fusion of Trehalose-6-Phospbate Synthetase and Trehalose-6-Phosphatc Phosphatase of Escherichia coli"Appl Environ. Microbiol, 66:2484-2490 (2000), which is hereby incorporated by reference in its entirety), were constructed in 1he pSBl 1 vector (Komari et aL, "Vectors Carrying Two Separate T-DNAs for Co-Transformation of Higher Plants Mediated by Agrobacterium tumefeciens and Segregation of Transfoxmants Free from Selection Markers," .palnt J., 10:165-174 (1996), which is hereby incorporated by reference in its entirety) by using standard cloning and plasmid manipulation procedures. The components of the plasmid within the T-DNA region and the selected restriction enzyme sites are shown in Fig. 1 A, B7 and C. The expression cassette in pSB109-TPSP consists of an abscisic add (ABA)-indudble promoter (Su et aL, 'Dehydration-Stress-Regulated Transgene Expression in Stably Transformed Rice Plants," Flora Physiol, 117:913- 922 (1998), which is hereby incorporated by reference in its entirety) that contains fonr tandem copies of ABA-inducible element ABRC1 (0.18 kb) coupled -with a minimal rice actin 1 promoter (0.18 kb) and an HVA22 intion (0,24kb). It is linked to the ZPSP coding region (22 kb), which was constructed by fusing the otsA and otsB genes from E. colt afler fhe stop codon of the otsA gene had been removed by PCR (Seo et aL, "Characterization of a Biibnctional Enzyme Fusion of Trebalose-6-Phosphate Synthetase and Trehalose-6-Phosphaie Phosphatase of Escherichia colifAppl. Environ. Microbiol, 66:2484-2490 (2000), which is hereby incorporated by reference in its entirety) and then ligated to the potato protease inhibitor H gene (pinII)3' noncoding sequence (1.0 kb). The selection cassette includes the cauliflower mosaic virus 35S promoter (0.74 kb), phosphinothricin acetyitransferase gene (bar, 039 kb), and the nopaline synthase gene 3' noncoding sequence (Nos 3', 0J28 kb). In pSB-RTSP, a 1-3-kb fragment of the rice rbcS promoter (Kyoziika et air, "1ight-ilegulated and Cell-Specific Expression of Tomato ibcS-gusA and Rice rbcS-gusA Fusion

Genes in Transgenic Rice/3 Plant Physiol, 102:991-1000 (1993), which is hereby incorporated by reference in its entirety) with a chloroplast'taigeting transit peptide (0.16 Kb) is linked to the TPSP coding regicm; the remaking components are similar to those in pSBl 09-TPSP. During the cloning and ligation of an =3.7-fcb DNA fragment containing the rbcS promoter/transit peptide and TPSP fusion gene into the plasmid pSB-RTSP, three additional restriction sites (Sack Sail, and HmSIII) were added between TPSP and 31 pin K Both the plasmids Example 2- Production of Transgenic Rice Plants
[0059) Mature seeds of indica rice variety PB-1 were defcusfced and sterilized
in 70% (vol/vol) ethanol for 2-3 min and then transferred into 50% (vol/vol) Clorox solution for 40 min with gentle shaking. The seeds were rinsed several times with sterile water. The sterilized PB-1 seeds were then plated for callus induction on Murashige and Skoog (MS) medium (Sigma) supplemented with 3.0 mg/hter 2,4-dichlorophenoxyaceticacid (2,4-D)/0.2 mg/liter 6-benzylaminopurine (BAP)/300 mg/liter casein hydrolysate (CB)/30 g/liter maltose/3.0 g/liter phytagel,pH 5.8 (MSC1) and grown for 21 days at 25°C in the dark. Three weeks after callus induction from the scutellar region of thence embryo, 150 embryogemc calli were immersed in A. tumefacients suspension for 10 mn. Infected calli were cocultivated in

MSClmedium supplemented with 10 g/liter glucose/100 μM acetosyringone, pH 5.2 (MSCC). After 3 days of cocultivation, calli were washed with sterile water containing 250 mg/liter cefotaxime and blotted on filter paper. The calli were immediately plated on a selectionmedium, MSC1 medium, supplemented with 6 mg/liter bialaphos and 250 mg/liter cefotaxime, pH 5.8 (MSS), and incubated at 25°C in the dark for 2-3 weeks. The microcaDi that had proliferated after the initial selection were further subcultured for two selection cycles on fresh MSS medium every 2 weeks. The actively dividing bialaphos-reastant callii were plated cm MS plant regeneration medium containing 2.5 mg/lite BAP/1.0 mg/liter kinetin/0.5 mg/liter naphtbaleneacetic acid (NAA)/300 mg/liter CH/30 g/liter maltose/4 mg/liter bialaphos/250 mg/liter cefotaximc/2.0 g/liter phytagel, pH 5.8 (MSPR) and grown at 25°C for a 10-h Eght/14~h daric photoperiod for 3-4 weeks. The regenerated plantiiets were acclimatized hydroponically in Yoshida nutrient solution (Yoshida et aL, Laboratory Manual for Physiological Studies ofBic^ International Rice Research Institute, Manila, Philippines, pp. 61-66 (1976), which is hereby incorporated by reference in its entirety), for 10 days. Later on, putative primary transformants (To generation) were transferred to pots and tested for Basta-herbicide resistance (Roy and Wo, "Argmine Decarboxylase Transgene Expression and Analysis of Environmental Stress Tolerance in Transgenic Rice/' Plant ScL 160:869-875 (2001), which is hereby incorporated by reference in its entirety); the transgenic plants were grown to maturity in a greenhouse for further analysis.
Example 3 - DNA Blot Hybridization Analysis of Transgenic Rice Plants
[0060] Leaves from nontransformed control (NTC) plant, and representative
(To) transformants of nine A-lines (ABA-indudble promoter) sad five R-lines (ibcS promoter) that were transformed with theplasmid pSB109-TPSP andpSB-RTSP, respectively, were ground in liquid nitrogen by using a mortar and pestle. Rice genomic DNA was isolated by the guanidine-detergent lysis method by using DNAzolES (Molecular Research Center, Cincinnati) following the manufecturer's instructions. Five micrograms of the genomic DNA was digested overnight with HindIII restriction enzyme, fractionated through 0.8% agarose gel, alkali-transferred

onto Hybond-N+ nylon membrane (Amersham Pharmacia), and hybridized with an a-^P-labeled 2,2-fcb TPSP fusion gene (Seo et aL, "Chaiacterization of a Biftnctional Enzyme Fusion of Tiehalose-6-Phosphate Synthetase and Trehalose-6-Phosphafce Phosphatase of Escherichia ooUTAppl Environ. Microbiol, 662484-2490 (2000), which is hereby incorporated by reference in its entirety) as the probe, DNA probe preparation, hybridization, and washing of the membrane were performed as described (Roy and Wu, "Arguoine Decarboxylase Transgene Expression and Analysis of Environmental Slxess Tolerance in Transgenic Rice,** Plant So. 160:869-875 (2001), which is hereby incorporated by reference in its entirety). The a-32?-labeled membrane was exposed onto autoradiogram.
Example 4 - Detecting Trehalose and Soluble Carbohydrates
[0061] Soluble carbohydrates were extracted as described (Ooddijn et aL?
"Inhibition of Trehalase Activity Enhances Trehalose Accumulation in Transgenic Plants," PlantPhysiol, 113:181-190 (1997), which is hereby incorportted by reference in its entirety). Extracts from 0.5 g of homogenized fresh leaf tissue were centrifuged (10 inin at 3,220 x g); supematants were passed through ion-exchange columns consisting of 1 ml of Ambedite 1R-68 (acetate form) layered on 1 ml of Dowex SOW (hydrogen form) to remove charged compounds. After lyophilkation, samples were dissolved in HPLC-grade water and subjected to high-performance anion exchange chromatography with pulsed amperometric detection by using a Dionex DX-500 series chramarograph equipped with a Carbopac PA-1 analytical column and a Carbopac PA-1 guard column (Dionex), Carbohydrates were duted at a flow rate of 1,0 ml per min at 1,400 psi with lOOmM NaOH for 34 min. Major soluble carbohydrates present were quantified by using authentic standard sugars (Sigma). The identity of trehalose in the plant extracts was confirmed by incubating samples wifhporcine-bdney-derived trehalase enzyme(Sigma).
ExampleS- Determination of Salt Stress Tolerance and Plant Mineral Nutrients
[006] Tenseedlings for each T4-eaeration transgenic 1ine(R2 R38,R80,
A05, A07, and A27) and NTC were grown hydroponfcally (with modest aeration) in

Yoshida nutrient solution (Yoshida et al., Laboratory Manual for Physiological Studies of Rice, International Rice Research Institute, Manila, Philippines, pp. 61-66 (1976), which is hereby incorporated by reference in its entirety) in a growth chamber at 25 ± 3°C for a 10-h light/14-h daric photqperiod (photon flux density of 280 μmol photons per m/s) and with relative humidity of 50-60%. After 5 weeks, 50% of fee seedlings were subjected to 100 mM Nad stress (conductivity of 10-12 dS/m). Nutrient solutions were replaced every week. After 4 weeks of continuous salt stress, shoot and root samples were separately harvested for fresh and dry weight determination. For mineral nutrient analysis, 150 mg of ground dry matter was digested in concentrated HNO3 ovemightat 120°C Samples then were dissolved in HN03:HC104 (1:1, vol/vol) at 220°C, resuspended in 5% (vol/vol) HNOs, and analyzed for elemental composition of sodium (Na*), potassium (K4), calcium (Ca2+), and iron (Fe) by means of simultaneous inductively coupled argon-plasma emission spectrometry (ICP trace analyzer, Plant, Soil, and Nutrition Laboratory, U.S. Department of Agriculture-Agriculture Research
i Service, Cornell University, Ithaca, NY).
Example 6 - Determination of Drought and Low-Temperature Stress Tolerance
[0063] Seedlings from six independent T4 transgenic lines and nantransfonned
line were grown individually in 10-cm x 10-cm pots irrigated with Yoshida nutrient solution for 5 weeks before performing the drought- or low-temperature stress experiment Drought stress (water deficit) was conducted by first withholding imgationfor3 days to allow the soil in fee pot to dry- Then, the first drought cycle of 100 h was initiated, followed by rewatering for 2 days. The drought-stress cycle was repeated for another 100 h, and the plants were allowed to recover by watering every day for 3 weeks. Low-temperature stress was conducted on five-week-old seedHngs by exposing them to 10°C for 72 h under a 10-h light/14-h daik photoperiod (photon flux density of 280 μmol photons perm per s) and a relative humidity of 50-60%; fee seedlings were then allowed to recover under normal-growth conditions at 25 + 3°C

Example 7 - Protein Extraction and Immunoblotting
[0064] Proteins were extracted from .0.2 g of homogenized fresh leaf tissue in
protein extraction buffer (20 mM Tris-HCl, pH 8.0/10 mM EDTA/30 mM NaCl/2 mM phenylmethane sulfonyl fluoride for 1 h at 4°C). The bomogenate was clarified by sentriiugation at 12,000 x g for 15 min at 4°C. The procedure for immmioblotting was essentially the same as described (Xu et aL, 'Expression of a Late Embtyogenesis Abundant Protein Gene, HVA1, from Barley Confers Tolerance to Water Deficit and Salt Stress in Transgenic Rice/1 Plant Physiol 110:249-257 (1996), which is hereby ncoiporated by reference in its entirety). The anti-TPSP protein polyclonal antibody vas used at a 1:1,500 dilution for Western blot analysis, using an alkaline phosphatase :olor reaction for detection of the protein, as per the manufacturer's instruction (Bio-lad).
Example S- Chlorophyll Fluorescence Parameters
[0065] Fv/Fm and psn were measured by using a pulse amplitude modulated
fluorometer (FMS2, Hansatech Instruments, Pentney King's Lynn, UJL) to estimate photo-oxidative damage to the Photosystem H (PS H) reaction center and the quantum efficiency of PS Uphotochemistry under ambient light conditions, respectively, as described (Saijo et al., "Over-Expression of a Single Ca2-HDependent Protein Kinase Confers Both Cold and Salt/Drougxt Tolerance on Rice Plants/4 Plant X 23:319-327 (2000), which is hereby incorporated by reference in its entirety). Measurements were made on the youngest, fully expanded leaves. Measurements of psn were first determined under ambient light the same leaves were then dark-adapted for 10 min before measurement of Fv/Pm.
Example 9 — Transgenic Rice Plants with Enhanced Trehalose Levels Are Phenotypically Normal and Fertile
[0066] Twoplasmid constructs, pSB109-TPSP (Fig. 1 A,c) and pSB-RTSP
(Fig. 1B, C), each containing the TPSP fusion gene, were introducedinto indica rice cells of PB-1 by Agrobacterwm-mediated gene transfer (HIE et at, 'Efficient
Transfonnation of Rice(Orysa sativa L.) Mediated by Agrobacterium and Sequence

Analysis of the Boundaries of the T-DNA," Plant X9 6271-282 (1994), which is hereby incoiporated by reference in its entirety). In the plasmid construct pSB109-TPSP, an ABA and stress-indudble promoter (Su et aL, TDehydration-Stiess-Regulated Transgene Expression in Stably Transformed Rice Plants," Plant Physiol, 117:913- 922 (1998), which is hereby incorporated by reference in its entirety) drives the fusion gene for cytosolic expression. In the other plasmid, pSB-RTSP, the light-regulated promoter (Kyozuka et al., Tight-Regulated and Cell-Specific Expression of Tomato rbcS-gusA and Rice rbcS-gusA Fusion Genes in Transgenic Rice,"plant Physiol, 102:991-1000 (1993)? which is hereby incorporated by reference in its entirety) of the Rubisco small submit geoe, rbcS, from Oryza safiva with a transit peptide drives the fusion gene for chloropIast targeting in the leaf mesopbyll cells. A large number of putative transgenic PB-1 plants (T0 generation) were regenerated (Table 1); these plants included 28 A-lines (ABA-indudble promoter) and 76 R-lines. (fbcS promoter).
Table 1. Efficiency of rice transformation using Agrcbacterium tumefaciens strain LBA 4404 (pSBl) containing the TPSP fusion gene in plasmids pSB109-TPSP and pSB-RTSP

Integration of the TPSP transgene was confirmed by DNA-blot hybridization analysis (Fig. 1D and E). Based on the T~DNA junction fragment analysis, =40% of the

transgenic plants transformed with either of the plasmids harbor a single copy, and 35' 45% of plants harbor two or three copies of the transgene.
[0067] Most of the 90 independent primary transformants (To) that contained a
low copy number of the transgene showed a normal phenotype and were completely fertile. In contrast to previous reports that used constitutive promoters driving individual TPS and/or TPP genes, the use of stress-inducible or tissue-specific promoters in this work appears to minimize the negative effects of the transgene on plant growth. The To plants were self-pollinated to obtain segregating Ti progeny for genetic and HPLC analysis. Forty-five transgenic lines showed a segregation pattern of 3:1 for the basta-herbicide resistance marker gene, HPLC analysis of leaf extracts showed that transgenic lines had a trehalose content that was between three times and eight times that of the nontransgenic plants (17 ± 5 jig of trehalose per g of fresh weight)- The identity of trehalose in the plant tissue extracts was confirmed by incubating samples in porcine trehalase followed by chromatographic analysis of the monosaccharide products (Figure 6), Physiological experiments were conducted for abiotic stress tolerance on homozygous plants through the T4 generation, because gene silencing has been reported to occur in the T3 generation, even though T2 and Ti generation plants were not silenced (Iyer et aL, Transgene Silencing in Monocots," Plant Mol Biol, 43:323-346 (2000), which is hereby incorporated by reference in its entirety). The results JSnom many independent transgenic lines were consistent for salt-and drought-stress tolerance in each generation, except in few transgenic lines which had multiple copies of the transgene.
Example 10- Transgenic Rice Plants Are Salt Tolerant and Maintain Balanced Mineral Nutrition
[0068] The T4 transgenic plants with either one or two copies of the transgene
showed markedly enhanced salt tolerance during and subsequent to 4 weeks of 100 mM NaCl treatment under hydroponic growth conditions. Six independent transgenic plant lines (three A-lines and three R-iines) were analyzed in detail. For clarity of presentation, results from two representative transgenic lines (R80 and A05) are shown (Figure 2); results for the other four lines were very similar to the two lines presented After prolonged exposure to salt stress, almost all of the transgenic plants

survived and displayed vigorous root and shoot growth. In contrast, all of the
nontransfonned stressed (NTS) plants were either dead ornearly dead because of
severe salt damage to the leaves and concomitant loss of chlorophyll Transgenic
plants developed longer and itrickerioots than NTS plants after salt stress (Figure 2
A). Salt stress severely inhibited the growth of shoot and roots ofNTS plants, as
indicated by their lower dry weights compared with NTC plants. Shoot and root dry
weights of both the transgenic lines (Figure 2 B) approached those of NTC plants,
and, after removal of salt stress, the transgenic plants were able to grow, flower, and
set normal viable seeds. To determine whether the TPSP gene product was present in
the salt-stressed .plants, total protein was isolated from the leaf samples for Western
blot analysis. Immnnoblot analysis using polyclonal antibodies raised against the
fusion protein showed the presence of a protein with the expected apparent molecular
mass of 88 fcDa only in the transgenic plants (Figure 2 Q,
[0069] To assess how trehalose accumulation in transgenic rice affected plant
mineral nutrition during salt stress, shoot and root mineral content for the six independent transgenic lines and two nontransgenie lines were determined by using inductively coupled plasma emission spectrometry (Table 2).
Table 2. Plant mineral nutrient content (sodium, potassium, calcium, and iron ions) in shoots and roots of transgenic lines (R22, R38, R80 A05, A07, and A27) and nontransfonned control lines with or without salt stress
#




The ionic concentration is presented as mgfg shoot or roots dry weight Values are tiwe
means ± SD (n - 5),
After continuous salt stress (100 mM NaQ) for 4 weeks, NTS plants showed a very large increase in Na+ content in both shoots and roots compared with NTC5 whereas the increase in the shoots of all of-die transgenic plants was much smaller (Figure 2 D). The Na+ content of transgenic plant shoots was only 30-35% of the NTS plants after salt stress. The observed differences in shoot Na+ content between transgenic and NTS plants could be caused in part by a growth dilution because of the much fester growth rate of the transgenic plants under salt stress. Alternatively, trehalosemigbt have played a direct or indirect role in maintaining ion selectivity and, thus, facilitating cellular Na+ exclusion. This possibility is consistent with the report that in salt-stressed rice seedlings, the accumulation of Na+ in leaf tissues was not prevented by exogenous proline, hi contrast, treatment with exogenous trehalose significantly reduced the salt-induced accumulation of Na+ in the leaves Garaa et ah, "Effects of

OsmoprotectantsUponNaQ StoixsmKke" Plant Physiol, 115:159-169 (1997), which is hereby incorporated by reference in its entirety),
[0070) Transgenic lines R80 and A05 maintained shoot to root K* homeostasis
both under nonstress and salt-stress conditions (Table2), After salt stress, the levels of
shoot and root K* content in transgenic plants was similar to the nonstressed controls,
while a fourfold decrease in root K+ in the NTS plants was seen (Figure 2 £). Thus,
the transgenic plants were able to maintain a higher level of selectivity for K* over
Na+ uptake in the roots and Na1" exclusion from the shoots compared with the NTS
plants. The maintenance of the Na"VK* ratio in both shoot and roots of transgenic
plants (Figure 2 F) correlated with nearly normal plant growth and may be the basis
for minimizing Na+ toxicity under salt stress. It is generally accepted that the
maintenance of Na+/K^ homeostasis is an important aspect of salt tolerance (Rus et
al., "AtHKTl is a Salt Tolerance Determinant that Controls Na+ Entry into Plant
Roots," Proa Natl Acad ScL USA, 98:14150-14155 (2001) and Epstein, "Plant
Biology: How Calcium Enhances Plant Salt Tolerance," Science, 280:1906-1907
(1998), which are hereby incoiporated by reference in their entirety).
[0071] Several other changes in plant mineral status that may have played
indirect roles in stress tolerance were seen in the transgenic lines compared with the NTCs. It was found that salt stress led to a significant increase in root and shoot Ca2* content in the NTS lines, whereas in the transgenic lines, this Na-mediated increase in Ca2+ content was only observed in the shoots and not the roots (Table 2)* This rise in Ca2* maybe caused by alterations in die ion selectivity of die transporters at high concentrations of Na* (Epstein, "Plant Biology: How Calcium Enhances Plant Salt Tolerance," Science, 280:1906-1907 (1998), whidi is hereby incorporated by reference in its entirety). Significantly higher levels of shoot Fe ion content were also found in the transgenic lines compared with the NTCs (T Ale 2). It has been we31 documented that Fe, Cu, and Zn ions are essential for the function of critical antioxidant enzymes such as the superoxide dismutases that play a role in scavenging reactive oxygen species during a number of abiotic stresses (Epstein, 'Plant Biology: How Calcium Enhances Plant Sak Tolerance," Science, 280:1906-1907 (1998), Alscher et aL, 'Hole of Superoxide Dismutases^SODs) in Controlling Oxidative Stress in Plants, V. Etp. Bot., 53:1331-1341 -(2002), which we here Koiporated

by reference in their entirety), in general, the relationship between salt stress and plant mineral content is complex, and the links between elevated trehalose content and improved mineral status during salt stress are not known.
Exampleill- Transgenic Rice Plants are Water Stress Tolerant
[0072] To study drought tolerance, 5-week-old nontransformed and transgenic
seedlings grown in soil were subjected to two cycles stress. After the drought treatments, all IS plants of each line showed wilting and drought-induced rolling of the young leaves. Nontransgenic plants exhibited rolling of leaves within 48 h of the stress as compared with considerably fewer visual symptoms in transgenic plants during the same timeperiod, After two cycles of 100 h of drought stress and subsequent watering for 3 weeks, the growth of both the transgenic lines, R80 and A05 (Figure 3 5), were almost identical to nonstressed control plant {Figure 3 A). In contrast, the growth of the drougbt-stressed NTS was severely inhibited (Figure 3 J?).
Example 12- Transgenic Rice Plants Produced Increased Amounts of Trehalose and Other Soluble Carbohydrates
[0073) To evaluate whether trehalose accumulation in plants might act as a
positive regulator of stress tolerance, the levels of trehalose and other soluble carbohydrates were measured (Table 3).

Table 3. Levels of trehalose, glucose, fructose, sucrose, and total soluble carbohydrate content hi shoots of nontransformed (NT) and six transgenic rice lines (R22, R38, R80 A05, AG7, and A27) grown under no stress, salt-stressed (100 mM NaCl for 4 weeks), or drought-stressed (after first 100-hr drought stress cycle) conditions

Means ± SD (n = 3) are presented. Soluble carbohydrate content data is presented as mg/g shoot fresh weight, except in the case of trehalose, where it is presented as jig/g fresh weight

A low but significant amount of trehalose was detected in the shoots (17 jig/g fresh weight) of NTC plants; fheselevels increased significantly under salt or drought stresses. The transgenic plants grown under control conditions exhibited trehalose levels comparable with the NTS plants (Figure 4). After salt stress, the transgenic lines (R80 and A05) showed 2.5-3 times higher sboot trehalose levels compared with NTS plants, whereas after drought stress, trehalose levels in the transgenic lines increased 3- to 9-fold (Figure 4). Despite the similarities in tolerance levels exhibited by transgenic plants engineered to increase trehalose synthesis in either the cytosol or chloroplast, R-lines showed considerable protection at much lower trehalose concentrations during drought stress (Table 3), In general, there was no obvious relationship between trehalose accumulation and stress tolerance among the transgenic lines evaluated On the other hand, the difference in trehalose levels between the transgenic and nontransgenic lines clearly correlates with increased tolerance to abiotic stress.
Example 13- Transgenic Rice Plants Show Improved Photosystem II Function
[0074] During many different abiotic stresses, a reduction in photosynthesis
and the subsequent production of reactive oxygen species are thought to be a major contributor to decreased plant performance and photooxidative damage. The effects of increased trehalose accumulation on photosynthesis during drought stress were assessed by determination of the quantum yield of PS H photochemistry (ф psi ф by using in vivo chlorophyll fluorescence techniques (Saijo et aL, "Over-Expression of a Single Ca2+-Dependent Protein Kinase Confers Both Cold and Salt/Drought Tolerance on Rice Plants/9 Plant J.9 23:319-327 (2000), which is hereby incorporated by reference in its entirety). ф psi is a measure of the pbotosyn&etic performance of the plantunder ambient light conditios. After the first cycle of 100 b of drought stress, the quautum yield of PS II photochemistry inKTS plants decreased by «68%, whereas the activity of the two best-perfbiming transgenic lines (R80 and A05) only decreased by 29-37% compared with the nonstressed -controls (Figure 3 Q. Similarly, drought-induced decreases in the fluorescence parameter Fv/Fm, which is a measure of accumulated photo-oxidatrve damaged PS % woe considerably smaBer in the

transgenic lines than in the NTS plants (Figure 3 D). In other independent experiments, similarresults were obtained for both low-temperature stress (Figure 7) and salt stress, indicating the common role that maintenance of photosynthetic capacity plays in tolerance to thesestresaes.
Example 14- Transgenic Rice Plants Have Increased Capacity Under
Nonstress Conditions
[0075] Improved photosynthesis under abiotic stress conditions is known to
limit photo-oxidatxve damage and permit continued growth(Oweas, "Processing of Excitation Energy by Anterma Pigments”inPhotosynthesis and the Environment, Baker, e&, Kluwer, Dordrecht The Netherlands, pp. 1-23 (1996), which is hereby incorporated by reference in its entirety) and is clearly suggested by the data in Figure 3. Under the same conditions, transgenic plants exhibited soluble carbohydrate levels that were ==20% higher than those of corresponding NTC plants, including subtle changes in levels of glucose, fructose, and sucrose (Table 3). Both of fhese results are consistent with the suggestion that trehalose may be involved in sugar sensing and modulating carbon metabolism (Goddijn et aLs "Trehalose Metabolism in Plants/* Tr&ub Plant Sti.s 4:315-319 (1999), Theveleh and Hohmacn, Trehalose Synthase: Guard to the Gate of Glycolysis in Yeast?" Trends Biochem. Sci., 30:3-10 (199S), which are hereby incorporated by reference in their entirety). The ability of trehalose to modulatephotosynthetic capacity has been demonstrated recently (Paul et al., "Enhancing Photosynthesis with Sugar Signals," Trends Plant Sci., 6:197-200 (2001), which is hereby incorporated by reference in its entirety) in transgenic tobacco plants expressing E. coli trehalose biosyntheticgenes. Plants with enhanced IPS expression exhibited a higherphotosynthesis per unit of leaf area than nontransgenic controls, whereas those over-expressing TPP showed diminished rates of photosynthesis. These data lead them to conclude that it is trehalose-6-P and not trehalose that is modulating photosynthetic capacity (Paul et aL, 'Enhancing Photosynthesis with Sugar Signals," Trends Plant Sci., 6:197-200 (2001), whkfc is hereby incorporated by reference in its
entirety).
[0076] Figure 5 shows the light intensity dependence of PS
Reflection
transport rates, as determined by measurements {Saijo et aL, "Over-Expression of

a Single Ca2+-Dependent Protein Kinase Confers Both Cold and Salt/Drought Tolerance on Rice Plants," Plant J. 23319-327 (2000), which is hereby incoiporated by reference in its entirety) for nontransgenic rice and transgenic lines R80 and A05 measured under control (nonstress) conditions. Although the differences in photosynthesis are small at limiting li^ht intensities, at light saturation, the rates of photosynthesis in the transgenicplants are 5-15% higher than in the NTCs. At light saturation, photosynthetic rate is limited by the capacity of the daik reactions, in particular, the Calvin cycle and triose phosphate utilization in the cytoplasm (Owens, "Processing of Excitation Energy by Antenna Pigments," in Photosynthesis and the Environment, Baker, ed., Khiwer, Dordrecht, The Netherlands, pp. 1-23 (1996), which is hereby incorporated by reference in its entirety). Together with the observed higher levels of soluble carbohydrate under both stress and nonstress conditions (Table 3), the elevated levels of light-saturated photosynthesis in the transgenic plants supports the suggestion that in plants, trehalose a
and, thus, the expression of genes associated with carbon metabolism (Paul et al., "Enhancing Photosynthesis with Sugar Signals" Trends Pima Scu9 6:197-200 (2001), which is hereby incorporated by reference in its entirety). The presence of a higher capacity for photosynthesis before stress provides a larger sink for the products of photosynthesis during stress, thus limiting the extent of excess-light-induced photooxidatxve damage and accounting, in part, for the more vigorous growth of the transgenic lines during stress. Interestingly, the higher efficiency of trehalose synthesis by the TPSP fusion gene product (Seo et al., "Characterization of i Bifunctional Enzyme Fusion of Trehalose-6-Phosphate Synthetase and Trehalose^ Phosphate Phosphatase of Escherichia coli? AppL Environ. Microbiol, 66*2484-2490 (2000), which is hereby incorporated by reference in its entirety) would suggest that trehalose, rather than trehalose-6-P is leading the enhanced capacity for photosynthesis.
Example 15 - Productioii of Transgenic Wheat Plants
[0077] Immature embryos were isolated from greenhouse-grown wheat
(Triticum aestiwm L.) cv. Bob White spring wheat variety and precultured-for 1-4

days in the dark on modified MS medium before bombardment, as reported by Weeks et aLs "Rapid Production of Multiple Independent lines of Fertile Transgenic Wheat (Triticum aestivum), Plant Physiol 102:1077-1084 (1993), which is hereby incorporated by reference in its entirety. Preparation of gold particles and coating with plasmid DNA was carried out based on the mainrfacturer's instructions (Bio-Rad, Hercules, CA, USA). Osmotic treatment of target tissue before and after bombardment was performed. Bombarded tissue was placed on the same culture medium supplemented with 5 mg l"1 bialaphos (a gift from Dr. H. Anzai, Medji Seika Kaisha, Japan) for 4 weeks at 25°C in the dark Bialaphos-resistant caffi were transferred to regeneration medium (MS medium containing 2% sucrose, 0*15 mg l"1 thidiazuron and 1 mg 1"J bialaphos) for 2-3 weeks at 25°C under a 16 h photoperiod (66 mol m-2 s-1). After -2 weeks, regenerated shoots were transferred to Magenta9 boxes (Sigma, St Louis, MO, USA) containing rooting medium (half-strength MS medium and 2 mg l1 bialaphos) for 2-4 weeks at 25°C under the above light conditions.
[0078] Plantlets were transferred from rooting medium to greenhouse potting
mix (Sunshine mix number 1; Fison's, Canada) and were covered with beakers for the first few days after transplantation to prevent desiccation. Greenhouse day/night temperatures were 25+2/19°C under a 16 h photoperiod wife supplemental lights to provide 150 junol m s light intensity. Herbicide resistance of primary transfonnants and progeny was tested by a leaf painting assay and/or spraying with a 1000-fold dilution of the commercial herbicide Glufosinate 200™ (AgrEvo, NJ, USA) containing 20% ammonium glufosinate.
Example 16- Detecting the Presence of SB109-TPSP and Bar Genes in Transformed Wheat Plants
[0079J A total of 35 putative transgenic wheat lines containing the plasmid
pSB 109-TPSP (that contains ABA stress-inducible promoter driving TPSP fusion gene) were successfully regenerated, Gne-monfiwrtd plants that were transferal to pots in the greenhouse were tested for phosphmofhricixhbased herbicide-resistance by painting the leaves using 05% Basta™-(Hoedist-Roussd:( Agri-Vet Company, Somervflle, NJ). The leaves remained green in 57% transgenic plants and showed

Basta-heihicide resistance, but in sensitive and non-transgenic control plants the leaves tamed yellow. Integration of TPSP gene was confirmed by PCR analysis. Two sets of primers were designed from the TPSP gene (TPS1/TPS2, TPP1/TPP2) for PCR analysis of the genomic DNA. Out of the 20 plant DNA samples analyzed using either of the primer pahs, 9 plants showed the expected PCR product, confirming the presence of the transgene. Interestingly, most of the primary transfonnants appears to be phenotypically normal, unlike the other reports in dicots where multiple pheaotypic alterations/pleiotropic effects were observed when trehalose gene(s) were expressed constitutively. This may be because of the regulated expression of trehalose biosynthetic gene in wheat
Example 17- Transgenic Wheat Plants are Salt-Stress Tolerant
[0080] Transgenic plants that harbor die TPSP gene were analyzed for salt
tolerance. Leaf segments of 0.5 cm long were cut from transgenic and non-transgenic
plants and floated on different solutions of NaCl (200, 400, and 800 mM) with the
upper surface of the discs in contact with the solution and kept under continuous
white light for 72 hours. The leaf segments were then rinsed with distilled water and
extracted with DMF (N» N'-dimethyl formamide) by grinding with 1 ml of DMF with
a pestle and mortar. The homogenate and washing solution (1 ml) with the solvent
were centrifuged at 2,500 rpm for 10 minutes. The pellet was then vortexed with 05
ml of solvent and the pooled supernatants were adjusted to a final volume of 3 mL
Ihe absorption (A) of die leaf extract at 664 nm and 647 nm was measured with a
spectrophotometer. Chl-a, Chl-b, and Chl-a+Chl-b concentrations (pg/ml) were
calculated by the following equations: Chl-a -12.00 A-664 minus 3.11 A*647, Chl4)
- 20.78 A-664 minus 438 A-647, andCfcl-a + Oil* «17.67 A-647 + 7.12 A-664.
[0081] Ihe results showed that leaf segments from the plants expressing the
TPSP gene showed tolerance to NaCl with little or no significant bleadung, whereas that from the wild type showed extensive bleaching. Next, chlorophyll was isolated from control samples without-salt treatment and samples after 72 hours of NaCl treatment Chlorophyll content in plants in the absence of salt treatment was determined and set at 100. TTie results showed dwtmnon4ransgmic control i^airis,

the chlorophyll content was decreased by ^^proximately 15% at 400 mM salt, and approximately 25% at 800 mM Nad In contrast, in the case oitransgenic lines, after salt stress the chlorophyll content was almost as high as that without salt stress.
Example 18- Transgenic Wheat Plants are Water-Stress Tolerant
[00S2J A test for water-stress tolerance was earned out by measuring the
electrolyte conductivity of fixe solution after soaking the leaf samples. Leaf segments
were excised from plants. Duplicate samples (5 mg each) from each of two nan*
transgenic plants and each of four transgenic plants woe excised from the plants. The
leaf samples wore placed on dry filter paper in 9-cm diameter Petri dishes and allowed
to dry inside of a Laminar Flow Hood. Six bonis later, the samples were transferred
to different test-tubes that contained 2 ml distilled water. The test-tubes wore
subjected to vacuum three times at five-minute intervals at 60 psi to remove air
bubbles adhered to the surface of leaves. The tubes then were shaken at 300 rpm for 2
hours in a slanted position After shaking, the conductivity of the solution was
measured using a conductivity meter (VWR International, West Chester, PA).
[0083J These results showed that the electrical conductivity of-solutions used
to soak leaves from non-transgenic plants was 5,4 leaf, whereas that from
different transgenic lines was between 3,100 and 3,700 o/mg leaf These results
indicated that leaves from transgenic plants are less damaged by drying. In other
words, leaves from transgenic plants are more tolerant to water stress.
[0084] Although the invention has been described in detail for the purpose of
illustration, it is understood that such detail is solely for that purpose, and variations can be made therein by those skilled in the art without departing from the spirit and scope of the invention which is defined by the following claims.























































WHAT IS CLAIMED:
1. A transgenic monocot plant transformed with a nucleic add encoding an enzyme for trehalose biosynthesis, under control of an inducible promoter, that confers low temperature stress, salt stress, or water stress tolerance to the plant
% The transgenic monocot plant according to claim 1, wherein said monocot plant is selected from the group consisting of rice, wheat, maize (com), barley, oat, rye, millet, and sorghum.
3. The transgenic monocot plant according to daim 2, wherein . said monocot plant is a rice plant
4. The transgenic monocot plant according to daim 2, wherein said monocot plant is a wheat plant.
5. The transgenic monocot plant according to claim 1, wherein the enzyme for trehalose biosynthesis is trehalose-6-phosphate synthase.
6. Hie transgenic monocot plant according to daim 5, wherein said trehalose-6-phosphate synthase is encoded by an E. coli otsA gene.
7. The transgenic monocot plant according to claim 1, wherein the enzyme for trehalose biosynthesis is trehalose-6-phosphaie phosphatase.
8. The transgenic monocot plant according to claim 75 wherein said trehalose-6-pbosphate phosphatase is encoded by an E coli otsB gene.
9. The transgenic monocot plant according to claim 1, wherein transgenic monocot plant is additionally transformed with a second nucleic add encoding an enzyme for trehalose biosynthesis.

10. The transgenic monocot plant according to claim 1, herein transgenic monocot plant is transformed with a trehalose-6-phosphate syntHhase/trebaiose-6-phosphate phosphatase fusion gene.
11. The transgenic monocot plant according to claim 1, wherein said inducible promoter is a stress-inducible promoter or a light-induclble promoter.
12. The transgenic monocot plant according to claim 11, wherein the inducible promoter is a stress-inducible and an abscisic acid-indudble promoter.
13. The transgenic monocot plant according to claim 11, wherein the inducible promoter is a light-inducible, RbcS promoter.

14. A transgenic monocot plant according to claim 1, wherein said transgenic monocot plant includes a nucleic add encoding a selectable marker.
15. A seed produced by the transgenic monocot plant of claim 1.
16. A seed, which upon germination, produces the transgenic monocot plant of claim 1.
17. A monocot plant cell or protoplast transformed with a nucleic acid encoding an enzyme for trehalose biosynthesis, under control of an inducible promoter, that confers low temperature stress, salt stress, or water stress tolerance on a monocot plant regenerated from said monocot plant cell or protoplast
18. Hie monocot plant cell or protoplast according to claim 17, wherein said monocot plant cell or protoplast is derived from a plant selected from the group consisting of rice, wheat, maize (com), barley, oat, rye, millet, and sorghum-

19- The monocot plant cell or protoplast according to claim 18,
wherein said monocot plant cell or protoplast is derived from a rice plant . .
20. The monocot plant cell or protoplast according to claim 18, wherein said monocot plant cell or protoplast is derived from a wheat plant
21. The monocot plant cell or protoplast according to claim 17, wherein the enzyme for trehalose biosynthesis is trebalose-6-phosphate synthase.
22. The monocot plant cell or protoplast according to claim 21, wherein said trehalose-6-phosphate synthase is encoded by an E. coli otsA gene.
23. The monocot plant cell or protoplast according to claim 17, wherein the enzyme for trehalose biosynthesis is trehalose»6-phosphate phosphatase.

24. The monocot plant cell or protoplast according to claim 23, wherein said trehalose-6-phosphate phosphatase is encoded by an £. coli otsB gene,
25. The monocot plant rail or protoplast according to claim 17, wherein the monocot plant cell or protoplast is additionally transformed with a second nucleic add encoding an enzyme for trehalose biosynthesis.
26. The monocot plant cell or protoplast according to claim 17, wherein the monocot plant cdl or protoplast is transformed with a trehalose-6-phospbate synthase/trdtialose-6-phosphate phosphatase fusion gene,
27. The monocot plant cell or protoplast according to claim 17, wherein said inducible promoter is a stress-inducible promoter or a light-inducible promoter.
28. The monocot plant cell or protoplast according to claim 27, wherein the promoter is a stress-inducible and an abscisic acid-indutible promoter.

29. Hie monocot plant cell or protoplast according to claim 27, wherein the promoter is a ligbt-inducible, KbcS promoter,
30. The monocot plant cell or protoplast according to daim 175 wherein said monocot plant cell or protoplast includes a nucleic acid encoding a selectable marker,
31. A transgenic monocot plant regenerated from the monocot plant cell or protoplast of claim 17,
32. The transgenic monocot plant according to claim 31? wherein said transgenic monocot plant is a rice plant
33. The transgenic monocot plant according to claim 31, wherein said transgenic monocot plant is a wheat plant
34. A seed produced by the transgenic monocot plant of claim31,

35. The seed produced by the transgenic monocot plant according to daim 34, wherein the transgenic monocot plant is a rice plant
36. The seed produced by the transgenic monocot plant according to claim 34, wherein the transgenic monocot plant is a wheat plant
37. A transgenic monocot plant regenerated from the monocot plant cell or protoplast of claim 25.
38. The transgenic monocot plant according to daim 37, wherein said transgenic monocot plant is a rice plant

39. The transgenic monocot plant according to claim 37, Wherein said transgenic monocot plant is a wheat plant
40. A seed produced by the transgenic monocot plant of claim 37-
41. The seed produced by the transgenic monocot plant according to claim 40, wherein the transgenic monocot plant is a rice plant
42. The seed produced by the transgenic monocot plant according to claim 40, wherein the transgenic monocot plant is a wheat plant
43. A transgenic monocot plant regenerated from the monocot plant cell or protoplast of claim 26.
44v- The transgenic monocot plant according to claim 43, wherein said transgenic monocot plant is a rice plant
45. The transgenic monocot plant according to claim 43, wherein said transgenic monocot plant is a wheat plant
46. A seed produced by the transgenic monocot plant of claim 43.
47. The seed produced by the transgenic monocot plant according to claim 46, wherein the transgenic monocot plant is a rice plant
48. The seed produced by the transgenic monocot plant according to claim 46, wherein the transgenic monocot plant is a wheat plant
49. A method of conferring low-temperature stress, water stress, or salt stress tolerance to a monocot plant comprising:
transforming a monocot plant cell or protoplast with a nucleic acid encoding an enzyme for trehalo biosynthesis under conditions effective to confer

low temperature stress, salt stress, or water stress tolerance to monocot plants produced from the monocot plant cell or protoplast
50. The method according to claim 49, wherein said monocot plant cell or protoplast is derived from a plant selected from the group consisting of rice, wheat, maize (coin), barley, oat, rye, millet, and sorghm.
51 - The method according to claim 50, wherein said monocot plant cell or protoplast is derived from a rice plant
52. The method according to claim 50, wherein said monocot plant cell or protoplast is derived from a wheat plant
53. The method according to claim 49, wherein the enzyme for trehalose biosynthesis is trehalose-6-phosphate synthase.
54. The method according to claim 53, wherein said trehalose^ phosphate synthase is encoded by an E. coli otsA gene.
55. The method according to claim 49, wherein the enzyme for trehalose biosynthesis is trehaiose-6-phosphate phosphatase.
56. The method according to claim 55, wherein said trehalose-6-phosphate phosphatase is encoded by an E, coli otsB gene.
57. The method according to claim 49 further comprising:
transforming the monocot plant cell or protoplast with a second nucleic
acid encoding an enzyme for trehalose biosynthesis.
58. The method according to claim 49, wherein the monocot plant
cell or protoplast is transformed with a trehalose-6-phosphaie synthase/trehalose-6-
phosphate phosphatase fusion -gene.

59. The method according to claim 49, wherein said transfonning
emprises:
propelling particles at said monocot plant cell under conditions Effective for the particles to penetrate the cell interior, and
introducing a plasmid comprising the nucleic add encoding an enzyme or trehalose biosynthesis into the cell interior,
60. Hie method according to claim 59, wherein the plasmid is issociated with the particles, whereby the plasmid is carried into the cell or protoplast nterior together with the particles.
61. The method according to claim 49, wherein said transfonning soraprises:
contacting tissue of the monocot plant with an inoculum of a bacterium of the genus Agrobacterium, wherein the bacterium is transformed with a plasmid comprising the nucleic acid encoding an enzyme for trehalose biosynthesis,
62. The method according to claim 49 further comprising:
regenerating the transformed monocot plant cell or protoplast to form a
transgenic monocot plant
63. A transgenic monocot plant produced by the method of
claim 62.
64. A seed produced by fee transgenic monocot plant of claim 63.
65. A method of increasing tolerance of a monocot plant to low-
temperature stress, salt stress, or water stress conditions, said method comprising:
increasing levels of an enzyme for trehalose biosynthesis in said monocot plant

66. The method according to claim 65, wherein said monocot plant is selected from the group consisting of rice, wheat, maize (com), barley, oat, rye, -millet and sorghum.
67. The method according to claim 66, wherein said monocot plant is a rice plant
68. The method according to claim 66, wherein said monocot plant is a wheat plant.
69. Tht method according to claim 65, wherein the enzyme for trehalose biosynthesis is trehalose-6-phosphate synthase.
70. Hie method according to claim 69. wherein said trehalose-6-phosphate synthase is encoded by an£. coli otsA gene.
71. The method according to claim 65, wherein the enzyme for trehalose biosynthesis is trehalose-6-phosphate phosphatase.

72. The method according to claim 71, wherein said trchalose-6-phosphate phosphatase is encoded by an E coli ots B gene
73. A transgenic monocot plant transformed with a plasmid that confers low temperature stress, salt stress, or water stress tolerance to the monocot plant, said plasmid comprising:
a first nucleic add encoding trefaalose-6-phosphate synthase; a first inducible promoter, said promoter located 5' to said first nucleic acid and controlling expression of said first nucleic acid; and
a first termination sequence located 3' to said first nucleic acid.
74. The transgenic monocot plant of daim 73, wherein-said
plasmid further comprises:

a second nucleic acid encoding trehalose-6-phosphate phosphatase, said second nucleic add located 3' to said fist inducible promoter controlling expression of said second nucleic add, 3' to said first nucldc acid, and 5' to said first termination sequence,
75. The transgenic monocot plant of claim 74, wherein said second nucleic add is fused with said first nucleic add and coexpressed under control of said first inducible promoter.
76. The transgenic monocot plant of claim 73, wherein said plasmid further comprises:
a third nucldc add encoding a selectable marker, said third nucldc add located 3' to said first termination sequence;
a second promoter located 5' to said third nucldc add and 3' to said first termination sequence, said second promoter controlling expression of said third nucldc add; and
a second termination sequence located 3' to said third nucldc add.
77. The transgenic monocot plant of claim 73, wherein said
inducible promoter is a stress-indudble promoter or a ligfal-inducible promoter.
78. Hie transgenic monocot plant of daim 77, wherein the promoter is a stress-inducible and absdsic add-indudble promoter,
79. The transgenic monocot plant of daim 77, wherein the promoter is a light-indudble, RbcS promoter.
SO. The transgenic monocot plant of claim 76, wherein the plasmid is designated pSB109-TPSP.

81. The transgenic monocot plant of claim 76, wherein the plasmid
is designated pSB-RTSP.
82. The transgenic monocot plant of claim SO, -wherein the
5 inducible promoter is a stress-indudble and abscisic acid-inducible promoter.
83. The transgenic monocot plant of claim 81, wherein the
promote is light-indutible, RbcS promoter.


Documents:

0840-chenp-2005 abstarct-duplicate.pdf

0840-chenp-2005 claims-duplicate.pdf

0840-chenp-2005 description (complete)-duplicate.pdf

0840-chenp-2005 drawings-duplicate.pdf

840-CHENP-2005 POWER OF ATTORNEY.pdf

840-chenp-2005-abstract.pdf

840-chenp-2005-claims.pdf

840-chenp-2005-correspondnece-others.pdf

840-chenp-2005-correspondnece-po.pdf

840-chenp-2005-description(complete).pdf

840-chenp-2005-drawings.pdf

840-chenp-2005-form 1.pdf

840-chenp-2005-form 18.pdf

840-chenp-2005-form 3.pdf

840-chenp-2005-form 5.pdf

840-chenp-2005-pct.pdf


Patent Number 229364
Indian Patent Application Number 840/CHENP/2005
PG Journal Number 12/2009
Publication Date 20-Mar-2009
Grant Date 17-Feb-2009
Date of Filing 05-May-2005
Name of Patentee CORNELL RESEARCH FOUNDATION, INC
Applicant Address 20 Thornwood Drive, Suite 105, Ithaca, New York 14850,
Inventors:
# Inventor's Name Inventor's Address
1 WU, Ray, J 111 Christopher Circle, Ithaca, New York 14850,
2 GARG, Ajay, K 134 Gram Road, Apt.3A6, Ithaca, New York 14850,
3 JU-KON KIM Myongji University, Yongin 449-728,
PCT International Classification Number C12N
PCT International Application Number PCT/US2003/035233
PCT International Filing date 2003-11-03
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/430,861 2002-12-04 U.S.A.
2 60/424,410 2002-11-06 U.S.A.