Title of Invention

A PROCESS FOR THE PREPARATION OF POLYMERIZABLE MACROMERS

Abstract The present invention relates to a polymerizable macromers for applications in medicine and biotechnology and synthesis thereof. The molecular weight of polymerizable macromers ranges between 700 Daltons to 1,00,000 Daltons having formula (1) (Formula Removed) wherein, R is H,CH3,C2H5,C6H5, X is between 4 to 10, n is from 3 to 50 Y is N-Acetyl Glucosamine(NAG), mannose, galactose, sialic acid, fructose, ribulose, erythrolose, xylulose, psicose, sorbose, tagatose, glucopyranose, fructofuranose, deoxyribose, galactosamine, sucrose, lactose, isomaltose, maltose, cellobiose, cellulose and amylase. The polymerizable macromer could be used for prevention and treatment of bacterial and viral infections. Moreover these macromers can be copolymerized with other comonomers to form stimuli sensitive polymers and used for the recovery of biomolecules. The methodology can be extended to other ligands such as sialic acid and used for preventing influenza and / or rotavirus infections.
Full Text FIELD OF INVENTION
This invention relates to a process for the preparation of polymerizable macromers containing N-Acetyl Glucosamine (NAG) of molecular weight ranging between 700 Daltons to 1,00,000 Daltons having formula herein below
(Formula Removed)
wherein,
R is H,CH3, C2H5,C6H5,
X may be between 4 to 10, n is from 2 to 50
Y may be N-Acetyl Glucosamine (NAG), mannose, galactose, sialic acid, fructose,
ribulose, erythrolose, xylulose, psicose, sorbose, tagatose, glucopyranose,
fructofuranose, deoxyribose, galactosamine, sucrose, lactose, isomaltose, maltose,
cellobiose, cellulose and amylose.
More particularly it relates to the said polymerizable macromers containing
carbohydrate ligands and preparation thereof through the specific linkage mentioned
herein. Still more particularly it relates to macromer, which bind more strongly to
lysozyme than NAG itself.

The macromers of the present invention as mentioned above are prepared by coupling acryloyl-spacer conjugate of formula (2) claimed in our copending Patent Application no 02994delnp2006 entitled'Oligomer and preparation thereof herein below
(Formula Removed)
wherein,
R is H, CH3, C2H5, C6H5, X may be between 4 to 10.
with functional polyvalent oligomers comprising NAG, sialic acid, galactose or
mannose exemplified with NAG as herein given below having Formula (3)

(Formula Removed)

wherein, n = 2 to 50

The polymerizable macromers may be used for inhibition of viral infections and the
recoveries of biomolecules. The approach of synthesis of polymerizable macromers with
ligand N-Acetyl Glucosamine (NAG) is a generic and can be used for other ligands such
as sialic acid, galactose and mannose.
BACKGROUND AND PRIOR ART REFERENCES:
Carbohydrates play a crucial role in biological phenomena and therefore these molecules
have attracted the attention of chemists and biochemists. These biomolecules are
ubiquitous, figuring prominently in various processes such as cell differentiation, cell
growth, inflammation, viral and bacterial infection, tumorigenesis and metastasis (Rouhi
A.,M, C & EN, Sept 23,62-66,1996).
Many infections caused by bacteria and virus are a result of host receptor interactions. The
foremost step for the infection is the adhesion of the ligands present on the infectious
microbe to the receptors of the host cells. Adhesion and interactions have to be strong for a
successful infection. If the adhesion is not adequate then normal defense mechanism can
intercept this process. Viruses and bacteria for example interact with certain saccharides of
the host cell. Bacteria express a large number of lectins and are used to adhere to
glycocalyx of the host cell through a multivalent interactions. Agglutination of
erythrocytes is a case in point.
Carbohydrates exhibit molecular diversity and wide structural variations, which makes
carbohydrates alternative ligands for competitive binding to inhibit the infections.
Many alterations and modifications of the naturally occurring O-/ N-glycosidic sugars are
being reported and is an area of prime interest to the chemist and biochemist.
The importance of carbohydrates in biologically relevant recognition processes has been
recognized fairly recently (Feizi, T., Biochem. J. 245:1,1987). In addition, carbohydrates
on cell surfaces play an important role in intercellular communication and recognition
processes, which is principally based on receptor-ligand interactions.
Carbohydrates are usually attached to other moieties such as lipids or proteins.
Belvilacqua et al., (Science, 243:1160,1989) have demonstrated the role of carbohydrates
along with proteins and nucleic acids as a primary biological information carriers.
The inventors of the present invention have observed that it may be worthwhile to use
carbohydrates in therapeutics for human, especially since they can play an important role
in prevention of viral and bacterial infections. Recently few reports have been published to
justify the use of carbohydrates. Krepinsky et al. (United States Patent 6,184,368, 2001)
suggested the application of carbohydrates in preventing the infections. Mandeville, et al.
(United States Patent, 5,891,862,1999) reported the use of polyvalent polymers containing
carbohydrates for the treatment of rotavirus infection
Polyvalent molecules bind to the receptor molecules through multiple contacts, which
results in strong binding. However the synthesis of ligands is critical and involves multiple
steps. The polyvalent interactions can be maximized by incorporation of ligands optimally
tailored based on the understanding of the binding between the ligand and the host
receptor. The enhanced interactions are important especially when the ligands are
expensive e.g. sialic acid.
The inventors of the present invention have also observed that interactions of ligand with a
receptor can be enhanced by 1) appropriate incorporation of the ligand 2) incorporation of
spacer chain and 3) by steric stabilization/exclusion.
Spaltenstein et al., (J.Am.Chem.Soc.,113:686,1991) reported increased interaction
between the receptor and ligand due to plurality of binding ligands and the receptors on
the host surface. This was illustrated by the influenza virus hemagglutinin, which binds to
neuraminic acid on the cell surface, which has a greater affinity for its receptor when a
polyvalent structure is presented.
The early phase of infection by viral, parasitic, mycoplasmal and bacterial pathogens, is
achieved by specific adhesion to cell surface carbohydrate epitopes (Dimick,et al.
(J.Am.Chem.Society, 121,10286-10296,1999). Dwek, et al. (Chem. Rev., 96,693, 1996)
reported the initiation of a wide range of human disease is mediated by proteincarbohydrate
recognition step.
If relative density and spatial arrangement of ligands incorporated is optimized, then the
binding can be substantially enhanced. The enhanced interaction between molecular
conjugate with a specific binding site of biomolecule also finds applications in affinity
separations, drug delivery and biotechnology.
To imitate and exploit this mechanism there is a need to devise a simple synthetic
methodology, which will enhance substrate ligand interactions.
Design of high affinity protein carbohydrate binding systems can provide an alternative
strategy for the treatment of infectious diseases e.g. influenza and rotavirus. This has the
advantage as such agents will not have pathogen resistance to antibiotics and drugs. A new
approach to treat influenza is based on the principle of inhibition of virus to the host cells.
The inhibitors like sialic acid anchored to polymeric or liposomal carriers have been
reported in the past.
Since monovalent interactions of natural oligosaccharides are weak, they need to be used
in large quantities for an effective treatment. This problem can be overcome by
synthesizing polyvalent carbohydrate molecules (Zopf, D., Roth, S. Lancet 347, 1017,
1996). The concept is attractive since it would provide a non-toxic therapeutic to a wide
range of human diseases. But synthesis of such compounds is critical and requires
knowledge of the host-cell binding mechanism.
Polymeric ligands that bind to the virus more powerfully than the Red Blood Cells will
prevent the influenza infection. Similar binding is also involved in rotavirus infections.
(Mandeville et al. United States Patent 6,187,762, 2001)
Advantage of carbohydrate modification lies in that it may impart change in physical
characteristics such as solubility, stability, activity, antibody recognition and susceptibility
to enzyme. Sharon, et al., (Science,246:227-234,1989) reported carbohydrate portions of
glyco-conjugate molecules to be important entity in carbohydrate biology.
Haemagglutination can be prevented by saccharides multivalent glycoconjugates, which
bind to the bacterial lectins and thus inhibit bacterial adhesion, (Sigal, et
al.,J.Am.Chem.Soc.l 18:16,3789-3800,1996).
Damschroder, et al. (United States Patent 2,548,520,1951) reported high molecular weight
preformed polymers conjugated with unsaturated monomers or proteins. Synthesis of high
molecular weight materials of this kind generally requires temperatures up to 100 ° C.
Such high temperatures are not well tolerated by most of the proteins as they are
thermolabile. Thus the methods described are unsuitable for producing polymers of
biologically active molecules.
Carbohydrates can be used as functionalized ligands by incorporation into polymer or
macromer backbone. The macromer containing polyvalent ligand can be
homopolymerized or copolymerized with suitable monomer to form a multivalent
conjugate. Multivalent ligand may include shorter oligomers having pendant functional
groups that may impart desirable properties to the polymer.
The present invention involves coupling of oligomers comprising NAG and bearing
terminal functional groups adequately described and covered in our copending patent
application no. NF 363/02 entitled "Oligomer and preparation thereof " with
polymerizable monomers containing vinyl unsaturation optionally containing a spacer to
yield a macromers. We have demonstrated that macromers bind to lysozyme more
strongly as evidenced by values of Kb and inhibit lysozyme more efficiently as evidenced
by values of 150-
Multivalent macromers of varied length and density will be useful for receptor ligand
interactions of biological origin. Various chemical and chemoenzymatic methods have
been reported in the past for the preparation of di and trivalent ligands, dendrimers, and
high molecular weight polymers but have proven to be complicated to synthesize.
Thus, there is necessity of a simple methodology to obtain multivalent ligands and
polymers of varying chain length.
Mammen, M., and Whitesides,G.,M., demonstrated that (J.Med.Chem.38:21,4179-
90,1995) agglutination of erythrocytes caused by influenza virus could be prevented by
use of polyvalent sialic acid inhibitor. Moreover, they suggested two favorable
mechanisms for inhibition between the surfaces of virus and erythrocytes 1) high-affinity
binding through polyvalency, and 2) steric stabilization. This novel approach is a model
for pathogen-host interactions.
Sigal, et al. (J.Am.Chem.Soc.l 18:16,3789-3800,1996) prepared polymers containing
sialoside and evaluated the efficiency of inhibition of influenza virus in terms of inhibition
constants (Kj).Although the authors observed that the extent of inhibition and minimum
inhibition concentration decreased with increase in polymer molecular weight and sialic
acid content, it was also noted that not all sialic acid ligands were involved in binding with
the virus. This clearly indicates need of tailoring the polymer structure so that higher
fraction of ligands is involved in binding.
Spevak et al. (J. Am. Chem. Soc., 115,1146-1147, 1993) reported the polymerized
liposomes containing C-glycosides of sialic acid, which were potent inhibitors of influenza
virus. Moreover the authors demonstrated that the infection was inhibited more effectively
when the ligand bearing monomer was polymerized.
Various methods have been reported in the past to synthesize multivalent ligands such as
Ring-Opening Metathesis Polymerization (ROMP). ROMP has been used to generate
defined, biologically active polymers by Gibson et al., (Chem. Comm., 1095-1096,1997)
and Biagini et al., (Polymer, 39,1007-1014 ,1998).
Carbohydrate receptors also have a role in intracellular trafficking of macromolecules.
Therefore, macromolecules containing suitable ligands find applications in biomedical
field for e.g. in targeting of drugs to certain tissues and cells in the organisms.
Recent advancements in the field of glycoscience have demonstrated enhanced binding
between carbohydrate ligands and specific receptors as a result of the cluster effect. These
interactions are result from intrinsic properties of such ligands.
Various methods have been reported in the past for the synthesis of glycoconjugate
oligomers and the clusters for the receptor binding activity. Nishimora, et al.
(Macromolecules, 27, 4876-4880,1994) synthesized sugar homopolymer clusters from
acrylamidoalkyl glycosides of N-Acetyl-D-Glucosamine. On addition of the polymer
clusters, binding to WGA was enhanced.
The polyvalent interactions have several advantages over monovalent interactions as a
result of mode of receptor binding. Moreover, multivalent interactions lead to
conformational contact with biological receptors, which subsequently results in enhanced
interaction with the substrate.
Previous methods of synthesis of polyvalent ligands are complicated and need higher
inhibition concentrations. It is reported that the polymeric fucosides are resistant to
neuraminidase enzyme present on the surface of influenza virus. The viruses also cleave
sialic acid groups from molecules that bind to the surface of the virus, and thereby destroy
the binding ability.
The polymerizable macromers reported by the inventors of the present invention are
effective at very low concentration which is a significant advantage when the ligands
under consideration are expensive e.g. sialic acid. Further, these macromers can be
copolymerized with other comonomers to provide copolymers containing polyvalent
ligands. Moreover, the process reported here for the incorporation of polyvalent ligands
into polymerizable macromers is relatively simple and involves lesser steps.
The polymerizable macromers are of suitable molecular weights, which can efficiently
bind to the target site.
The ligands on the polymerizable macromers have ability to bind to various substrate
molecules simultaneously. It is expected that the presence of multiple ligands in the
backbone can enhance binding to the viruses and biomolecules. Thus the polymerizable
macromer containing multiple ligands at low concentration are utilized and can potentially
interact with multiple receptors thereby enhancing the inhibition.
OBJECTIVE OF INVENTION
The object of the present invention therefore is to prepare polymerizable macromers
comprising polyvalent NAG, which exhibit multivalent interactions and simple and novel
process for the preparation thereof. The merits of the approach have been highlighted
using NAG as an illustration.
Another object is to provide polymerizable macromers which are more effective in
binding with the lysozyme as evidenced by the values of the binding constants Kb and
relative inhibition of lysozyme more effectively as evaluated by the values of I so
Yet another object is to provide polymerizable macromers for applications in medicine
and biotechnology.
Yet another object is to provide a convenient process of preparation of polyvalent ligand
NAG, mannose, galactose or sialic acid, fructose, ribulose, erythrolose, xylulose, psicose,
sorbose, tagatose, glucopyranose, fructofuranose, deoxyribose, galactosamine, sucrose,
lactose, isomaltose, maltose, cellobiose, cellulose and amylose.
Another object is to provide a convenient process of preparation of polymerizable
macromers, in the form of monomers containing Acryloyl, Methacryloyl or Para Vinyl
Benzoyl (PVB) moieties.
Yet another object is to provide a convenient process of incorporation of spacer arm to a
polymerizable monomer.
Yet another object is to provide a convenient process of conjugation of polymerizable
monomer containing a spacer arm and polyvalent ligand.
Yet another object is to provide a process of preparation of polymerizable macromers
containing NAG ligands for enhanced interactions.
Still another object is to provide more stable ligands for the interactions with biomolecules
than the natural polymers such as chitin and chitosan containing natural ligand NAG.
Therefore, the objective of the present work is to provide polymerizable macromers
containing polyvalent ligand for enhanced interactions with the substrates and the process
for the preparation thereof.
Chitosan is a linear, binary heteropolysaccharide and consists of 2-aceta amido-2-deoxy -
p-D-glucose (GlcNAc; A-unit) and 2-amino 2-deoxy-p-D-glucose (GlcNAc, D-unit). The
active site of lysozyme comprises sub-sites designated A-F. Specific binding of chitosan
sequences to lysozyme begins with binding of the NAG units in the subsite C. Moreover,
there is a need to synthesize ligands similar to repeat units of chitosan which will not be
hydrolyzed by lysozyme. Moreover natural ligands derived from glucose are susceptible to
microbial growth. The polymerizable macromers reported here are stable than chitin and
chitosan reported earlier.
In our copending application no NF 363/02 entitled "Oligomer and preparation thereof
we have shown that the oligomers of NAG in which the NAG groups are juxtaposed to
one another, bind more effectively to lysozyme as reflected in values of binding constant
(Kb) and the inhibition concentrations I5o
The present invention provides polymerizable macromers containing NAG for a
biomolecular target and method for preparation thereof.
The macromers reported here can be homopolymerized or copolymerized with suitable
monomers. The approach described to prepare polyvalent carbohydrate macromer
containing NAG ligands is simple and can be used to synthesize other macromeric ligands
such as sialic acid which bind to influenza virus and rotavirus. Such macromeric ligands
may be even used as antiinfective agents both for prevention and treatment of diseases.
Moreover, macromers containing NAG can be anchored to thermoprecipitating polymers
that can be used for the recovery of biomolecules such as lysozyme and lectins.
The polymerizable polyvalent macromers provided by the present invention can be
used for application in recoveries of biomolecules.
The macromers comprising monomer conjugated with polyvalent ligands may also
further be used in the treatment of bacterial or viral infections, and are expected not
to cause drug resistance.
The approach described herein is a generic one and can be extended to other
systems as well for example sialic acid.
SUMMERY OF THE INVENTION
The present invention provides process for the for the preparation of polymerizable macromers containing polyvalent N-Acetyl Glucosamine. The macromers contain polymerizable monomer conjugated to spacer arm covalently bonded to the polyvalent ligand. The macromers reported in this invention provide improved binding and inhibition even at low concentration. Macromers can be used for prevention of viral infections and recoveries of biomolecules.
DETAILED DESCRIPTION OF THE INVENTION
The present invention relates to a process for preparation of Polymerizable macromer of molecular weight ranging between 700 Daltons to 1,00,000 Daltons having formula (1)
(Formula Removed)

wherein,
R is H, CH3,C2H5,C6H5,
X is between 4 to 10, n is from 3 to 50
Y is N-Acetyl Glucosamine(NAG), mannose, galactose, sialic acid, fructose, ribulose, erythrolose, xylulose, psicose, sorbose, tagatose, glucopyranose, fructofuranose, deoxyribose, galactosamine, sucrose, lactose, isomaltose, maltose, cellobiose, cellulose and amylase, said process comprising steps:
a) dissolving a Polymerizable monomer-spacer conjugate in an organic solvent,
b) adding to the solution of step (a) one or more functional oligomer,
c) adding coupling agent to step (b) reaction mixture to dissolve,
d) allowing to stand the reaction mixture of step (c) at an ambient temperature for 24 hrs to 48 hrs,
e) removing by known methods the unreacted coupling agent from step (d) reaction mixture, and
f) precipitating the Polymerizable macromer from step (e) reaction mixture by adding a non solvent and vacuum drying at room temperature to obtain the polymerizable macromers.
In one of the embodiment of the present invention the monomer spacer conjugate has general formula (5) as given below which has been claimed in our co-pending application 02994delnp2006 entitled'Oligomer and preparation thereof. (Formula Removed)


Where in, R is H, CH3, C2H5, C6H5, X may be between 4 to 10.
In another embodiment of the present invention the monomer-spacer conjugate is having a
reactive site for bonding exemplified by COOH or NH2
In yet another embodiment of the present invention the organic solvent is selected from
the group consisting of dimethyl formamide, tetra hydro furan or di-methyl sulfoxide used
to dissolve the monomer-spacer conjugate and functional oligomer
In still another embodiment of the present invention the functional oligomer used is
selected from polymethacryloyl NAG or polyacryloyl NAG or poly vinyl benzyl NAG.
In still further embodiment of the present invention the coupling agent used is selected
from the group consisting di Cyclohexyl Carbodiimide (DCC), 1-Cyclohexyl 3-(2-
Morpholinoethyl) Carbodiimide metho-p-toluenesulfonate (CMC), l-Ethyl-3-(3-
Dimethylamino-propyl) Carbodiimide (EDC).
In another embodiment of the present invention the molar ratio of coupling agent to
functional oligomer used is minimum 1:1 for condensation of polymerizable monomeric
spacer conjugate.
Yet another embodiment of the present invention the non solvent used to precipitate the
polymerizable macromers is selected from the group consisting of acetone, diethyl ether or
hexane.
Yet another embodiment of the present invention polymerizable macromer along with
NAG enhances the binding constant Kb 930 times higher than NAG alone.
Yet another embodiment of the present invention polymerizable macromer reduce
inhibition of lysozyme IsomM more than 27000 times
Yet another embodiment of the present invention binding (Imax) of Polymerizable
macromer enhances in the range of 55 to 95.
A still further embodiment of the present invention of a polymerizable macromer as
obtained by said process comprises multiple ligands.
A further embodiment of the present invention polymerizable macromers containing
ligands reported herein are effective at very low concentration, which is advantage when
the ligands under consideration are expensive e.g. sialic acid.
Yet another embodiment of the present invention of a polymerizable macromer as
obtained by said process comprises multiple ligands with various carbohydrates including
NAG.
Yet another embodiment of the present invention multiple ligand contains NAG are stable,
water soluble, resistant to degradation and free from microbial contamination which is an
advantage over the natural polymers such as chitin and chitosan.
Yet another embodiment of the present invention wherein multiple ligands bind
simultaneously multiple sites of the enzyme and disease causes virus thereby enhancing
inhibitory effect.
Yet another embodiment of the present invention wherein polymerizable macromer
containing multiple ligand interact with multiple receptors to enhance the binding of
lysozyme or virus and biomolecules and thereby enhancing the inhibition.
Yet another embodiment feature of the present invention to provide more stable
polymerizable macromers for the interactions with biomolecules than the natural polymers
such as chitin and chitosan containing W-Acetyl Glucosamine
Yet another embodiment of the present invention comprises conjugation of the monomeric
spacer with polyvalent ligand to provide greater accessibility to the ligand conjugate for
binding with receptor molecule.
Still another embodiment of the present invention wherein polymerizable macromer
copolymerized with the co-monomers and provide copolymers containing polyvalent
ligand.
Still another embodiment of the present invention wherein polymerizable macromer used
in selective separation of biomolecules from solution by virtue of their ability to bind
selectively to the substrate.
Still another embodiment of the present invention wherein the molecular weight of the
polymerizable macromer is in the range of 700 Daltons to
1, 00,000 Daltons.
Yet another embodiment of the present invention wherein polymerizable macromer useful
for application in medicine and biotechnology.
Yet another embodiment of the present invention wherein polymerizable macromer used
in threapeutical agents, in affinity separations and immunoassays.
Yet another embodiment of the present invention presence of multiple ligands in the
polymer backbone will enhance binding to the virus and biomolecules such as influenza
virus, rotavirus, and wheat germ agglutinin.
Yet another embodiment of the present invention of the polymerizable macromers
containing NAG in the form of polyvalent oligomers are more efficient than NAG itself
evidenced by higher values of Kb and lower values of 15o.
Yet another embodiment of the present invention is the method used for estimation of the
relative inhibition in terms of 150 mM and I max mM values.
In yet another embodiment of the present invention the binding constant (Kb) between
lysozyme and the functional polyvalent polymer containing NAG is estimated using a
fluorescence method.
Yet another embodiment of the present invention wherein polymerizable macromer has
binding constant value Kb 930 times higher as compared to N-Acetyl Glucosamine.
Yet another embodiment of the present invention wherein polymerizable macromer having
inhibition of lysozyme in terms of I50mM more than 27000 times lower as compare to NAcetyl
Glucosamine.
Yet another embodiment of the present invention wherein polymerizable macromer having
inhibition of lysozyme in terms of Imax 70 times higher as compared to N-Acetyl
Glucosamine.
EXAMPLES
The process for the preparation of the polymerizable macromers of the present invention is
described herein below with reference to examples which are illustrative only and should
not be construed to limit the scope of the present invention in any manner whatsoever.
Example 1
This example describes the process for the preparation of Methacryloyl 6-Amino Caproic
Acid (M.Ac.6-ACA)
250 ml capacity beaker was equipped with dropping funnel and pH meter. 13.16 gm
6ACA, 4 gm. sodium hydroxide and 80 ml. water was stirred continuously at 5 ° C. on a
magnetic stirrer. Nine milliliter of Methacryloyl Chloride in 10 ml dichloromethane was
added drop wise to the above solution. The pH of reaction mixture was maintained at 7.5
by the addition of 10 M NaOH solution. Unreacted acid chloride was extracted in 100 ml
ethyl acetate. The clear aqueous solution was acidified to pH 5.0 using concentrated HC1
and the product was extracted in ethyl acetate (3 x 100 ml). The organic layer was dried on
anhydrous sodium sulfate and concentrated under vacuum. The viscous liquid was added
to 500 ml petroleum ether. The solid product was obtained and vacuum dried for 48 hrs.
Example 2
This example describes the process for the preparation of Macromers: Acryloyl 6-Amino
Caproyl poly. Acryloyl W-Acetyl Glucosamine ( Ac. 6 ACA.P.Ac.NAG )
Ac.6 Amino Caproic Acid (0.122 gm.,0.00066 M) and P. Ac. W-Acetyl Glucosamine (2
gm,0.00066 M)were taken in a 100 ml flask, DMF(25 ml) was added and stirred
continuously to obtain a clear mixture. Di Cyclohexyl Carbodiimide (0.136 gm, 0.00066
M) was first dissolved in DMF (5 ml) and added to the mixture dropwise. It was stirred
continuously for 24 hrs. at room temperature. DCU was filtered off and the macromer was
precipitated in acetone, and vacuum dried.
Example 3
This example describes estimation of binding constant (Kb) of monomers, oligomers, and
macromers containing NAG incorporated as monomer and macromer by fluorescence
spectrophotometric method and the enhancement resulting from conjugation with
monomers and monomer containing spacer. The Binding constant Kb is a measure of
affinity between the ligand containing NAG and lysozyme and does not include the steric
contribution.
Fluorescence spectra of lysozyme were recorded on a Perkin Elmer LS-50 B luminescence
spectrophotometer. Excitation frequency was 285 nm. Solutions of lysozyme and NAcetyl
Glucosamine were prepared in 0.066 M phosphate buffer pH 6.2, containing
0.0154 M sodium chloride and 0.008 M sodium azide. 0.1 milliliter of lysozyme 80 ^g /ml
was mixed with solution containing different ligand concentration in a 2 ml capacity 10
mm square quartz cells maintained at 18 ° C. Phosphate buffer was added to make the
volume to 2 ml. The fluorescence intensities of the solutions were measured, relative to
the solutions containing enzymes and buffer mixtures of the identical concentrations
reference. The relative fluorescence intensity of lysozyme saturated with solution
containing different ligand concentration, Foe, was extrapolated from the experimental
values by plotting I/ (F0-F) against 1/[S] where F is the measured fluorescence of a
solution containing enzyme with given substrate concentration [S] and F0 is the
fluorescence of the solution of enzyme alone (Chipman et al., J. Biol. Chem., 242-19,
4388-4394,1967). The highest concentration of polymer substrates was used when enzyme
was saturated more than 85 %.
Table 1 : Binding Constants (Kb) for Monomers, Oligomers and Macromers Containing
(Table Removed)

The binding constant for oligomers and macromers are summarized in Table 1 . wherein
oligomer of molecular weight has binding constant 5.3 x 10 5, which shows 988 folds
enhancement to NAG (5.24 xlO 2).
On incorporation of spacer and polyvalent oligomer the binding constant for macromers is
increased to 5.62 x 105 ,almost 930 times compared to JV-Acetyl Glucosamine.
Example 4
This example describes the estimation of inhibition of lysozyme by monomers, oligomers
and macromer. I50 denotes the concentration of the ligand containing NAG at which 50 %
of the highest achievable inhibition is achieved. Imax denotes the ligand concentration at
which the maximum inhibition is achieved.
Micrococcus lysodeikticus is a substrate for the enzyme lysozyme. Relative binding of
macromers was estimated by using a procedure reported by Neuberger and Wilson (1967).
1.5 % w/v stock solutions of macromer was prepared in 0.0066 M phosphate buffer pH 6.2
containing 0.0154 m sodium chloride and 0.008 M sodium azide. One milliliter of stock
solution containing different ligand concentration was mixed with 1.6 ml of 78 u£/ml of
Micrococcus lysodeikticus in a 3-ml capacity glass cuvette. The mixture was incubated for
5 minutes at 20 ° C. To this mixture 0.1 ml of lysozyme (27 |ig/ml) was added and mixed
thoroughly. The relative absorbance at 450 nm (A 450) was recorded for 30 seconds. A
blank reading without the ligand was noted and the change in the absorbance per second
was calculated. Then relative inhibition was calculated.
Table 2 : Estimation of Relative Inhibition of Lysozyme by Monomers, Oligomers and
Macromers Containing NAG
(Table Removed)

The relative inhibition of lysozyme in terms of I so. has decreased to 0.0026 for oligomer
of molecular weight 638 and is almost 28000 folds lower to NAG. The inhibition for
macromer is 0.00268 mM, which shows more than 27,000 folds decrease to NAG (74
mM).
The I max increased from 55.29 to 94.1 (Table 2).
The advantages of the present invention are as follows :
1. The polymerizable macromers reported here comprise polyvalent ligands and exhibit
enhanced interactions.
2. In addition such ligands have higher molecular weight and demonstrate greater
efficiency through steric exclusion.
3. The polymerizable macromers have greater water solubility, stability, and
susceptibility to enzyme from hydrolysis.
4. The enhancement in binding due to polyvalent interactions arise from the
conformational flexibility of the polyvalent oligomers with the biological receptors.
5. The method of preparation of polymerizable macromers containing polyvalent ligands
is simple.
6. The polymerizable macromers containing polyvalent NAG are effective even at low
ligand concentration than monomer itself.
7. The polymerizable macromers contain functional reactive groups and can be
copolymerized with other comonomers.
8. The polymerizable macromers can bind simultaneously to multiple binding sites of
biomolecules thereby exhibiting enhanced interactions.




We Claim:
1. Copolymers having formula (1)
(Formula Removed)
Formula (1)
wherein,
R is H, CH3, C2H5; RI is H, CH3, C2H5, C6H5;R2 is H, CH3, C2H5, C6H5; X is between 4-
10; m is from 3 to 500; n is from 2 to 50; p is form 2 to 50; L is OH, NH2, OCH3,
NHCH(CH3)2; and
Y is N-Acetyl Glucosamine (NAG), mannose, galactose, sialic acid, fructose, ribulose,
erythrolose, xylulose, psicose, sorbose, tagatose, glucopyranose, fructofuranose,
deoxyribose, galactosamine, sucrose, lactose, isomaltose, maltose, cellobiose, cellulose
and amylose.
2. A copolymer claimed in claim 1, wherein the molecular weight of the
copolymers is in the range of 1,000 to 2,00, 000 daltons.
3. A copolymer, as claimed in claim 1, wherein the ratio of polymeri\zable monomer
to polymeric micromere is in the range of 2:98 to 98.2.
4 A process of preparing copolymers of formula 1,
(Formula Removed)
Formula (1)
Wherein,
R is R is H, CH3, C2H5; Rj is H, CH3, C2H5, C6H5;R2 is H, CH3, C2H5, C6H5; X is
between 4-10; m is from 3 to 500; n is from 2 to 50p; is form 2 to 50; L is OH, NH2,
OCH3, NHCH(CH3)2; and
Y is N-Acetyl Glucosamine (NAG), mannose, galactose, sialic acid, fructose, ribulose,
erythrolose, xylulose, psicose, sorbose, tagatose, glucopyranose, fructofuranose,
deoxyribose, galactosamine, sucrose, lactose, isomaltose, maltose, cellobiose, cellulose
and amylase, said process comprising steps of:
(a) dissolving a polymerizable macromer in a solvent followed by stirring to obtain a
clear reaction mixture,
(b) Purging nitrogen in the reaction mixture in the range of 10 minutes to 45 minutes,
(c) Adding the reaction mixture of step (b) to an initiator containing an accelerator,
(d) Allowing the reaction mixture of step (c ) to copolymerize for about 2 to 13 hrs at
a temperature in the range of 25°C to 65°C,
(e) Precipitating the copolymer of step (d) by adding a solvent, and if desired,
(f) Drying the precipitated copolymer of step (e) by vacuum at room temperature to
obtain the copolymer
5. A process as claimed in claim 7, wherein the polymerizable monomer in the step (a) is selected from a group comprising of acrylic acid, methacrylic acid, methacryloyl chloride, acrylamide, N-isopropyl acrylamide (NIPA), 2-acrlamido-2-methylpropanesulphonic acid (AMPS) methacrylate, acryloyl chloride, acryloyl morpholine, vinylpyrrolidone or styrene.
6. A process as claimed in claim 7, wherein the solvent in the step (a) is selected from a group comprising of water, methanol, ethanol or isobutyl alcohol.
7. A process as claimed in claim 7, wherein the purging the nitrogen in the reaction
mixture in the step (b) to about 30 minutes.
8. A process as claimed in claim 7, wherein the initiator in the step (c) is selected
from a group comprising of Ammonium Per Sulphate (PS), Potassium Per
Sulphate (KPS), or Azobis Iso Butyro Nitril (AIBN).
9. A process as claimed in claim 7, wherein the accelerator in the step (C) is N, N, N',
N" Tetramethyl Ethylene Diamine (TEMED). 10. A process as claimed in claim 7, wherein the copolymerization in the step (d) is
carried out at temperature in the range of 30 to 60 C. 11. A process as claimed in claim 7, wherein the solvent in the step (e) is selected
from group comprising of diethyl ether, acetone, hexane or hot water. 12.A process as claimed in claim 7, wherein the molecular weight of the copolymers
is in the range of 1,000 to 2,00,000 daltons.
13. A process as claimed in claim 7, wherein the ratio of polymerizable monomer to
polymeric macromere is in the range of 2:98 to 98;2
14.Copolymers and preparation thereof substantially as herein described with
reference to examples accompanying this specification.



Documents:

1456-DEL-2003-Abstract-(01-10-2008).pdf

1456-del-2003-abstract.pdf

1456-DEL-2003-Claims-(01-10-2008).pdf

1456-DEL-2003-Claims-(14-11-2008).pdf

1456-del-2003-claims.pdf

1456-DEL-2003-Correspondence-Others-(01-10-2008).pdf

1456-DEL-2003-Correspondence-Others-(14-11-2008).pdf

1456-del-2003-correspondence-others.pdf

1456-DEL-2003-Description (Complete)-(01-10-2008).pdf

1456-del-2003-description (complete).pdf

1456-del-2003-form-1.pdf

1456-del-2003-form-18.pdf

1456-DEL-2003-Form-2-(01-10-2008).pdf

1456-del-2003-form-2.pdf

1456-DEL-2003-Form-3-(01-10-2008).pdf

1456-del-2003-form-3.pdf


Patent Number 233301
Indian Patent Application Number 1456/DEL/2003
PG Journal Number 13/2009
Publication Date 27-Mar-2009
Grant Date 28-Mar-2009
Date of Filing 24-Nov-2003
Name of Patentee COUNCIL OF SCIENTIFIC & INDUSTRIAL RESEARCH
Applicant Address RAFI MARG, MEW DELHI-110 001, INDIA.
Inventors:
# Inventor's Name Inventor's Address
1 JAYANT JAGANNATH KHANDARE NATIONAL CHEMICAL LABORATORY, PUNE 411008, MAHARASHTRA, INDIA.
2 MOHAN GOPALKRISHNA KULKARNI NATIONAL CHEMICAL LABORATORY, PUNE 411008, MAHARASHTRA, INDIA.
PCT International Classification Number C081 37/00
PCT International Application Number N/A
PCT International Filing date
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 NA