Title of Invention

"A POLYPEPTIDE COMPRISING AN AMINO ACID SEQUENCE"

Abstract A polypeptide comprising an amino acid sequence at least 90% identical to amino acids 8-113 of SEQ ID NO: 1. wherein the polypeptide includes at least one amino acid substitution selected from the group consisting of; (a) an amino acid other than arginine at the position corresponding to position 14 in SEQ ID NO: 1; (b) an amino acid other than arginine at the position corresponding to position 39 in SEQ ID NO: 1; (c) an amino acid other than arginine at the position corresponding to position 68 in SEQ ID NO: 1; and (d) an amino acid other than asparagine at the position corresponding to position 95 in SEQ ID NO: 1, wherein the polypeptide, when dimerized, binds to Glial-Derived Neurotrophic Factor Family Receptor Alpha-3 (GFRα3), and wherein the at least one amino acid substitution identified in (a)-(d) introduces one or more sites at which a polymer can be attached to the polypeptide.
Full Text POLYMER CONJUGATES OF NEUBLASTIN AND
METHODS OF USING SAME
FIELD OF THE INVENTION
The invention relates generally to polypeptides and more particularly to modified
neurotrophic polypeptides and methods of using these modified polypeptides.
BACKGROUND OF THE INVENTION
Neurotrophic factors are naturally-occurring proteins that promote survival, maintain
phenotypic differentiation, prevent degeneration, and enhance the activity of neuronal cells
and tissues. Neurotrophic factors are isolated from neural tissue and from non-neural tissue
that is innervated by the nervous system, and have been classified into functionally and
structurally related groups, also referred to as families, superfamilies, or subfamilies. Among
the neurotrophic factor superfamilies are the fibroblast growth factor, neurotrophin, and
transforming growth factor-^ (TGF-(3) superfamilies. Individual species of neurotrophic
factors are distinguished by their physical structure, their interaction with their cognate
receptors, and their affects on various types of nerve cells. Classified within the TGF-(3
superfamily are the glial cell line-derived neurotrophic factor (GDNF) ligands, which include
GDNF, persephin (PSP) and neurturin (NTN).
The ligands of the GDNF subfamily have in common their ability to induce signaling
through the RET receptor tyrosine kinase. These three ligands of the GDNF subfamily differ
in their relative affinities for a family of neurotrophic receptors, the GFRa receptors.
A recently described neurotrophic factor is "neublastin," or "NBN." Neublastin is
classified within the GDNF subfamily because it shares regions of homology with other
GDNF ligands and because of its ability to bind to, and activate, RET. Unlike other GDNF
ligands, neublastin is highly selective for the GFRoc3-RET receptor complex. In addition,
NBN contains unique subregions in "its arnino acid sequence.
Unfortunately, neublastin is cleared rapidly by the body. This rapid clearance can
frustrate the use of neublastin in therapeutic applications. Thus, a need exists to identify
neublastin variants that have increased bioavailability.
Summary of the Invention
The present invention is based in part on the discover)' of novel forms of neublastin
that show enhanced pharmokinetic and bioavailability properties in vivo. These novel forms
include variant neublastin polypeptides conjugated to polymeric molecules.
In one aspect, the invention features a variant neublastin polypeptide, or mutein
neublastin polypeptide, that includes an amino acid sequence having one or more amino acid
substitutions at solvent-exposed positions of the mature neublastin dimer. The present
substitutions introduce into the native neublastin polypeptide one or more sites at which
substances, such as naturally occurring or synthetic polymers, can be attached to the
polypeptide so as to enhance its solubility, and hence its" bioavailability, in vivo. Preferably,
the present variant polypeptides include an amino acids sequence at least 70% identical to
amino acids 8-113 of SEQ ED NO:1. The variant neublastin polypeptide includes one or
more amino acid substitutions in which an amino acid other than arginine occurs at position
14 in the amino acid sequence of the variant polypeptide, an amino acid other than arginine at
position 39 occurs in the amino acid sequence of the variant polypeptide, an amino acid other
than arginine at position 68 occurs in the variant polypeptide; or an amino acid other than
asparagine at position 95 occurs in the variant polypeptide, when the positions of the amino
acids are numbered in accordance with the polypeptide sequence of SEQ ID NO: 1.
As used herein, "wild-type neublastin" or "wt-NBN" refers to a naturally-occurring or
native neublastin polypeptide sequence, such as that of rat, mouse, or human neublastin (see,
e.g., SEQ ID NO: 2, 3, or 4). Specific variant neublastin polypeptides are referred to herein
as "NBN-XiNiXa" or "XiNiXo-NBN" wherein X] refers to an amino acid of a wild-type
neublastin polypeptide, NI refers to the numerical position of the Xj amino acids in the
sequence, as numbered according to SEQ ID NO: 1. X.2 refers to an amino acid substituted
for the wild-type amino acid at the indicated numerical position in the sequence. Thus, for
example, NBN-N95K identifies the variant neublastin polypeptides in which the asparagine
at position 95 is replaced by a lysine.
The variant neublastin polypeptide can be provided as a multimeric polypeptide. For
example, the variant neublastin polypeptide can be provided as a dimer that includes at least
one variant neublastin polypeptide. In some embodiments, the dimer is a homodimer of
variant neublastin polypeptides. In other embodiments, the dimer is a heterodimer that
includes one variant neublastin polypeptide and one wild-type neublastin polypeptide. Other
dimers may include two different variant neublastin polypeptide forms.
In some embodiments, the variant neublastin polypeptide includes amino acids 1-7 of
SEQ ID NO: 1 in addition to amino acids 8-113.
In preferred embodiments, the variant neublastin polypeptide, when dimerized, binds
GFRttS. In additional preferred embodiments, the variant neublastin polypeptide, when
dimerized, stimulates tyrosine phosphorylation of a RET polypeptide, either on its own or
when bound to GFRa3.
In still other preferred embodiments, the variant neublastin polypeptide, when
dimerized, enhances neuron survival, e.g., enhances survival of a sensory neuron.
In still other preferred embodiments, the variant neublastin polypeptide, when
dimerized, normalizes pathological changes of a neuron, such as a sensory neuron.
In yet further preferred embodiments, the variant'neublastin polypeptide, when
dimerized, enhances survival of a neuron, e.g., an autonomic neuron, or a dopaminergic
neuron.
In some embodiments, the variant polypeptide includes two, three, or more of the
amino acid substitutions selected from the group consisting of an amino acid other than
arginine at position 14 in the amino acid sequence of the variant polypeptide, an amino acid
other than arginine at position 39 in the amino acid sequence of the variant polypeptide, an
amino acid other than arginine at position 68 of the variant polypeptide, and an amino acid
other than asparagine at position 95 of the variant polypeptide.
In preferred embodiments, the amino acid at one or more of the positions, 14, 39, 68,
and 95 is lysine.
Preferably, amino acids 8-94 and 96-113 of the variant neublastin polypeptide are at
least 90% identical to amino acids 8-94 and 96-113 of SEQ ID NO: 1. More preferably, the
amino acids sequences are at least 95% identical thereto. Most preferably, the amino acid
sequence of the variant neublastin polypeptide includes the amino acid sequence of a
naturally occurring rat, human or mouse neublastin polypeptide at amino acids 8-94 and 96-
113 of the variant neublastin polypeptide. For example, amino acids 8-94 and 96-113 of the
variant neublastin polypeptide can include the amino acid sequence of amino acids 8-94 and
96-113 of SEQ ID NO:2, SEQ ID NO:3 or SEQ ID NO: 4.
Also provided by the invention is a fusion protein or polypeptide that includes a
variant neublastin polypeptide or a wild-type neublastin polypeptide, or a protein that is a
dimer of two neublastin fusion proteins. Neublastin fusion proteins also have enhanced
phannacokinetic and bioavailability properties in vivo.
In another aspect, the invention provides a nucleic acid molecule encoding a variant
neublastin polypeptide. The nucleic acid encoding the variant neublastin polypeptide is
preferably provided in a vector, e.g., an expression vector. A variant neublastin nucleic acid,
or a vector including the same, can be provided in a cell. The cell can be, e.g., a mammalian
cell, fungal cell, yeast cell, insect cell, or bacterial cell. A preferred mammalian cell is a
Chinese hamster ovary cell ("CHO cell").
Also provided by the invention is a method of making a variant neublastin
polypeptide, by culturing a cell containing a nucleic acid encoding a variant neublastin
nucleic acid under conditions allowing for expression of a variant neublastin polypeptide. If
desired, the variant neublastin polypeptide can then be recovered. The invention further
includes the variant 'neublastin polypeptide produced by the cell. Similar nucleic acids,
vectors, host cells, and polypeptide production methods are disclosed herein for the fusion
proteins (such as the neublastin-seram albumin fusion proteins) of this invention.
Also provided by the invention is a composition that includes a neublastin polypeptide
or variant neublastin polypeptide coupled to a non-naturally occurring polymer. The variant
neublastin polypeptide in the composition preferably includes an amino acid sequence at least
70% identical to amino acids 8-113 of SEQ ID NO:1, provided that the variant neublastin
polypeptide includes one or more of the amino acid substitutions selected from die group
consisting of an amino acid other than arginine at position 14 in the amino acid sequence of
the variant polypeptide, an amino acid other than arginine at position 39 in the amino acid
sequence of the variant polypeptide, an amino acid other than arginine at position 68 of the
variant polypeptide, and an amino acid other than asparagine at position 95 of the variant
polypeptide, wherein the positions of the amino acids are numbered in accordance with the
polypeptide sequence of SEQ ID NO:1.
In preferred embodiments, the polymer comprises a polyalkylene glycol moiety, e.g.,
polyethylene glycol moiety (PEG).
In preferred embodiments, the polyalkylene glycol moiety is coupled to an amine
group of the neublastin polypeptide, or a lysine in a variant neublastin polypeptide.
Coupling can occur via a N-hydroxylsuccinimide (NHS) active ester. The active ester
can be, e.g., PEG succinimidyl succinate (SS-PEG), succinimidyl butyrate (SPB-PEG), or
succinimidyl propionate (SPA-PEG).
The polyalkylene glycol moiety can be, e.g., carboxymethyl-NHS, norleucine-NHS,
SC-PEG, tresylate, aldehyde, epoxide, carbonylimidazole, or PNP carbonate.
In some embodiments, the polyalkylene glycol moiety is coupled to a cysteine group
of the neublastin polypeptide or variant neublastin polypeptide. For example, coupling can
occur via a maleimide group, a vinylsulfone group, a haloacetate group, and a thiol group.
In some embodiments, the neublastin polypeptide or variant neublastin polypeptide in
the composition is glycosylated. When the neublastin polypeptide or variant polypeptide is
glycosylated, the polymer can be coupled to a carbohydrate moiety of the glycosylated
neublastin polypeptide or variant neublastin polypeptide. For example, the polymer can be
coupled to the glycosylated neublastin polypeptide or variant neublastin polypeptide
following oxidation of a hydrazole group or an amino group of the glycosylated neublastin
polypeptide or variant neublastin polypeptide, or oxidation of a reactive group of the
polymer.
In various embodiments, the neublastin polypeptide or variant neublastin polypeptide
comprises one, two, three, or four PEG moieties.
In preferred embodiments, the neublastin polypeptide, variant neublastin polypeptide
or polymer conjugate has a longer serum half-life relative to the half-life of the polypeptide
or variant polypeptide in the absence of the polymer.
In preferred embodiments, the neublastin polypeptide, variant neublastin polypeptide
or polymer conjugate in the complex has a physiological activity selected from the group
consisting of: GFRa3 binding, RET activation, normalization of pathological changes of a
neuron, or enhancing neuron survival.
By "normalization of pathological changes of a neuron" is meant that the present
conjugate induces a change in one or more of the following cellular parameters: expression
levei of a structural protein, a neurotrophic factor receptor, an ion channel, or a
neurotransmitter, or, induces a change in cellular morphology, in each case so as to
substantially restore such parameter to the level thereof in a neuron of the same or similar
phenotype that is unaffected by disease, degeneration, insult, or injury. The normalization of
pathological changes of a neuron can be monitored immunohistochemically, or by assessing
changes in the levels of secreted or shed cellular products, or by assessing in vivo changes in
behavior physiologically attributable to function of the affected neuron(s). For example, in
the case of pathologic changes associated with a neuropathic pain syndrome, pain behaviors
such as hyperalgesia, hypoalgesia, or allodynia, can be monitored.
By "enhancing neuron survival" is meant extending the survival of an affected neuron
beyond the survival period observed in a corresponding neuron affected by the same type of
disease, disorder, insult, or injury but not treated with the neublastin conjugate or fusion
protein of this invention.
In some embodiments, the polymer is coupled to the polypeptide at a site on the
neublastin that is an N terminus. In some embodiments, the polymer is coupled to the
polypeptide at a site in a non-terminal amino acid of the neublastin polypeptide or variant
neublastin polypeptide.
In preferred embodiments, the polymer is coupled to a solvent exposed amino acid of
the neublastin polypeptide or variant neublastin polypeptide.
hi preferred embodiments, the polymer is coupled to the neublastin polypeptide or
variant neublastin polypeptide at a residue selected from the group consisting of the amino
terminal amino acid of the varianf polypeptide, position 14 in the amino acid sequence of the
neublastin polypeptide or variant neublastin polypeptide, position 39 in the amino acid
sequence of the neublastin polypeptide or variant neublastin polypeptide, position 68 in the
amino acid sequence of the neublastin potypeptide or variant neublastin polypeptide, and
position 95 in the amino acid sequence of the neublastin polypeptide or variant polypeptide.
Also provided by the invention is a pharmaceutical composition comprising a
physiologically acceptable vehicle containing or having dispersed therein a neublastin
polypeptide, a variant neublastin polypeptide, or a conjugate of the present invention.
In a further aspect, the invention includes a stable, aqueously soluble conjugated
neublastin polypeptide or variant neublastin polypeptide complex comprising a neublastin
polypeptide or variant neublastin polypeptide coupled to a polyethylene glycol moiety,
wherein the neublastin polypeptide or variant neublastin polypeptide is coupled to the
polyethylene glycol moiety by a labile bond. In some embodiments, the labile bond is
cleavable by biochemical hydrolysis, proteolysis, or sulfhydryl cleavage. In preferred
embodiments, the labile bond is cleavable under in vivo conditions.
Also provided by the invention is a method for making a modified neublastin
polypeptide that has prolonged activity, in vitro or in vivo, relative to a wild-type neublastin
by providing a neublastin polypeptide or variant neublastin polypeptide, and coupling the
polypeptide or modified variant neublastin polypeptide to a non-naturally occurring polymer
moiety, thereby forming a coupled polymer neublastin polypeptide composition.
In a further aspect, the invention provides a method of treating or preventing a
nervous system disorder in a subject (such as a human), by administering to a subject in need
thereof a therapeutically effective amount of a variant neublastin polypeptide, a composition
containing a neublastin polypeptide or variant neublastin polypeptide coupled to a polymer,
or a complex that includes a stable, aqueously soluble conjugated neublastin polypeptide or
variant neublastin polypeptide complex comprising a neublastin polypeptide or variant
neublastin polypeptide coupled to a polyethylene glycol moiety.
Preferably, the nervous system disorder is a peripheral nervous disorder, such as a
peripheral neuropathy or a neuropathic pain syndrome. Humans are preferred subjects for
treatment.
Administration can be, e.g., systemic or local.
Unless otherwise defined, all technical and scientific terms used herein have the same
meaning as commonly understood by one of ordinary skill hi the art to which this invention
belongs. Although methods and materials similar or equivalent to those described herein can
be used in the practice or testing of the invention, suitable methods and materials are
described below. All publications, patent applications, patents, and other references
mentioned herein are incorporated by reference in their entirety. In the case of conflict, the
present specification, including definitions, will control. In addition, the materials, methods,
and examples are illustrative only and not intended to be limiting.
Other features and advantages of the invention will be apparent from the following
detailed description and claims.
DETAILED DESCRIPTION OF THE INVENTION
The invention provides novel variant neublastin polypeptides that can be modified to
enhance their pharmokinetic and bioavailability properties. Preferred variant neublastin
polypeptides have altered amino acid sequences which facilitate coupling to a polymer agent
such as a polyalkylene glycol polymer.
Variant Neublastin Polvpeptides
The invention provides neublastin polypeptides that have variant amino acid
sequences with respect to a wild-type neublastin polypeptide sequence. Amino acid
sequences of human and mouse neublastin polypeptides are disclosed in WOOO/01815.
Examples of variant neublastin polypeptides according to the invention are presented in Table
1.
Preferably, the altered residues in the variant neublastin polypeptide are chosen to
facilitate coupling of a polymer such as a polyalkylene glycol polymer at the location of the
modified amino acid. Preferred sites of modification of a neublastin polypeptide are those at
solvent accessible regions in the neublastin polypepdde. Such sites can be chosen based on
inspection of the crystal structure of the related neurotrophic factor, GDNF, whose crystal
structure is described in Nat. Struct. Biol. 4:435-38, 1997. Sites can also be chosen based on
the structural-functional information provided for persephin/neublastin chimeric proteins.
These chimeras are described in J. Biol. Chem. 275:3412-20,2000. An exemplary listing of
solvent accessible or surface exposed neublastin amino acids identified through this
methodology is as set forth in Table 2.
The invention includes a variant neublastin polypeptide that includes an amino acid
sequence that is at least 70% identical to amino acids 8-113 of SEQ ID NO: 1, which is shown
in Table 1. In some embodiments, one or more of the arginines at position 14, position 39,
position 68, or the asparagine at position 95, in the amino acid sequence of the polypeptide, is
replaced by an amino acid other than arginine or asparagine. Preferably, the wild-type type
amino acid is replaced with lysine or cysteine.
(Table Removed) Table 2 provides a list of residues and numbers in human neublastin that are expected
to be surface exposed. Surface exposed residues were determined by examining the structure
of the rat GDNF dimer formed by chains A and B (PDB code 1AGQ) and determining
whether a residue was on the surface of the structure. This structure was then compared to a
sequence alignment of GDNF and neublastin in Baloh et al., Neuron, vol 21, pg 1291, 1998
to determine the proper residues in neublastin. The numbering scheme is that shown in Table
1.
(Table Removed)n/a indicates that the residues are not present in the structure of GDNF. This is either because
of construct design, flexible regions, or inserts in neublastin relative to GDNF (residues 68-
71).
indicates the residues are buried and not on the surface or are cysteine residues involved
in disulfide bonds. As this protein is a cysteine knot, a great majority of the residues are
on the surface.
+ indicates that this residue is surface exposed in the GDNF structure, and therefore is
presumed to be surface exposed in neublastin, although the loop containing residues 66-75 is
visible in only one of the GDNF monomers (presumably flexible). This loop also contains a
4 residue insert in neublastin relative to GDNF.
As used herein, "identity" and "homologous" or "homology" are used
interchangeably and refer to the sequence similarity between two polypeptides, molecules or
between two nucleic acids. When a position hi both of the two compared sequences is
occupied by the same base or amino acid monomer subunit (for instance, if a position in each
of the two DNA molecules is occupied by adenine, or a position in each of two polypeptides
is occupied by a lysine), then the respective molecules are homologous at that position. The
percentage homology between two sequences is a function of the number of matching or
homologous positions shared by the two sequences divided by the number of positions
compared x 100. For instance, if 6 of 10 of the positions in two sequences are matched or are
homologous, then the two sequences are 60% homologous. By way of example, the DNA
sequences CTGACT and CAGGTT share 50% homology (3 of the 6 total positions are
matched). Generally, a comparison is made when two sequences are aligned to give
maximum homology. Such alignment can be provided using, for instance, the method of
Needleman et al., J. Mol Biol. 48: 443-453 (1970), implemented conveniently by computer
programs such as the Align program (DNAstar, Inc.). "Similar" sequences are those which,
when aligned, share identical and similar amino acid residues, where similar residues are
conservative substitutions for, or "allowed point mutations" of, corresponding amino acid
residues in an aligned reference sequence. In this regard, a "conservative substitution" of a
residue in a reference sequence is a substitution by a residue that is physically or functionally
similar to the corresponding reference residue, e.g., that has a similar size, shape, electric
charge, chemical properties, including the ability to form covalent or hydrogen bonds, or the
like. Thus, a "conservative substitution variant" sequence is one which differs from a
reference sequence or a wild-type sequence in that one or more conservative substitutions or
allowed point mutations are present.
In preferred embodiments, a polypeptide according to the invention is 80 %, 85%,
90%, 95%, 98% or 99% identical to amino acids 8-113 of SEQ ID NO:1. In some
embodiments, the amino acid sequence of the variant neublastin polypeptide includes the
amino acid sequence of a naturally occurring rat, human or mouse neublastin polypeptide at
amino acids 1-94 and 96-113 of the variant neublastin pdlypeptide, e.g., the polypeptide has
the amino acid sequence of SEQ ID NOs: 2, 3, or 4 at these positions.
A variant neublastin polypeptide differing in sequence from those disclosed in SEQ
ID NOs: 1-4 may include one or more conservative amino acid substitutions. Alternatively,
or in addition, the variant neublastin polypeptide may differ by one or more non conservative
amino acid substitutions, or by deletions or insertions. Preferably, the substitutions,
insertions or deletions do not abolish the isolated protein's biological activity.
Conservative substitutions typically include the substitution of one amino acid for
another with similar characteristics such as substitutions within the following groups: valine,
alanine and glycine; leucine, valine, and isoleucine; aspartic acid and glutamie acid;
asparagine and glutamine; serine, cysteine, and threonine; lysine and arginine; and
phenylalanine and tyrosine. The non polar hydrophobic amino acids include alanine, leucine,
isoleucine, valine, proline, phenylalanine, tryptophan and metnionine. The polar neutral
amino acids include glycine, serine, threonine, cysteine, tyrosine, asparagine and glutamine.
The positively charged (basic) amino acids include arginine, lysine and histidine. The
negatively charged (acidic) amino acids include aspartic acid and glutamie acid. Any
substitution of one member of the above-mentioned polar, basic or acidic groups by another
member of the same group can be deemed a conservative substitution.
Other substitutions can be readily identified by workers of ordinary skill. For
example, for the amino acid alanine, a substitution can be taken from any one of D-alanine,
glycine, beta-alanine, L-cysteine and D-cysteine. For lysine, a replacement can be any one of
D-lysine, arginine, D-arginine, homo-arginine, methionine, D-methionine, ornithine, or Dornithine.
Generally, substitutions in functionally important regions that may be expected to
induce changes in the properties of isolated polypeptides are those in which: (i) a polar
residue, e.g., serine or threonine, is substituted for (or by) a hydrophobic residue, e.g.,
leucine, isoleucine, phenylalanine, or alanine; (ii) a cysteine residue is substituted for (or by)
any other residue; (iii) a residue having an electropositive side chain, e.g., lysine, arginine or
histidine, is substituted for (or by) a residue having an electronegative side chain, e.g.,
glutamic acid or aspartic acid; or (iv) a residue having a bulky side chain, e.g., phenylalanine,
is substituted for (or by) one not having such a side chain, e.g., glycine. The likelihood that
one of the foregoing non-conservative substitutions may alter functional properties of the
protein is also correlated to the position of the substitution with respect to functionally
important regions of the protein: some non-conservative substitutions may accordingly have
little or no effect on biological properties.
Also provided by the invention are multimeric polypeptides that include a variant
neublastin polypeptide. The multimeric polypeptides are preferably provided as purified
multimeric polypeptides. Examples of multimeric complexes include, e.g., dimeric
complexes. The multimeric complex can be provided as a heteromeric or homomeric
complex. Thus, the multimeric complex can be a heterodimeric complex including one
variant neublastin polypeptide and one non-variant neublastin or a heterodimeric complex
including two or more variant neublastin polypeptides.
In some embodiments, the variant neublastin polypeptide binds GFRoc3. Preferably,
binding of the variant neublastin polypeptide stimulates phosphorylation of a RET
polypeptide. To determine whether a polypeptide binds GFRaS, assays can be performed as
- described in WOOO/01815. For example, the presence of neublastin in the media of CHO cell
line supernatants can be described using a modified form of a ternary complex assay
described by Sanicola et al. (Proc. Natl. Acad. Sci. USA, 1997, 94: 6238). In this assay, the
ability of GDNF-like molecules can be evaluated for their ability to mediate binding between
the extracellular domain of RET and the various co-receptors, GFRal, GFRa2, and GFRa3.
Soluble forms of RET and the co-receptors are generated as fusion proteins. A fusion protein
between the extracellular domain of rat RET and placenta! alkaline phosphatase (RET-AP)
and a fusion protein between the extracellular domain of rat GFRoc-1 (disclosed in published
application WO9744356; November 27, 1997, herein incorporated by reference) and the Fc
domain of human IgGl (rGFR(al-Ig) have been described (Sanicola et al., Proc. Natl. Acad.
Sci. USA 1997, 94: 6238).
In some embodiments, the variant neublastin polypeptide enhances survival of a
neuron, or normalizes pathological changes of a neuron or both. Assays for determining
whether a polypeptide enhances survival of a neuron, or normalizes pathological changes of a
neuron, are described in, e.g., WOOO/01815. Preferably, the neuron is a sensory neuron, an
autonomic neuron, or a dopaminergic neuron.
Synthesis and Isolation of Variant Neublastin Polypeptides
Variant neublastin polypeptides can be isolated using methods known in the art.
Naturally occurring neublastin polypeptides can be isolated from cells or tissue sources by an
appropriate purification scheme using standard protein purification techniques. Alternatively,
variant neublastin polypeptides can be synthesized chemically using standard peptide
synthesis techniques. The synthesis of short amino acid sequences is well established in the
peptide art. See, e.g., Stewart, et al.. Solid Phase Peptide Synthesis (2d ed., 1984).
In another embodiment, variant neublastin polypeptides are produced by recombinant
DNA techniques. For example, a nucleic acid molecule encoding a variant neublastin
polypeptide can be inserted into a vector, e.g., an expression vector, and the nucleic acid can
be introduced into a cell. Suitable cells include, e.g., mammalian cells (such as human cells
or Chinese hamster ovary cells), fungal cells, yeast cells, insect cells, and bacterial cells.
When expressed in a recombinant cell, the cell is preferably cultured under conditions
allowing for expression of a variant neublastin polypeptide. The variant neublastin
polypeptide can be recovered from a cell suspension if desired. By "recovered" is meant that
the variant polypeptide is removed from those components of a cell or culture medium in
which it is present prior to the recovery process. The recovery process may include one or
more refolding or purification steps.
Variant neublastin polypeptides can be constructed using any of several methods
known in the art. One such method is site-directed mutagenesis, in which a specific
nucleotide (or, if desired a small number of specific nucleotides) is changed in order to
change a single amino acid (or, if desired, a small number of predetermined amino acid
residues) in the encoded neublastin polypeptide. Those skilled in the art recognize that sitedirected
mutagenesis is a routine and widely-used technique. In fact, many site-directed
mutagenesis kits are commercially available. One such kit is the "Transformer Site Directed
Mutagenesis Bat" sold by Clontech Laboratories (Palo Alto, Calif.).
Practice of the present invention will employ, unless indicated otherwise,
conventional techniques of cell biology, cell culture, molecular biology, microbiology,
recombinant DNA, protein chemistry, and immunology, which are within the skill of the art.
Such techniques are described in the literature. See, for example, Molecular Cloning: A
Laboratory Manual, 2nd edition. (Sambrook, Fritsch and Maniatis, eds.), Cold Spring Harbor
Laboratory Press, 1989; DNA Cloning, Volumes I and II (D.N. Glover, ed), 1985;
Oligonucleotide Synthesis, (M.J. Gait, ed.), 1984; U.S. Patent No. 4,683,195 (Mullis etal.,);
Nucleic Acid Hybridization (B.D. Haines and SJ. Higgins, eds.), 1984; Transcription and
Translation (B.D. Hames and SJ. Higgins, eds.), 1984; Culture of Animal Cells (R.I.
Freshney, ed). Alan R. Liss, Inc., 1987; Immobilized Cells and Enzymes, ERL Press, 1986; A
Practical Guide to Molecular Cloning (IS.Perbal), 1984; Methods in Enzymology, Volumes
154 and 155 (Wu et al, eds), Academic Press, New York; Gene Transfer Vectors for
Mammalian Cells (J.H. Miller and M.P. Calos, eds.), 1987, Cold Spring Harbor Laboratory;
Immunochernical Methods in Cell and Molecular Biology (Mayer and Walker, eds.),
Academic Press, London-,-1987; Handbook of Experiment Immunology,Volumes I-IV (D.M.
Weir and C.C. Blackwell, eds.), 1986; Manipulating the Mouse Embryo, Cold Spring Harbor
Laboratory Press, 1986.
Variant neublastin fusion proteins
If desired, the variant neublastin polypeptide can be provided as a fusion protein.
Fusion polypeptide derivatives of proteins of the invention also include various structural
forms of the primary protein which retain biological activity. As used herein "fusion" refers
to a co-linear, covalent linkage of two or more proteins or fragments thereof via their
individual peptide backbones, most preferably through genetic expression of a
polynucleotide molecule encoding those proteins in the same reading frame (i.e., "in frame").
It is preferred that the proteins or fragments thereof are from different sources. Thus,
preferred fusion proteins include a variant neublastin protein or fragment covalently linked to
a second moiety that is not a variant neublastin. Preferably, the second moiety is derived
from a polypeptide that exists as a monomer, and is sufficient to confer enhanced solubility
and/or bioavailability properties on the neublastin polypeptide.
For example, a "variant neublastin/human serum albumin fusion" is a protein
comprising a variant neublastin polypeptide of the invention, or fragment thereof, whose Nterminus
or C-terminus is linked in frame to a human serum albumin polypeptide (See Syed
et al, Blood, 1997, 89: 3243 and Yeh et al., P.N.A.S. USA 1992, 89:1904) and US Patent
Nos. 5,876,969 and 5,302,697. The term "fusion protein" additionally includes & variant
neublastin chemically linked via a mono- or hetero- functional molecule to a second moiety
that is not a variant neublastin protein and is made de novo from purified protein as described
below.
Neublas tin-serum albumin fusions can be constructed using methods known in the art.
Any of a number of cross-linkers that contain a corresponding amino reactive group and thiol
reactive group can be used to link neublastin to serum albumin. Examples of suitable linkers
include amine reactive cross-linkers that insert a thiol reactive-maleimide. These include,
e.g., SMCC, AMAS, BMPS, MBS, EMCS, SMPB, SMPH, KMUS, or GMBS. Other
suitable linkers insert a thiol reactive-haloacetate group. These include, e.g., SBAP, SIA,
SLAB and that provide a protected or non protected thiol" for reaction with sulfhydryl groups
to product a reducible linkage are SPDP, SMPT, SATA-, or SATP all of which are
commercially available (e.g., Pierce Chemicals). One skilled in the art can similarly
envision with alternative strategies that will link the N-terminus of neublastin with serum
albumin.
It is also envisioned that one skilled in the art can generate conjugates to serum
albumin that are not targeted at the N-terminus of NBN or at the thiol moiety on serum
albumin. If desired, NBN-serum albumin fusions can be generated using genetic engineering
techniques, wherein NBN is fused to the serum albumin gene at its N-terminus, C-terrninus,
or at both ends.
It is further contemplated that any NBN conjugate that results in a product with a '
prolonged half life in animals (including humans) can be generated using a similar strategy.
Other derivatives of variant neublastins include covalent or aggregate conjugates of
variant neublastin or its fragments with other proteins or polypeptides, such as by synthesis in
recombinant culture as additional N-termini, or C-tennini. For example, the conjugated
peptide may be a signal (or leader) polypeptide sequence at the N-terminal region of the
protein which co-translationally or post-translationally directs transfer of the protein from its
site of synthesis to its site of function inside or outside of the cell membrane or wall (e.g., the
yeast alpha -factor leader). Neublastin receptor proteins can comprise peptides added to
facilitate purification or identification of neublastin (e.g., histidine/neublastin fusions). The
amino acid sequence of neublastin can also be linked to the peptide Asp-Tyr-Lys-Asp-Asp-
Asp-Asp-Lys (DYKDDDDK) (Hopp et al.. Biotechnology 6:1204,1988.) The latter sequence
is highly antigenic and provides an epitope reversibly bound by a specific monoclonal
antibody, enabling rapid assay and facile purification of expressed recombinant protein.
This sequence is also specifically cleaved by bovine mucosal enterokinase at the
residue immediately following the Asp-Lys pairing.
Variant neublastin polypeptides conjugated to a polymer
If desired, a single polymer molecule may be employed for conjugation with a
neublastin polypeptide, although it is also contemplated that more than one polymer molecule
can be attached as well. Conjugated neublastin compositions of the invention may find utility
in both in vivo as well as non-in vivo applications. Additionally, it will be recognized that the
conjugating polymer may utilize any other groups, moieties, or other conjugated species, as
appropriate to the end use application. By way of example, it may be useful in some
applications to covalently bond to the polymer a functional moiety imparting UV-degradation
resistance, or antioxidation, or other properties or characteristics to the polymer. As a further
example, it may be advantageous in some applications to functionalize the polymer to render
it reactive or cross-linkable in character, to enhance various properties or characteristics of
the overall conjugated material. Accordingly, the polymer may contain any functionality,
repeating groups, linkages, or other constituent structures which do not preclude the efficacy
of the conjugated neublastin mutein composition for its intended purpose.
Illustrative polymers that may usefully be employed to achieve these desirable
characteristics are described herein below in exemplary reaction schemes. In covalently
bonded peptide applications, the polymer may be functionalized and then coupled to free
amino acid(s) of the peptide(s) to form labile bonds.
In some embodiments, the neublastin polypeptide is linked to the polymer via a
terminal reactive group on the polypeptide. Alternatively, or in addition, the neublastin
polypeptide may be linked via the side chain amino group of an internal lysine residue, e.g., a
lysine residue introduced into the amino acid sequence of a naturally occurring neublastin
polypeptide. Thus, conjugations can also be branched from the non terminal reactive groups.
The polymer with the reactive group(s) is designated herein as "activated polymer". The
reactive group selectively reacts with free amino or other reactive groups on the protein.
Attachment may occur in the activated polymer at any available neublastin amino
group such as the alpha amino groups or the epsilon amino groups of a lysine residue or
residues introduced into the amino acid sequence of a neublastin polypeptide or variant
thereof. Free carboxylic groups, suitably activated carbonyl groups, hydroxyl, guanidyl,
imidazole, oxidized carbohydrate moieties and mercapto groups of the neublastin (if
available) can also be used as attachment sites.
Generally from about 1.0 to about 10 moles of activated polymer per mole of protein,
depending on protein concentration, is employed. The final amount is a balance between
maximizing the extent of the reaction while minimizing non-specific modifications of the
product and, at the same time, defining chemistries that will maintain optimum activity, while
at the same time optimizing, if possible, the half-life of the protein. Preferably, at least about
50% of the biological activity of the protein is retained, and most preferably near 100% is
retained.
The reactions may take place by any suitable method used for reacting biologically
active materials with inert polymers, preferably at about pH 5-8, e.g., pH 5, 6, 7, or 8, if the
reactive groups are on the alpha amino group at the N-terminus. Generally the process
involves preparing an activated polymer and thereafter reacting the protein with the activated
polymer to produce the soluble protein suitable for formulation. The above modification
reaction can be performed by several methods, which may involve one or more steps.
The polymer can be coupled to the variant neublastin polypeptide using methods
known in the art. For example, in one embodiment, the polyalkylene glycol moiety is
coupled to a lysine group of the neublastin polypeptide or variant neublastin polypeptide.
Linkage to the lysine group can be performed with a N-hydroxylsuccinimide (NHS) active
ester such as PEG succinimidyl succinate (SS-PEG) and succinimidyl propionate (SPAPEG).
Suitable polyalkylene glycol moieties include, e.g^carboxymethyl-NHS, norleucine-
NHS, SC-PEG, tresylate, aldehyde, epoxide, carbonylimidazole, and PNP carbonate.
Additional amine reactive PEG linkers can be substituted for the succinimidyl moiety.
These include, e.g. isothiocyanates, nitrophenylcarbonates, epoxides, and benzotriazole
carbonates. Conditions are preferably chosen to maximize the selectivity and extent or
reaction. Linear and branched forms of PEG can be used as well as other alkyl forms. The
length of the PEG can be varied. Most common forms vary in size from 2K-100 K. While
the present examples report that targeted pegylation at the N-terminus does not affect
pharmokinetic properties, the fact that the material retained physiological function indicates
that modification at the site or sites disclosed herein is not deleterious. Consequently, in
generating mutant forms of NBN that could provide additional sites of attachment through
insertion of lysine residues, the likely outcome that these forms would be pegylated both at
the lysine and at the N-terminus is considered acceptable.
If desired, neublastin variant polypeptides may contain a tag, e.g., a tag that can
subsequently be released by proteolysis. Thus, the lysine moiety can be selectively modified
by first reacting a Ms-tag variant with a low molecular weight linker such as Traut's reagent
(Pierce) which will react with both the lysine and N-terminus, and then releasing the his tag.
The polypeptide will then contain a free SH group that can be selectively modified with a
PEG containing a thiol reactive head group such as a maleimide group, a vinylsulfone group,
a haloacetate group, or a free or protected SH.
Traut's reagent can be replaced with any linker that will set up a specific site for PEG
attachment. By way of example, Traut's reagent could be-replaced with SPDP, SMPT,
SATA, or SATP (all available from Pierce). Similarly one could react the protein with a
amine reactive linker that inserts a maleimide (for example SMCC, AMAS, BMPS, MBS,
EMCS, SMPB, SMPH, KMUS, or GMBS), a haloacetate group (SBAP, SIA, SIAB), or a
vinylsulfone group and react the resulting product with a PEG that contains a free SH. The
only limitation to the size of the linker that is employed is that it cannot block the subsequent
removal of the N-terminal tag.
Thus, in other embodiments, the polyalkylene glycol moiety is coupled to a cysteine
group of the neublastin polypeptide or variant neublastin polypeptide. Coupling can be
effected using, e.g., a maleimide group, a vinylsulfone group, a haloacetate group, and a thiol
group.
One or more sites on a variant neublastin polypeptide can be coupled to a polymer.
For example, one two, three, four, or five PEG moieties can be attached to the polymer. In
some embodiments, a PEG moiety is attached at the amino terminus and/or amino acids 14,
39, 68, and 95 of a neublastin polypeptide numbered as shown in Table 1.
In preferred embodiments, the variant neublastin polypeptide in the composition has a
longer serum half-life relative to the half-life of the variant polypeptide in the absence of the
polymer. Alternatively, or in addition, the variant neublastin polypeptide in the composition
binds GFRa3, activates RET, normalizes pathological changes of a neuron, or enhances
survival of a neuron, or performs a combination of these physiological functions.
In preferred embodiments, the composition is provided as a stable, aqueously soluble
conjugated neublastin polypeptide or variant neublastin polypeptide complex comprising a
neublastin polypeptide or variant neublastin polypeptide coupled to a polyethylene glycol
moiety. If desired, the neublastin polypeptide or variant neublastin polypeptide may be
coupled to the polyethylene glycol moiety by a labile bond. The labile bond can be cleaved
in, e.g., biochemical hydrolysis, proteolysis, or sulfhydryl cleavage. For example, the bond
can be cleaved under in vivo (physiological) conditions.
Pharmaceutical compositions containing variant neublastin-polymer conjugates
Also provided is a pharmaceutical composition including a variant neublastinpolymer
conjugate of the present invention. A "pharmaceutical composition" as used
herein is defined as comprising a neublastin protein or conjugate of the invention, dispersed
in a physiologically acceptable vehicle, optionally containing one or more other
physiologically compatible ingredients. The pharmaceutical composition thus may contain
an excipient such as water, one or more minerals, sugars, detergents, and one or more carriers
such as an inert protein (e.g., heparin or albumin). .
The polymer-neublastin conjugates of the invention may be administered per se as
well as in the form of pharrnaceutically acceptable esters, salts, and other physiologically
functional derivatives thereof. In such pharmaceutical and medicament formulations, the
vaiiant neublastin conjugate preferably is utilized together with one or more pharmaceutically
acceptable carrier(s) and optionally any other therapeutic ingredients.
The carrier(s) must be pharmaceutically acceptable in the sense of being
compatible with the other ingredients of the formulation and not unduly deleterious to the
recipient thereof. The variant neublastin is provided in an amount effective to achieve a
desired pharmacological effect or medically beneficial effect, as described herein, and in a
quantity appropriate to achieve the desired bioavailable in vivo dose or concentration.
The formulations include those suitable for parenteral as well as non parenteral
administration, and specific administration modalities include oral, rectal, buccal, topical,
nasal, ophthalmic, subcutaneous, intramuscular, intravenous, transdermal, intrathecal, intraarticular,
intra-arterial, sub-arachnoid, bronchial, lymphatic, vaginal, and intra-uterine
administration. Formulations suitable for aerosol and parenteral administration, both locally
and systemically, are preferred.
When the variant neublastin is utilized in a formulation comprising a liquid solution,
the formulation advantageously may be administered orally, bronchially, or parenterally.
When the neublastin is employed in a liquid suspension formulation or as a powder in a
biocompatible carrier formulation, the formulation may be advantageously administered
orally, rectally, or bronchially. Alternatively, it may be administered nasally or bronchially,
via nebulization of the powder in a carrier gas, to form a gaseous dispersion of the powder
which is inspired by the patient from a breathing circuit comprising a suitable nebulizer
device.
The formulations comprising the proteins of the present invention may conveniently
be presented in unit dosage forms and may be prepared by any of the methods well known in
the art of pharmacy. Such methods generally include the step of bringing the active
ingredient(s) into association with a carrier which constitutes one or jnore accessory
ingredients.
Typically, the formulations are prepared by uniformly and intimately bringing the
active ingredient(s) into association with a liquid carrier/a finely divided solid carrier, or
both, and then, if necessary, shaping the product into dosage forms of the desired
formulation.
Formulations of the present invention suitable for oral administration may be
presented as discrete units such as capsules, cachets, tablets, or lozenges, each containing a
predetermined amount of the active ingredient as a powder or granules; or a suspension in an
aqueous liquor or a non-aqueous liquid, such as a syrup, an elixir, an emulsion, or a draught.
Formulations suitable for parenteral administration conveniently comprise a sterile
aqueous preparation of the active conjugate, which preferably is isotonic with the blood of
the recipient (e.g., physiological saline solution). Such formulations may include suspending
agents and thickening agents or other micropaiticulate systems which are designed to target
the compound to blood components or one or more organs. The formulations may be
presented in unit-dose or multi-dose form.
Nasal spray formulations comprise purified aqueous solutions of the active conjugate
with preservative agents and isotonic agents. Such formulations are preferably adjusted to a
pH and isotonic state compatible with the nasal mucus membranes.
Formulations for rectal administration may be presented as a suppository with a
suitable carrier such as cocoa butter, hydrogenated fats, or hydrogenated fatty carboxylic
acid. Ophthalmic formulations such as eye drops are prepared by a similar method to the
nasal spray, except that the pH and isotonic factors are preferably adjusted to match that of
the eye.
Topical formulations comprise the conjugates of the invention dissolved or suspended
in one or more media, such as mineral oil, petroleum, polyhydroxy alcohols, or other bases
used for topical pharmaceutical formulations.
In addition to the aforementioned ingredients, the formulations of this invention may
further include one or more accessory ingredient(s) selected from diluents, buffers, flavoring
agents, disintegrants, surface active agents, thickeners, lubricants, preservatives (including
antioxidants), and the like. The foregoing considerations apply also to the neublastin fusion
proteins of the invention (e.g., neublastin-HSA fusions).
Accordingly, the present invention contemplates the provision of suitable fusion
proteins for in vitro stabilization of a variant neublastin conjugate in solution, as a preferred
illustrative application of the invention. The fusion proteins may be employed for example to
increase the resistance to enzymatic degradation of the variant neublastin polypeptide and
provides a means of improving shelf life, room temperature stability, and the like. It is
understood that the foregoing considerations apply also to the neublastin-serum albumin
fusion proteins (including the human neublastin-human serum albumin fusion proteins) of the
invention.
Methods of treatment
The variant neublastin polypeptides, as well as fusion proteins, or conjugates thereof,
may be used for treating or alleviating a disorder or disease of a living animal body,
preferably of a mammal, more preferably a primate including a human, which disorder or
disease is responsive to the activity of neurotrophic agents.
The compositions of the invention may be used directly via, e.g., injected, implanted
or ingested pharmaceutical compositions to treat a pathological process responsive to the
neublastin polypeptides. The compositions may be used for alleviating a disorder or disease
of a living animal body, including a human, which disorder or disease is responsive to the
activity of neurotrophic agents. The disorder or disease may in particular be damage of the
nervous system caused by trauma, surgery, ischemia, infection, metabolic diseases,
nutritional deficiency, malignancy or toxic agents, and genetic or idiopathic processes.
The damage may in particular have occurred to sensory neurons or retinal ganglion
cells, including neurons in the dorsal root ganglia of the spinal cord or in any of the following
tissues: the geniculate, petrosal and nodose ganglia; the vestibuloacoustic complex of the
eighth cranial nerve; the ventrolateral pole of the maxillomandribular lobe of the trigeminal
ganglion; and the mesencephalic trigeminal nucleus.
In a preferred embodiment of the method of the invention, the disease or disorder is a
neurodegenerative disease involving lesioned and traumatic neurons, such as traumatic
lesions of peripheral nerves, the medulla, and/or the spinal cord, cerebral ischemic neuronal
damage, neuropathy and especially peripheral neuropathy, peripheral nerve trauma or injury,
ischemic stroke, acute brain injury, acute spinal cord injury, nervous system tumors, multiple
sclerosis, exposure to neurotoxins, metabolic diseases such as diabetes or renal dysfunctions
and damage caused by infectious agents, neurodegenerative disorders including Alzheimer's
disease, Huntington's disease, Parkinson's disease, Parkinson-Plus syndromes, progressive
Supranuclear Palsy (Steele-Puchardson-Olszewski Syndrome), Olivopontocerebellar Atrophy
(OPCA), Shy-Drager Syndrome (multiple systems atrophy), Guamanian parkinsonism
dementia complex, amyotrophic lateral sclerosis, or any other congenital or
neurodegenerative disease, and memory impairment connected to dementia.
In a preferred embodiment, sensory and/or autonomic system neurons can be treated.
In particular, nociceptive and mechanoreceptive neurons can be treated, more particularly
delta fiber and C-fiber neurons. In addition, sympathetic and parasympathetic neurons of the
autonomic system can be treated.
In another'preferred embodiment, motor neuron diseases such as amyotrophic lateral
sclerosis ("ALS") and spinal muscular atrophy can be treated. In yet another preferred
embodiment, the neublastin molecules of this invention to can be used to enhance nerve
recovery following traumatic injury. Alternatively, or in addition, a nerve guidance channel
with a matrix containing variant neublastin polypeptides, or fusion or conjugates of variant
neublastin polypeptides can be used in the herein described methods. Such nerve guidance
channels are disclosed, e.g., United States Patent No. 5,834,029, incorporated herein by
reference.
In a preferred embodiment, the compositions disclosed herein (and pharmaceutical
compositions containing same) are used in the treatment of peripheral neuropathies. Among
the peripheral neuropathies contemplated for treatment with the molecules of this invention
are trauma-induced neuropathies, e.g., those caused by physical injury or disease state,
physical damage to the brain, physical damage to the spinal cord, stroke associated with brain
damage, and neurological disorders related to neurodegeneration. Also included herein are
those neuropathies secondary to infection, toxin exposure, and drug exposure. Still further
included herein are those neuropathies secondary to systemic or metabolic disease. The
herein disclosed compositions can also be used to treat chemotherapy-induced neuropathies
(such as those caused by delivery of chemotherapeutic agents, e.g., taxol or cisplatin); toxin
induced neuropathies, drug-induced neuropathies, vitamin-deficiency induced neuropathies;
idiopathic neuropathies; and diabetic neuropathies. See, e. g., United States patents 5,496,804
and 5,916,555, each herein incorporated by reference,
Additional conditions that can be treated using the herein described compositions are
mono-neuropathies, mono-multiplex neuropathies, and poly-neuropathies, including axonal
and demyelinating neuropathies, using the herein described compositions.
In another preferred embodiment, the compositions of the invention (and
pharmaceutical compositions containing same) are used in the treatment of various disorders
in the eye, including photoreceptor loss in the retina in patients afflicted with macular
degeneration, retinitis pigmentosa, glaucoma, and similar diseases.
The invention will be further illustrated in the following non-limiting examples.
Example 1—Unavailability of N-terminal pegylated neublastin
CHO cell derived recombinant human neublastin was observed to be rapidly cleared
from circulation if administered intl'avenously in rats. None of the protein was detected in the
serum following subcutaneous administration. To increase bioavailability of neublastin,
pegylated forms were constructed.
Because no lysines occur in the NBN sequence, amine-specific pegylation chemistries
will result in pegylation of an NBN polypeptide at its amino terminus. Thus, for each
neublastin dimer, two PEG moieties should be attached. Accordingly, PEG forms were first
directly targeted to the N-terminus through amine specific chemistries. Surprisingly,
pegylation even with two, 20 K PEGs attached had little benefit on half life, indicating that a
mechanism based clearance pathway was overriding the enhancement in half life that was
expected to be achieved by pegylation.
Example 2-Construction of a pegylated neublastin N95K mutein
The bioavailability of NBN mutant forms pegylated at internal amino acid residues
was next examined. A series of four mutants replacing naturally occurring residues at
positions 14, 39, 68, and 95 were designed to insert lysines at selected sites in the sequence.
These lysines would provide alternative sites for PEG attachment. These sites were selected
using the crystal structure of GDNF (Nat.Struct.Biol. 4: 435-8, 1997) as a framework to
identify surface residues and the persephin/ neublastin chimera mutagenesis study
(J.Biol.Chem. 275: 3412-20, 2000) to identify functionally important regions of the structure
that should be avoided.
Two of the mutations (R39 and R68) were targeted at a region that based on the
distribution of positive charges on the surface might represent a heparin binding site, a
property of the protein which likely contributes to its rapid clearance. A third site was
targeted at N95, the natural glycosylation site in wild-type NBN. This site is naturally
modified with a complex carbohydrate structure. Therefore, modification with PEG at this
site was not expected to impact function. The fourth site (R14) was selected in a region that
was not covered by any other of the modifications. A mutant in which the asparagine residue
at position 95 was replaced with a lysine (the "N95K mutant") was chosen for the studies
disclosed herein.
Four different rat neublastin muteins containing one or more alterations in the wildtype
sequence of rat neublastin polypeptide were constructed. The muteins include the single
N95K mutein, and the muteins containing single substitutions at other sites in the amino acid
sequence of rat neublastin: R14K; R68K; and R39K. In the "XiNiX2" nomenclature, X:
refers to an amino acid of a wild-type neublastin polypeptide, NI refers to the numerical
position of the Xi amino acids in the sequence, as numbered according to SEQ ID NO: 1. Xa
refers to an amino acid substituted for the wild-type amino acid at the indicated numerical
position in the sequence.
To construct the rat N95K neublastin mutation, site-directed mutagenesis was performed on
pCMB020, a plasmid encoding wild-type rat neublastin. The wild-type rat neublastin nucleic
and the amino acid sequence of the polypeptide encoded thereby are presented below:
(Table Removed)Mutagenesis of pCM020 using oligonucleotides KD2-310 and KD3-211 resulted in
formation of the plasmid pCMB027:
In pCMB027, the codtm encoding asparagine at position 95 has been replaced with a
codon encoding lysine.
A R14K neublastin mutein formed by replacement of a codon encoding arginine at
position 14 with a codon encoding lysine in the neublastin coding sequence of pCMB020.
Site-directed mutagenesis was performed on pCMB020 using oligonucleotides KD3-254 and
The resulting construct was named pCMB029.
A R68K neublastin mutein formed by replacement of a codon encoding arginine at
position 68 with a codon encoding lysine in the neublastin coding sequence of pCMB020.
Site-directed mutagenesis was performed on pCMB020 using oligonucleotides KD3-25S and
The resulting construct was named pCMBOSO.
A R39K neublastin mutein formed by replacement of arginine at amino acid 39 with
lysine in the neublastin coding sequence of pCMB020. Site-directed mutagenesis of
pCMB027 was performed using oligonucleotides KD3-256 and KD3-257:
For expression and purification, a plasmid encoding the rat NBN N95K mutein was
expressed ini as a His-tagged fusion protein with an enterokinase cleavage site
immediately adjacent to the start of the mature 113 amino acid NBN sequence. The E.coli
was grown in a 500 L fermentor and frozen cell paste was provided. The E.coli cells were
lysed in a Manton Gaulin Press and the rat NBN NK recovered from the insoluble washed
pellet fraction.
The NBN was extracted from the pellet with guanidine hydrochloride, refolded, and
the his-tag removed with enterokinase. The product was then subjected to chromatography on
Ni NTA agarose (Qiagen) and on Bakerbond WP CBX cation exchange resin.
Enterokinase treatment of the his tagged product resulted in an aberrant cleavage of
the protein at arginine 7 in the mature sequence. The resulting des 1-7 NBN product was fully
active in the KIRA ELISA and structurally indistinguishable from the mature form in its
susceptibility to guanidine-induced denaturation and therefore was used for subsequent work.
Rat NBN N95K was pegylated at an average of 3.3 PEG moieties/molecule using
methoxylpoly(ethylene glycol)-succinimidyl propionate (SPA-PEG) with a molecular mass
of 10,000 Da as the reactant. The resulting pegylated product was subjected to extensive
characterization including analysis by SDS-PAGE, size exclusion chromatography (SEC),
reverse phase HPLC, matrix assisted laser desorption/ionization mass spectromeiry
(MALD/IMS), pep tide mapping, assessment of activity in the BORA ELISA, and
determination of endotoxin content. The purity of the NBN N95K product prior to pegylation
as measured by SDS-PAGE and SEC was greater than 95%. The NBN N95K product
migrated under nonreducing conditions as a dirner, consistent with its predicted structure.
After pegylation, the resulting product consisted of a series of modified adducts containing 2
PEGs/ molecule 5% of the product, 3 PEGs/molecule 60% of the product, 4 PEGs/molecule
30% of the product, and several minor forms of higher mass. In the pegylated sample there
was no.evidence of aggregates. Residual levels of unmodified NBN in the product were
below the limits of quantitation. The endotoxin content of the material is routinely less than 1
EU/mg. The specific activity of the pegylated NBN in the KIRA ELISA is 10 nM. The
pegylated product was formulated at 1.1 mg/mL in PBS pH 6.5. The material, which is
similar in potency to wt-NBN, can be supplied as a frozen liquid, which is stored at -70°C.
The R14K, R39K, and R68K muteins were expressed in E. coli and can be subjected
to the same methods for purification, pegylation and assessment of function as described
above for the N95K-NBN.
Preparation of pegylated NBN
230 mL of the refolded rat NBN N95K (2.6 mg/mL) that had been produced in E.coli
and stored at 4°C in 5 niM sodium phosphate pH 6.5, 100 mM NaCl was diluted with 77 mL
of water, 14.4 mL of 1M HEPES pH7.5, and 2.8 g (10 mg/mL final) of PEG SPA 10,000 Da
(Shearwater Polymers, Inc.). The sample was incubated at room temperature for 4 hours in
the dark, then treated with 5 mM imidazole (final), filtered, and stored overnight at 4°C. The
product was generated in two batches one containing 130 mL of the NBN N95K bulk and the
other containing 100 mL of the bulk. The pegylated NBN was purified from the reaction
mixture on Fractogel EMD S03' (M) (EM Industries). The column was run at room
temperature. All buffers were prepared pyrogen free. Sodium chloride was added to the
reaction mixture to a final concentration of 87 mM and the sample was loaded onto a 45 mL
Fractogel column (5 cm internal diameter).
The column was washed with one column volume of 5 mM sodium phosphate pH 6.5,
80 mM NaCl, then with three one column volume aliquots of 5 mM sodium phosphate
containing 50 mM NaCl. The resin was transferred into a 2.5 cm diameter column and the
pegylated NBN was eluted from the column with six ten mL steps containing 5 mM sodium
phosphate pH 6.5, 400 mM NaCl, three steps containing 500 mL NaCl, and six steps
containing 600 mM NaCl. Elution fractions were analyzed for protein content by absorbance
at 280 nm and then for extent of modification by SDS-PAGE. Selected fractions were pooled,
filtered through a 0. 2 pun filter, and diluted with water to 1.1 mg pegylated ratNBN/mL.
After assessing endotoxin levels in the individual batches, they were pooled and refiltered
through a 0.2 |xm membrane. The final material was aliquoted and stored at - 70°C.
UV spectrum of purified pegylated NBN NK
The UV spectrum (240-340 nm) of pegylated NBN NK was taken on the neat
sample. The sample was analyzed in triplicate. The pegylated sample exhibited an absorbance
maximum at 275-277 nm and an absorbance minimum at 247-249. This result is consistent
with what is observed on the unmodified NBN bulk intermediate. The protein concentration
of the pegylated product was estimated from the spectrum using an extinction coefficient of
28o°'I%=0-50. The protein concentration of the pegylated NBN bulk is 1.1 mg/rnL, No
turbidity was present in the sample as evident by the lack of absorbance at 320 nm.
Characterization of pegvlated NBN NK by SDS-PAGE
Aliquots of pegylated NBN containing 3, 1.5, 0.75, and 0.3 (o.g of the product were
subjected to SDS-PAGE on a 4-20% gradient gel (Owl). The gel was stained with Coomassie
brilliant blue R-250. Molecular weight markers (GIBCO-BRL) were ran in parallel.
SDS-PAGE analysis of pegylated NBN NK under non reducing conditions revealed a
series of bands corresponding to modifications with 2, 3, 4, and more than 4 PEGs/ molecule.
The major band with apparent mass of 98 kDa contains 3 PEGS/ molecules. In the purified,
pegylated product unmodified NBN was not detected. The presence of a mixture of products
with 2, 3 and 4 PEGS attached was verified by MALDI mass spectrometric analysis. The
ratio of product containing 2, 3, and 4 PEGs was determined by densitometry and determined
to be 7, 62, and 30 percent of the total, respectively.
Characterization of pegvlated NBN by size exclusion chromatography
Pegylated NBN was subjected to size exclusion chromatography on an analytical
Superose 6 HR1O/30 FPLC column using 5 mM MES pH 6.5, 300 mM NaCl as the mobile
phase. The column was run at 20 mL/h. Elution fractions were monitored for absorbance at
280 nm. The pegylated NBN eluted as a single peak with an apparent molecular weight of
about 200 kDa consistent with the large hydrodynamic volume of the PEG. No evidence of
aggregates were observed. Free NBN, which elutes with an apparent molecular mass of about
30kDa, was not detected in the preparation.
Analysis of pegylated NBN by reverse phase HPLC
Pegylated NBN NK was subjected to reverse phase HPLC on a Vydac C4 (5 jxm, 1 x
250 mm) column. The column was developed using a 60 mm gradient from 40 to 60% B
(Buffer A: 0. 1% TFA, Buffer B: 75% acetonitrile/0.085% TFA). The column effluent was
monitored for absorbance at 214 nm and fractions collected for subsequent analysis. - .
Pegylated NBN NK was fractionated into its various di (60.5 mm), tri (63.3 mm), and tetra
(67.8 mm) pegylated components by reverse phase HPLC on a C4 column. The relative
intensities of the peaks suggest that the ratios of the components are 5.4, 60.5, and 30.1 %,
respectively. Peak identities were verified by MALDI-MS. There was no evidence of non
pegylated NBN NK (elutes at 5- 15 mm) in the product.
Analysis of pegylated NBN by mass spectrometry
Pegylated NBN NK was desalted on a C4 Zip Tip and analyzed by mass spectrometry
on a Voyager-DE™ STR (PerSeptive Biosystems) matrix-assisted laser desorption/
ionization time-of- flight (MALDI-TOF) mass spectrometer using sinapinic acid as a matrix.
0.5 uL of the purified protein was mixed with 0.5 uL of matrix on the target plate. Mass
spectrometry of pegylated NBN revealed singly and doubly charged forms of three adducts.
The observed masses of 43803 Da, 54046 Da, and 64438 Da are consistent with
modifications of 2, 3, and 4 PEGs/ molecule.
Analysis of pegylated NBN by peptide mapping.
The specificity of the pegylation reaction was evaluated by peptide mapping.
Pegylated NBN was separated into di, tri, and tetra pegylated components, which were then
reduced, alkylated, and further separated into their single chain components by HPLC on a C4
column. These components and reduced and alkylated unmodified NBN NK as a control
were digested with Asp-N proteinase and the resulting cleavage products were fractionated
by reversed phase HPLC on a Vydac Cis (5 )j,m, 1 x 250 mm) column using a 60 mm
gradient from 0 to 60% B (Buffer A: 0.1 % TFA, Buffer B: 75% acetonitrile/0.085% TFA).
The column effluent was monitored for absorbance at 214 mm.
The rat NBN sequence contains four internal aspartic acids and therefore was
expected to yield a simple cleavage profile when digested with endoproteinase Asp-N. All of
the peaks from the Asp-N digest of rat NBN NK have been identified by mass spectrometry
and/or Edman N-terminal sequencing and thus the peptide map can be used as a simple tool
to probe for the sites of modification by the presence or absence of a peak. The identity of the
various peaks are summarized below in Table 3
(Table Removed)Since NBN exists as a homodimer, the rat NBN NK product contains four potential
sites for pegylation, the two N-terminal amines from each of the chains and the two N95K
sites that were engineered into the construct. In the peptide map of the dipegylated chain,
only the peak that contains the peptide with the NK mutation was altered by the PEG
modification. None of the other peaks were affected by the PEG modification. The mapping
data therefore indicate that the PEG moiety is specifically attached to this peptide and not to
any of the other peptides that were screened. The second potential site of attachment, the Nterminus
is on a peptide that is only three amino acids long and is not detected in the peptide
map. It is inferred that additional PEG attachments are at this site. Consistent with this notion,
a small percentage of the rat NBN NK is not truncated and contains the mature Ala-I
sequence. This peptide elutes at 30 ^m and is visible in the peptide map from the nonpegylated
digest, but is absent from the pegylated NBN NK digests.
Example 3. Assessing the potency of internally pegylated neublastin in. a kinase
receptor activation (K3RA) ELISA
The potency of pegylated rat NBN was measured using NBN dependent activation/
phosphorylation of c-Ret as a reporter for NBN activity in an ELISA that was specific for the
presence of phosphorylated RET. NB41A3-mRL3 cells, an adherent murine neuroblastoma
cell line which expresses Ret and GFRaS, were plated at 2 x 105 cells per well in 24-well
plates in Dulbecco's modified eagle medium (DMEM), supplemented with 10 % fetal bovine
serum, and cultured for 18 h at 37 °C and 5 % CO2.
The cells were washed with PBS, and treated with serial dilutions of NBN in 0.25 roL
of DMEM for 10 min at 37 °C and 5 % CO2. Each sample was analyzed in duplicate. The
cells were washed with 1 mL of PBS, and lysed for Ih at 4 °C with 0.30 mL of 10 mM Tris
HC1, pH 8.0, 0.5 % Nonidet P40, 0.2 % sodium deoxycholate, 50 mM NaF, 0.1 mM Na3
VO4,1 mM phenylmethylsulfonyl fluoride with gently rocking the plates. The lysates were
further agitated by repeated pipetting and 0.25 ml. of sample was transferred to a 96- well
ELISA plate that had been coated with 5 |0.g/mL of anti-Ret mAb (AA.GE7.3) in 50 mM
carbonate buffer, pH 9.6 at 4°C for 18 h, and blocked at room temperature for one hour with
block buffer (20 mM Tris HC1 pH 7.5, 150 mM NaCl, 0.1% Tween-20 (TEST) containing 1
% normal mouse serum and 3 % bovine serum albumin).
After a 2 h incubation at room temperature, the wells were washed 6-times with
TEST. Phosphorylated Ret was detected by incubating the wells at room temperature for 2 h ,
with 2 :g/mL of horseradish peroxidase (HRP)-conjugated anti-phosphotyrosine 4G10
antibody in block buffer, washing 6-times with TEST, and measuring HRP activity at 450 nm
with a colorometric detection reagent. The absorbance values from wells treated with lysate
or with lysis buffer were measured and the background corrected signal was plotted as a
function of the concentration of NBN present in the activation mixture. The potency of
pegylated NBN in the KIRA ELISA was 10 nM, which is indistinguishable from that of the
NBN NK starting material. There was no effect of two freeze-thaw cycles on potency and
following this treatment there was no significant increase in the turbidity of the sample,
indicating that the samples can be safely thawed for the study. In independent studies
accessing the activity of product with three and four 10 kDa PEGs/molecule separately, it
was determined that the adduct with three PEGs was fully active, while the four PEG product
had reduced activity.
Example 4. Pharmokinetic studies of internally pegylated rat neublastin in rats and
mice
The pharmokinetic properties of various pegylated and non pegylated NBN products
in rat and mouse models were examined.
The data revealed that pegylation of rat NBN NK with 3.3,10000 Da PEGs resulted
in a significant effect on the half life and bioavailability of the neublastin. Following a 1
mg/kg IV administration in Sprague Dawley rats, peak levels of pegylated NBN of 3000
ng/mL were detected after 7 minutes, and levels of 700 ng/mL were detected after 24 h, 200
ng/mL after 48 h, and 100 ng/mL after 72 h. In contrast for non pegylated NBN following a 1
mg/kg IV administration, levels of 1500 ng/mL were detected after 7 minutes, but then the
levels quickly dropped to 70 ng/mL after 3 h and were not detectable after 7 h. The effects of
pegylation were even more pronounced in animals treated with pegylated NBN by
subcutaneous administration.
Following a 1 mg/kg s.c. administration, circulating levels of pegylated NBN reached a
maximum of 200 ng/mL after 24 h and remained at this level for the duration of the three day
study. In contrast, no detectable NBN was observed at any time point following
administration of unmodified NBN.
The analysis of the pegylated NBN samples are complicated by the presence of
adducts containing 2, 3 and 4 PEGs per molecule, which each will display a different PK
profile. In early PK studies, mice were used to facilitate screening through a variety of
candidates and routes of administration. The mouse studies revealed dramatic differences in
the bioavailability of the candidates. However, when the 3.3 10 K PEG adduct was evaluated
in rats, it was found to be less bioavailable in rats than it was in mice. This difference in
bioavailability was particularly pronounced following i.p. administration. Levels in mice
reached 1600 ng/mL after 7 hr and remained at 400 ng/mL after 24 hr. In contrast, rat levels
were constant at 100 ng/mL for 4-48 hr.
Both wild-type rat neublastin (wt-NBN) and neublastin with an Asn-to-Lys
substitution at position 95 (NK-NBN) were refolded and purified to >95% for efficacy tests
in the STZ diabetic rat neuropathy model. Wt-NBN was formulated to go directly into animal
testing while NK-NBN was prepared for pegylation with 10 kDa PEG-SPA. To accomplish
the refolding and purification goal, a refolding method utilizing size exclusion
chromatography (SEC) was developed that permitted the renaturation of NBN from E.coli
inclusion bodies in large quantities and at high concentrations. In addition to SEC, both Ni-
NTA and CM silica column chromatography steps were employed to increase the final
protein purity. The proteins were subjected to extensive characterization including analysis
by SDS-PAGE, size exclusion chromatography, ESMS, assessment of activity by KIRA
ELIS A, and determination of endotoxin content. SDS-PAGE and SEC of the final protein
products indicated a purity of greater than 95%. The endotoxin level of each product was 0.2 EU/mg. The specific activity of both proteins in the KIRA ELISA is approximately 10
nM. Wt-NBN was formulated at 1.0 rag/ml and NK-NBN was formulated at 2.6 mg/ml in
phosphate-buffered saline (PBS) pH6.5. wt-NBN was aliquoted into 15 ml tubes and stored
frozen at -70°C while NK-NBN was subjected to pegylation prior to aliquoting and freezing.
Example 5. Refolding of a wild-type neubiastin and the N95K neublastin mutein
Both NBN forms were expressed in E. coli as a His-tagged fusion proteins with an
enterokinase cleavage site immediately adjacent to the start of the mature 113 amino acid
sequence. Bacteria expressing either Wt- (1.8 kg pellet) or NK-NBN (2.5 kg pellet) were
subjected to lysis in 2 liters of PBS using a Gaulin press. Following centrifugation (10,000
rpm) to pellet the inclusion bodies, the supernatants from each preparation were discarded.
The inclusion body pellets were washed two times with buffer (0.02M Tris-HCIpH 8.5, 0.5
mM EDTA) then washed two times with the same buffer containing Triton X-l 00 (2%, v/v)
followed by two additional buffer washes without detergent. Both pellets were solubilized
using 6M guanidine hydrochloride, 0.1M Tris pH 8.5, 0.1M DTT, and 1 mM EDTA. To aid
in the solubilization process, each pellet was subjected to homogenization using a polytron
homogenizer followed by overnight stirring at room temperature. The solubilized:proteins
were clarified by centrifugation prior to denaturing chromatography through Superdex 200
(5.5 liter column equilibrated with 0.05M glycine/H3P04 pH 3.0 with 2M Guanidine-HCI) at
20 ml per minute.
Denatured NBN was identified by SDS-PAGE. Fractions containing either Wt-NBN
or NK-NBN were pooled and concentrated to approximately 250 mL using an Amicon 2.5-
liter stirred cell concentrator. After filtration to remove any precipitate, the concentrated
protein was subjected to renaturing sizing chromatography through Superdex 200
equilibrated with 0.1 M Tris-HCl pH 7.8, 0.5M guanidine-HCl, 8.8 mM reduced glutathione
and 0.22 mM oxidized glutathione. The column was developed using 0.5M guanidine-HCl at
20 mL per minute. Fractions containing renatured wt-NBN or NK-NBN were identified by
SDS-PAGE, pooled, and stored at 4°C until needed for His tag removal.
Concentration of NBN by Ni-NTA chromatographv (TR5919-138).
Renatured NBN was stored at 4°C for at least 24 hours before proceeding with the
purification to promote disulfide formation between the NBN monomers. During this time, a
precipitate formed and was removed by filtration through a 0.2 jo, PES filter unit. To decrease
non-specific binding, the protein solution was brought to 20 mM imidazole prior to loading
on a 100 ml Ni-NTA (Qiagen) column equilibrated with column buffer (0.5M guanidine and
20 mM irnidazole) at 50 ml per minute. Following the protein application, the column was
washed to baseline using the same buffer. NBN was eluted from the resin using
approximately 300 mL of elution buffer containing 0.5M guanidine-HCl and 0.4M imidazole.
After elution, NBN was dialyzed overnight (using 10 kDa dialysis tubing) at room
temperature against ten volumes of 5 mM HCI. Dialysis promotes the hydrolysis of
contaminating substances and decreases the guanidine-HCl and imidazole concentrations to
0.05M and 0.04M, respectively.
Cleavage of the His tag by Lysyl Endopeptidase or Enterokinase.
The next day, any precipitate that formed during dialysis was removed by filtration.
The protein sample was made 0.1 M NaCl by the addition of 5M stock for a final salt
concentration including the remaining guanidine-HCl of approximately 150mM. This
concentration was confirmed using a conductivity meter. Additionally, 1 M HEPES pH 8 was
added for a final concentration of 25mM. To cleave the tag, lysyl endopeptidase was added to
wt-NBN and Enterokinase was added to NK-NBN, both at an approximately 1:300 ratio of
protease to NBN. Enterokinase was used in place of lysyl endopeptidase for NK-NBN due to
an additional protease cleavage site in the mutated protein at Lys95. The samples were stirred
at room temperature for 2 hours and the digestions monitored by SDS-PAGE.
His tag removal by Ni-NTA chromatographv.
Protease-treated NBN was applied to a 100 mL Ni-NTA column equiliberated with
0.5M guanidine-HCl and 20 mM imidazole at 50 mL per minute. The column was washed to
baseline with the same buffer. Any protein washing off the column was pooled with the flowthrough
protein containing NBN without the His tag.
CM silica chromatographv.
Following Ni-NTA chromatography, the protein was immediately subjected to further
purification through CM silica resin. A 20 mL CM silica column equiliberated with loading
buffer (5 mM phosphate pH 6.5, 150 mM NaCl) was loaded with NBN at 20 mL per minute.
The column was washed with twenty column volumes of wash buffer (5 mM phosphate pH
6.5, 400 mM NaCl) and the protein step eluted with elution buffer containing 5 mM
phosphate pH 6.5 but with 1 M NaCl. The eluted protein was dialyzed overnight against the
phosphate alone to bring the salt concentration down to 100 mM for NK-NBN and 150 mM
for wt-NBN. Both samples were filtered through a 0.2 u. PES filter unit, analyzed by SDSPAGE,
and stored at 4°C until needed for further characterizations and/or pegylation.
Wt-NBN and NK-NBN were subjected to UV spectrum analysis to assess their
absorbance at 280. Using a micro quartz cuvette and blanking against buffer alone, 100 jjl of
either wt-NBN or NK-NBN was continuously scanned from 230 to 330 nm using a Beckman
spectrophotometer. Based on this analysis, Wt-NBN was determined to be at a concentration
of 1.1 rag/ml and NK-NBN at 2.6 rag/ml (A280 nm-E0'1%=0.5 used for each protein). Less
than 1 % precipitated material was identified based on absorbance at 330 nm.
To assess the purity of both protein preparations, each sample (0.5 mg) was subjected
to size exclusion chromatography through a 16/30 Superdex 75 column. The column was
equiliberated with 5mM phosphate pH 6.5 containing 400 mM NaCl and developed with a
1.5 mL per minuteTlow rate. Based on the absorbance at 280 nm, both wt- and NK-NBN
migrated as a single peak with an expected molecular weight (23-24 kDa), and they did not
contain any significant protein contamination.
Both wt- and NK-NBN were reduced in 2.5 M guanidine-HCl, 60 mM Tris pH 8.0
and 16 mM DTT. The reduced samples were desalted over a short C* column and analyzed
on-line by ESMS using a triple quadrupole instrument. The ESMS raw data were
deconvoluted by the MaxEnt program to generate mass spectra. This procedure allows
multiple charged signals to collapse into one peak that directly corresponds to the molecular
mass in kilodaltons (kDa). The deconvoluted mass spectrum for wt-NBN showed the
predominant species is 12046 kDa, which is in agreement with the predicted molecular
weight of 12046.7 kDa for the 113 amino acid form of the protein. A minor component was
also observed (12063 kDa) suggesting the presence of an oxidation product. Three peaks
were identified in the NK-NBN sample. The major component demonstrated an apparent
molecular mass of 11345 kDa in agreement with the predicted mass for the 106 amino acid
form of the protein. The other two peaks had masses of 11362 and 12061 kDa, suggesting
NK-NBN oxidation and the presence of the 113 amino acid form, respectively.
The presence of the 106 and 113 amino acid forms in the NK-NBN preparation is
attributable to digestion with Enterokinase. This protease from Biozyme is a natural enzyme
preparation purified from calf intestinal mucosa and is reported to contain a slight trypsin
contamination (0.25 ng Trypsin per |jig Enterokinase). Therefore, trypsin may be acting on
NK-NBN on the carboxy terminal side of Arg7 to produce the predominant 106 amino acid
form. On the other hand, Lysyl Endopeptidase used to cleave Wt-NBN is a single protease
activity acting on the carboxy terminal side of the lysine residue contained wjthin the His tag
to produce the mature 113 amino acid NBN form. Both "the 106 and 113 amino acid forms of
NBN are equally active in all assays tested and behave similarly in guanidine-HCl stability
tests.
NBN activity was determined by its ability to stimulate c-Ret phosphorylation in
NB41A3-mRL3 cells using the KIRA ELISA described in Example 3. Phosphorylated Ret
was detected by incubating (2 hours) the captured receptor with HRP-conjugated
phosphotyrosine antibody (4G10; 0.2 ^g per well). Following the incubation, the wells were
washed six times with TEST, and the HRP activity detected at 450 nm with a colorimetric
assay. The absorbance values from wells treated with lysate or with lysis buffer alone were
measured, background corrected, and the data plotted as a function of the concentration of
neublastin present in the activation mixture. The data demonstrate that the purified NBN
resulted in the appearance of phosphorylated RET, indicating that the purified NBN was
active in this assay.
Example 6. Preparation of a serum albumin-neublastin conjugate.
Wildtype rat neublastin at a concentration of 1 mg/ml in PBS was treated with 1 mM
sulfo-SMCC (Pierce) and desalted to remove excess cross-linker. Since the wildtype NBN
protein contains only a single amine at its N-terminus and no free sulfhydryl groups, reaction
with SMCC was expected to result in site specific modification of the NBN with SMCC
attached at its N-terminus.
60 jig of the NBN-SMCC conjugate was incubated with 120 ftg of bovine serum
albumin and analyzed for extent of cross-linking by SDS-PAGE. BSA contains a single free
SH group and consequently reaction with the NBN-SMCC conjugate is expected to result in
modification at this site through the maleimide on the SMCC. Under these conditions, two
additional bands of higher molecular weight were observed, which are consistent in mass
with modification of the NBN with a single BSA moiety and with two BSA molecules since
each NBN molecule contains two N-termini that can undergo reaction, and consequently are
in agreement with this notion. Concurrent with the formation of these bands, was a decrease
in the intensity of die NBN-SMCC and BSA bands. Based on the intensity of the remaining
NBN band the reaction appeared to have gone to 70-80% completion.
The monosubstituted product was purified from the reaction mixture by subjecting the
material to cation exchange chromatography and size exclusion chromatography on a
Superdex 200 column (Pharmacia) essentially as described for pegylation studies discussed
above. Column fractions from the gel filtration run were analyzed by SDS-PAGE and those
containing the monosubstituted product were analyzed for protein content by absorbance at
280 nm. Since the mass of BSA is approximately twice that of neublastin, the apparent
concentration was divided by a factor of 3 to give the NBN equivalent. This fraction was
subjected this to analysis for function in the KLRA ELISA. IC50 values for both the wt- and
BSA-conjugated NBN were 3-6 nM, indicating that conjugation to the BSA had not
compromised function.
While these preliminary studies were generated with BSA, the corresponding serum
albumin proteins from rats and humans also contain a free SH. Consequently a similar
approach can be applied to generate a rat serum albumin-rat NBN conjugate for performing
PK and efficacy studies in rats and human serum albumin-human NBN for performing
clinical trials. Similarly SMCC can be substituted with any of a number of cross-linkers that
contain an amino reactive group on one side and a thiol reactive group on the other side.
Examples of amine reactive cross-linkers that insert a thiol reactive-maleimide are AMAS,
BMPS, MBS, EMCS, SMPB, SMPH, KMUS, or GMBS, that insert a thiol reactivehaloacetate
group are SBAP, SLA, SLAB and that provide a protected or non protected thiol
for reaction with sulfhydryl groups to product a reducible linkage are SPDP, SMPT, SATA,
or SATP all of which are available from Pierce. Such cross linkers are merely exemplary and
many alternative strategies are anticipated for linking the N-terminus of NBN with serum
albumin. A skilled artisan also could generate conjugates to serum albumin that are not
targeted at the N-terminus of NBN or at the thiol moiety on serum albumin. NBN-serum
albumin fusions created using genetic engineering where NBN is fused to the serum albumin
gene at its N-terminus, C-terminus, or at both ends, are also expected to be functional.
This method can be extended through routine adaptations to any NBN-seram albumin
conjugate that would result in a product with a prolonged half-life in animals and
consequently in humans.



WB CLAIM:
l.A conjugate comprising the recombinant neublastin polypeptide conjugated to a non-naturally occurring polymer, wherein the non-naturally occurring polymer is conjugated to the polypeptide at the amino acid substituted at the position 95 in SEQ ID NO.: 1.
2. The conjugate as claimed in claim 1, wherein the polymer is a polyalkylene glycol.
3. The conjugate as claimed in claim 2, wherein the polyalkylene glycol is polyethylene glycol.
4. The conjugate as claimed in claim 3, wherein the polyalkylene glycol is conjugated to a lysine residue substituted at a position corresponding to position 95 in SEQ ID NO:l, SEQ ID NO:2, SEQ ID NO:3 or SEQ ID NO:4.
5. The conjugate as claimed in any one of claims 1 to 4, wherein the
polypeptide is glycosylated.



Documents:

01122-delnp-2003-abstract.pdf

01122-delnp-2003-claims.pdf

01122-delnp-2003-complete specification (granted).pdf

01122-delnp-2003-correspondence-others.pdf

01122-delnp-2003-description (complete).pdf

01122-delnp-2003-form-1.pdf

01122-delnp-2003-form-13.pdf

01122-delnp-2003-form-18.pdf

01122-delnp-2003-form-2.pdf

01122-delnp-2003-form-3.pdf

01122-delnp-2003-form-5.pdf

01122-delnp-2003-gpa.pdf

01122-delnp-2003-pct-101.pdf

01122-delnp-2003-pct-210.pdf

01122-delnp-2003-pct-304.pdf

01122-delnp-2003-pct-308.pdf

01122-delnp-2003-pct-332.pdf

01122-delnp-2003-pct-401.pdf

01122-delnp-2003-pct-402.pdf

01122-delnp-2003-pct-409.pdf

01122-delnp-2003-pct-416.pdf

01122-delnp-2003-pct-428.pdf

1122-DELNP-2003-Abstract-(27-03-2009).pdf

1122-DELNP-2003-Claims-(02-04-2009).pdf

1122-DELNP-2003-Claims-(08-04-2009).pdf

1122-DELNP-2003-Claims-(27-03-2009).pdf

1122-DELNP-2003-Correspondence-Others-(02-04-2009).pdf

1122-DELNP-2003-Correspondence-Others-(06-04-2009).pdf

1122-DELNP-2003-Correspondence-Others-(27-03-2009).pdf

1122-DELNP-2003-Form-1-(27-03-2009).pdf

1122-DELNP-2003-Form-2-(27-03-2009).pdf

1122-DELNP-2003-Form-3-(27-03-2009).pdf

1122-DELNP-2003-GPA-(27-03-2009).pdf

1122-DELNP-2003-Others-Document-(27-03-2009).pdf

1122-DELNP-2003-Petition-137-(27-03-2009).pdf

1122-DELNP-2003-Petition-138-(27-03-2009).pdf


Patent Number 234456
Indian Patent Application Number 01122/DELNP/2003
PG Journal Number 25/2009
Publication Date 19-Jun-2009
Grant Date 29-May-2009
Date of Filing 17-Jul-2003
Name of Patentee BIOGEN IDEC MA INC.,
Applicant Address 14 CAMBRIDGE CENTER, CAMBRIDGE, MASSACHUSETTS 02142,U.S.A.
Inventors:
# Inventor's Name Inventor's Address
1 DINAH W.Y. SAH, APT. 2608, 4 LONGFELLOW PACE, BOSTON, MA 02114, U.S.A.
2 R. BLAKE PEPINSKY, 30 FALMOUT ROAD, ARLINGTRON, MA 02474 USA
3 PAUL ANN BORJACK-SJODIN 46, FLORENCE ROAD, WALTHAM, MA 02453 USA
4 ANTHONY ROSSOMANDO 50 ASTI AVENUE, REVERE MA 02151, USA
5 STEPHAN S. MILLER 6 WOODSIDE LANE, ARLINGTON, MA 02474, USA
PCT International Classification Number C07K 14/00
PCT International Application Number PCT/US02/02319
PCT International Filing date 2002-01-25
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/266,071 2001-02-01 U.S.A.