Title of Invention

PEPTIDES AND COMPOUNDS THAT BIND TO A RECEPTOR

Abstract A peptide compound that binds to a thrombopoietin (TPO) receptor, wherein said compound comprises (H-IEGPTLRQ(2-Nal)LAARX10)2K-NH2, wherein X10 is selected from the group consisting of sarcosine or β-alanine, and wherein 2-nal is β-(2-naphthyl)alanine.
Full Text TDP-5001-USANP
PEFTIDES AND COMPOUNDS THAT BIND TO A RECEPTOR
CROSS REFERENCE TO RELATED APPLICATIONS
This application claims priority to U.S. Application Serial No. 60/498,740 filed on
August 28. 2003.
FIELD OF THE INVENTION
The present invention provides peptide compounds that bind to and activate the
thrombopoietin receptor (c-mpt or TPO-R) or otherwise act as a TPO agonist. The
invention has application in the fields of biochemistry and medicinal chemistry and
particularly provides TPO agonists for use in the treatment of human disease.
BACKGROUND OF THE INVENTION
Megakaryocytes are bone marrow-derived cells, which arc responsible for
producing circulating blood platelets. Although comprising cells in most species, they have > 10 times the volume of typical marrow cells. Sec Kuter.
et. al., Proc. Natl. Acad. Sci. USA 91:11104-11108 (1994). Megakaryocyies undergo a
process known as endomitosis whereby they replicate their nuclei but fail to undergo cell
division and thereby give rise to polyploid cells. In response to a decreased platelet count,
the cndomitotic rate increases, higher ploidy megakaryacytes are farmed, and the number
of megakaryocytes may incresse up to 3-fold. See Harker, J. Clin. Invest,. 47:458-465
(1968). in contrast, in response to an elevated platelet count. the cndomitotic rate
decreases, lower ploidy megakaryocytes are formed, and the number of megakaryocytes
may decrease by 50%.
The exact physiological feedback mechanism by which the mass of circulating
plutelets regulates the endomitotic rate and number of bone marrow megakaryocytes is not
known. The circulating thrombopoietic factor involved in mediating this feedback loop is
now thought to be thrombopoicim (TPO). More specifically, TPO has been shown to be
the mai`n humoral regulator in situations involving thrombocytopenia. See, e.g.. Metcalf,

Nature. 369:51 9-520) (1994). TPO has been shown in several studies to increase platelet
counts, incrcase platelet size, and increase isotope incorporation into platelets of recipient
animal. Specifically. TPO is thought to affect megakaryocytopoiesis in several ways: (1)
it produces increases in megakaryocyte size and number; (2) it produces an increase in
DNA content, in the form of polyploidy, in rnegakaryocytes; (3) it increases
megakaryoeyte endomitosis: (4) it produces increased maturation of megakaryocytes; and
(5) it produces an increase in the percentage of precursor cells, in the form of small
acetylcholinesterase-positive cells, in the bone marrow.
Platets (thrombocytes) are necessary for blood clotting. When their numbers are
very low 3 patient is al serious risk of death from catastrophic hemorrhage, TPO therefore
has potential useful application in both the diagnosis and the treatment of various
hematological disorders, for example diseases primarily due to platelet delects. Ongoing
clinical trials with TPO have indicated that TPO can be administered safely to patients. In
addition, recent studies have provided a basis for the projection of efficacy of TPO therapy
in the treatment of chrombocytopenia, and particularly thrombocytopenia resulting from
chemotherapy, radiation therapy, or bone marrow transplantation as treatment for cancer or
lymphoma. Sec, e.g. McDonald, Am. J. Ped, Hematology/Oncology, 14:8-21(1992).
The gene encoding TPO has been cloned and characterized. See Kuter. et al.. Proe.
Natl. Acad. Sci. USA, 91:11104-11108 (1994): Barley, et al. Cell 77:1117-1124 (1994);
Kaushansky et al. Nature 369:568-571 (1994); Wendling. et al.. Nature. 369:571-574
(1994); and Sarvagc et al.. Nature 369:533-538 (1994). Thrombopoietin is a glycoprotein
with al least two forms, with apparent molecular masses of 25 kDa and 31 kDa, with a
common N-terminat amino acid sequence. See, Bartley. et al.. Cell, 77:1117-1124 (1994).
Thrombopoietin appears to have two distinct regions separated by a potential Arg-Arg
cleavage site. The armno-terminal region is highly conserved in man and mouse and has
some homology with erythropoietin and interferon-a and interfcron-b. The carboxy-
terminal region shows wide species divergence.
The DNA sequences and encoded peptide sequences for human TPO-R (also
known as c-mpl) have been described. See Vigon. et al.. Proc, Natl. A cad. Sci. USA,
89:5640-5644 (1992). TPO-R is a member of the hematopoietin growth factor receptor
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family, a family characterized by a common structural design of the extracellular domain,
including four conserved C residues in the N-tenninal portion and a WSXWS motif (SEQ
ID NO:1) close to the transmembrane region. See Bazan. Proc. Natl. Acad. Sci. USA.
87:6934-6938 1990). Evidence that this receptor plays a functional role in hemaiopoiesis
inctudes observations that its expression is restricted to spleen, bone marrow, or fetal liver
in mice (see Souyri. et al, Cell 63:1137-1147 (1990)) and to megakaryocytes, platelets.
and CD34+ cells in humans (sec Methia, et al Blood 82:1395-1401 (1993)). Furthermore,
exposure of CD34 + cells to synthetic oligcinucleotides antisense to mpl RNA significantly
inhibits the appearance of megakaryocyle colonies without affecting erythroid or myeloid
colony formation. Some workers postulate that the receptor functions as a homodimer,
similar to the situation with the receptors for G-CSF and erythropoietin.
The availability of cloned genes for TPO-R facilitates the search for agonists of this
important recepior. The availability of the recomhinant receptor protein allows the study of
raccptor-litian. intcraction in a Variety of random and semi-random peptidc diversity
generation systems. These systems are disclosed in U.S. Patent Nos. 6.251,864, 6,083,913,
6121238. 5.9.12.546. 5.869.451. 6.506.362. and 6.465.430. and in Cwirla et a!., Proc.
Narl. Acad. SC. USA 87;6378-6382 (1990). each of the foregoing is incorporated herein
by reference.
The slow recovery of platelet levels in patients suffering from thrombocytopenia is
a serious problem, and has lent urgency to the search for a blood growth factor agonist able
to accelerate platelet regeneration. The present invention provides such an agonist.
SUMMARY OF THE INVENTION
The present invention is directed to defined low molecular weight peptide
compounds that have strong binding properties to the TPO-.R, can activate the TPO-R. and
potentially permit reduced side effects compared to known TPO agonists- Accordingly.
the peptide compounds can be useful for therapeutic purposes in treating, conditions
mediated by TPO [e.g., thrombocytopenia resulting from chemotherapy, radiation therapy,
or bone marrow transfusions) as well as for diagnostic purposes in studying the mechanism
3

of hematopoiesis and for the in vitro expansion of megakaroycytes and committed,
progenitor cells.
Peptide compounds suitable for therapeutic and/or diagnostic purposes have an IC50
of about 2 mM or less, as determined by, for example, the binding affinity assay set forth
in Example 301 U.S. Patent No, 5,869.451. wherein a lower IC50 correlates to a stronger
binding aflinity to TPO-R. The assay in U.S. Patent No. 5,869,451 is as follows: Binding
affinities of peptide compounds are measured in a competition binding assay. The wells of
a microtite plate are coated with 1 mg streptavidin, blocked with PBS/1 % BSA, followed
by 50 ng of biotinylated anti-receptor immobilizing antibody (Abl79), The wells are then
treated with a 1:10 dilution of soluble TPO-R harvest.. Various concentrations of peptide
compound are mixed with a constant amount ot a truncated form of TPO consisting of
residues 1-156 fused to the C-terminus of maltose binding protein (MBP-TPO156). The
peplide MBP-TPO156 mixtures are added to the TPO-R coated wells, incubated for 2 hours
at 4ºC and then washed with PBS. The amount of MBP-TPO156 that is bound an
equilibrium is measured by adding a rabbit, anti-sera directed against MBP. followed by
alkaline phosphatase conjugated goat anti-rabbit lgG. The amount of alkaline phosphatasc
in each well is then determined using. standacd methods, The, assay is conducted over a
range of peptido compound concentrations and the results are graphed such that the y axis
represents the amount of bound MBP-TPO156 and the x axis represents the concentration of
peptide compound. One can then determine the concentration at which the peptide
compound will reduce by 50% (IC50) the amount of MBP-TPO156 bound to immobilized
TPO-R, The dissociation constant (Kd) for the peptide should be similar to the measured
IC50 using these assay conditions. For pharmaceutical purposes, the peptide compounds
preferably have an IC50 of no more than about 100 M, more preferably no more than 500
nM. In a preferred embodiment, the molecular weight of the peptide compound is from
about 250 to about 8.000 daltons. If the peptide compounds of this invention are
oligomerized, dimerized and/or derivatized with a hydrophilic polymer as described herein,
the molecular weights of such peptide compounds will he substantially greater and can
range anywhere from about 500 to about 120,000 daltons, more prefetable from about
8,000 to about 80.000 daltons,
4

When used for diagnostic purposes, the pcplide compounds of the present invention
preferably are labeled with a detectable label and accordingly, the peptide compounds
without such a label serve as intermediates in the preparation of labeled peptidc
compounds.
A peptile compound meeting the defined criteria fcr molecular weight and binding
affinity for the TPO-R comprises 9 or more amino acids wherein the amino acids are
naturally occuring or synthetic (non-naturally occurring) amino acids.
Accordingly, preferred peptide compounds comprise a compound having:
(1) a molecular weight of less than abom 5000 daltons. And
(2) a binding affinity to TPO-R as expressed by an IC50 of no more than about 100 M.
wherein from zero to all of the —C(O)NH— linkages of the peptidc compound have been
replaced by a linkage selected from the group consisting of a -CH2OC(O)NR- linkage; a
phosphonate linkage: a - CH2S(O)2NR- linkage; a --CH2NR- linkage; a -C(O)NR6 -
linkage; and a —NI IC(O)NH— linkage where R is hydrogen or lower alkyl and R6 is lower
alkyl,
further wherein the N-terminus of said peptide compound is selected from the group
consisting of a -NRR1 group; a -NRC(O)R group; a -NRC(O)OR group; a -NRS(O)2R
group; a —NHC (O)NHR group; a succtnimide group; a benzyloxycarbony-NH— group;
and a benzyloxycarbonyt-NH- group having, from. 1 to 3 substituents on the phenyl ring,
selected from the group consisting of lower alkyl, lower alkoxy. chloro. and bromo, where
R. and R1 are independently selected from the group consisting of hydrogen and lower
alkyl,
and still further wherein the C-terminus of said peptide compound has the formula --
C(O)R2 where R2 is selected from the group consisting of hydroxy, lower alkoxy. and -
NR3R4 where R3 and R4 are independently selected from the group consisting of hydrogen
and lower alkyl and where the nitrogen alom of the-NR3 R4 group can optionally be the
aminc group of the N-terminus of the peptide so as to form a cyclic peptide.
and physiologically acceptable salts thereof.
5

In a related embodiment, the invention is directed to a labeled peptide compound
comprising a peptide compound described as. above having covalently attached thereto a
label capable of detection.
In out e-mbodiment, the core peptide compound comprises a sequence of amino acids
(SEQ ID NO:2):

A particularly preferred peptide compound includes the amino acid sequence I E G
P T L R Q (2-Nal) I,A A R (SAR) (SEQ ID NO; 7). wherein (2-Nal) is -(2-
naphtliyl)alanine and (Sar) is sarcosine.
In another embodiment, the peptide compounds of the present invention are
preferably dimerized or oligomerized to increase the affinity and/or activity of the
compounds. An example of a preferred dimerized peptidc compound includes, but is not
limited to. the following:

6

where X10 is a sareasine or -alanine residue (SEQ ID NO:7). The above structure can
also be represented by the following structure: (H-IEGPTLRQ(2-Nal)I, AARX10)2K-NH2.
When X10 is a sarcosine, the compound has the following structure;

wherein (2-Nal) is -(2-naphthyl)alanine and (Sar) is sarcosine (SEQ ID NO:7). This
peptide compound, which can also be represented by the following structure [H-
IEGPTIRQ(2-Nal)LAAR(Sar))2K-NIl2is referred to herein as "TPO Compound No. 1".
In yct a further enibadtmeiil. preferred pripiiue compounds for use in this invention
include peptide compounds that are covalentty attached to cne or more of" a variety of
hydropbiiic polymers. Suitable hydrcjphilie polymers include, but are noi limited 10.
poIyaiky!ethers as exemplified hy polyethylene glycoI and polypropylene glycoL
poly Laurie acitL poly gl\ colic acid, polyoxyalkenss, polvvEnylakiihol. polyvinylp>TTolidocje.
cellulose and cellulose derivatives. dcKiran and dextran derivatives, etc. as described in
U.S. Patent No 5,869.451. the entire content of1 which is hereby incorporated by reference.
The pepiide compounds described iierein are useful fbr the prevention and
I refitment oi'diseases medialed by TPO, and particularly ibr irtaijng hemato!ogical
disorders, including btii n radiation therapy, »r bune marrow transfusions. Thus, the present invention also provides
a method Ibr treating wherein a patient having a disorder that is susceptible tci treatment
with a TPO agonist receives!, or is administered, a therapeutically effective doss or amount
uf a pep tide compound of the present invent ion.
The invention also provides for pharmaceutical compositions comprising one or
more of the peptide compounds described herein and a physiologically acceptable carrier.
These pharmaceutical compositions can be in a variety or' forms including oral dosage
forms, as well ;is inhalable powders and solutions and injectable and infusihie solutions.
7

BRIEF DESCRIPTION OF THE FIGURES
Fig. 1 shows and compares the activity of TPO Compound No. 1 to a prior art
peptide compound (referred to throughout herein as "prior art peplide compound"). The
difference between TPO Compound No, ] and the prior art peptide compound Is that the
piinr art peptidt- compound has a j3-( I -naphthyl)alanine (1-NaJ) where (2-Nal) is on TPO
Compound No. 1
Fig. 2 shows and compares the activity of PEGylated TPO Compound No, 1 to
PEGylated prior an peptide compound.
Fig. 3 shows and compares the in vivo change in platelet counts in rat
demonstrating the relative potency of PEGylated TPO Compound No. 1 to PEGylated
prior an peptide compound.
Figs. 4 and 5 show and compare the number and volume of circulating platelets in a
dose dependent manner, respectively, upon the use of PEGylated prior art peptide
compound and the use of PEGylated TPO Compound No, 1.
DESCRIPTION OF SPECIFIC EMBODIMENTS
I. Definitions And General Parameters
The following definitions are set forth to illustrate and define the meaning and
scope of the various terms used to describe the invention herein.
"Agonist" refers to a biologically active ligand which binds to its complementary
biologically active receptor and activates me latter either to cause a biological response in
the receptor or to enhance preexisting biological activity of the receptor.
"Peptide compound" refers to a molecule that hydrolyzes into amino acids and/or
amino acid derivatives and/or amino acid substitutes.
"Pharnaccutically acceptable salts" refer to the non-toxic alkali metal, alkaline
earth metal, and ammonium salts commonly used in the pharmaceutical industry including
the sodium, potassium, lithium, calcium, magnesium, barium, ammonium, and protamine
zinc salts, which are prepared by methods well known in the art. The term also includes
non-toxic acid addition salts, which are generally prepared by reacting the compounds of
8

this invention with a suitable organic or inorganic acid. Representative salts include the
hydrochloride. hydrobromide, sulfate. bisulfate. acetate, oxalate. valerate, oleate, laurate,
borale, benscoate. lactate, phosphate, tosylate, citrate, maleate, fumarate. succinate. tartrate.
napsylate, and the like.
"Pharmaccutically acceptable acid addition salt" refers to those salts which retain
the biological effectiveness and properties of the free bases and which are not biologically
or otherwise undesirable, formed with inorganic acids such as hydrochloric acid,
hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and the like, and organic acids
such as acetic acid, propionic acid, glycolic acid, pyruvic acid. oxalic acid, malic acid,
makinic acid, suceinvic acid, malcic acid. furnaric acid, tartulic acid. citric acid, benzoic
acid, cinnamic acid, mandclie acid, memhanesulfonic acid, ethanesulforic acid, p-
toluenesulfonic acid, salicylic acid and the like. For a description of phanrmacculically
acceptable acid addition salts as prodrugs see Bundgaard. H., supra.
"Pharmaceutically acceptable ester" refers to those esters which retain, upon
hydrolysis of the esler bond, the biological effectiveness and properties of the carboxylic
acid or alcohol and are not biologically or otherwise undesirable. For a description of
pharmaceutically acceptable esters as prodrugs. see Bundgaard. H.. ed.. Design of
Prodrugs. Elsevier Science Publishers, Amsterdam (1985), These esters are typically
formed from the corresponding carbosylic acid and an alcohol. Generally, ester formation
can be accomplished via conventional synthetic techniques. (See. e.g.. March, Advanced
Organic Chemistry. 4th Ed. John Wiley & Sons, New York (1992). 393-396 and
references cited therein, and Mark, et al. Encyclopedia of Chemical Technology, John
Wiley &.Sons, New York (1980).) The alcohol component of the ester will generally
comprise (i) a C2 -C12 aliphatic alcohol that can or can not contain one or more double
bonds and can or can not contain branched carbons or (ii) a C2 -C12 aromatic or
heteroaromatic alcohols. This invention also contemplates the use of those compositions
which are both esters as described herein and at the same nime are the pharmaceutically
acceptable acid addition salts thereof.
" Pharmaceutically acceptable amide" refers to those amides which retain, upon
hydrolysis of the amide bond, the biological effectiveness and properties of the carboxylic
9

acid or amine and are not biologically or otherwise undesirable. For a description of
pharmaceutically acceptable amides as prodrugs, see Bundgaard, H ed. Design of
Prodrugs, Elsevicr Science Publishers, Amsterdam (1985). These amides are typically
formed from the corresponding carboxylic acid and an amine. Generally. amide formation
can be accomplished via conventional synthetic techniques. (See. e.g.. March, Advanced
Organic Chemistry. 4th Ed., John Wiley & Sons, New York (1992), p. 393 and Mark, ct al.
Encyclopedia of Chemical Technology, John Wiley & Sons, New York (1980).) This
invention also contemplates the use of those compositions which are both amides as
described herein and at the same time are the pharmaceutically acceptable acid addition
salts thereof.
"Pharmaceutically or therapeutically acceptable carrier" refers to a carrier medium
which does not interfere with the effectiveness of the biological activity of the active
ingredients and which is not toxic to the host or patient.
"Stereoisomer" refers to a chemical compound having the same molecular weight,
chemical composition, and constitution as another, but with the atoms grouped differently.
That is, certain identical chemical moieties arc al different orientations in space and.
therefore, when pure, have the ability to rotate the plane of polarized liyht. However. some
pure slereoisomeri; may have an optical rotation that is so slight that it is undetectable with
present instrumentation. The compounds of the instant invention may have one or more
asymmetrical carbon atoms and therefore include various stereoisomers. All stereoisomers
are included within the scope of the invention.
"Therapeutically- or pharmaceutically-effective amount" as applied to the
compositions of the instant invention refers to the amount of composition sufficient to
induce a desired biological result. That result can be alleviation of the signs; symptoms, or
causes of a disease, or any other desired alteration of a biological system. In the present
invention, the result will typically involve a decrease in the immunological and/or
inflammatory responses to infection or tissue injury.
Amino acid residues in peptides are abbreviated as follows: Phenylalanine is Phe or
F; Lcucine is Leu or 1: Isoleucine is He or I; Methionine is Mel or M: Valine is Val or V:
10

Serine is Ser or S: Proline is Pro or P; Threonine.is Thr or I; Alanine is Ala or A; Tyrosine
is Tyr or Y; Histidine is His. or H; Glutamine is Gln or Q; Asparaginc is Asn or N: Lysine
is Lys or K; Aspartic Acid is Asp or D:Glutamic Acid is Glu or E: Cystcinc is Cys or C;
Tryptophan is Trp or W: Arginine is Arg or R: and Glycine is Gly or G. Additionally, t-
Buo is tert-bulyloxy, Bzl is benzyl, CHA is cyclohexylamine. Ac is acetyl. Me is methyl,
Pen is penicillamine. Aib is aminoisobutyric acid, Nva is norvaline. Abu is aminobutyric
acid, Thi is thienylalanine. OBn is O-benzyl, and hyp is hydroxyproline.
Peptide analogs are commonly used in the pharmaceutical industry as non-peptide
drugs with properties analogous 10 those of the template peptide. These types of non-
peptide compounds are termed "peptide mimetics" or "peptide mimetics" or
"peptidomirnetics" (Luthman. et al.. A Textbook of Drug Design and Development.
14:386-406, 2nd Ed,. Harwood Academic Publishers (1996); Joachim Grante, Angew.
Chem. Int. F.d. Engl, 33:1699-1720 (1994); Fauchere, J., Adv. Drug Res.. 15:29 (1986):
Vober and Freidinger TINS, p, 392 (1985); and Evans. et al. I. Med. Chem. 30:1229
(1987). which are incorporated herein by reference). Peptide mimetics that are structurally
similar to therapeutically useful peptides may be used to produce an equivalent or
enhanced therapeutic or prophylactic effect. Generally, peptidomimeties are structurally
similar to a paridigm polypeptidc (i.e., a polypeptide that has a biological or
pharmacylogical activity), such as naturally-occurring receptor-binding polypeptide. but
have one or more peptide linkages optionally replaced by an alternative linkage such as-
CH2NH—. —CH2S —. etc. by methods known in the art and further described in the
following references: Spatula. A. F. in Chemistry and Biochemistry ot Amino Acids.
Pcptides. and Proteins. B. Wcinslein. eds., Marcel Dekker, New York. p. 267 (1983);
Spatola. A. F. Vega Data (March 1983), Vol. 1. Issue 3, Peptide Backbone Modifications
(general review); Morley, Trends Pharm. Sci. pp. 463-468 (1980), (general review):
Hudson, et al.. Int. J- pept. Prot. Res.. 14:177 185 (1979); Spatola, et al.. Life sci.
38:1243-1249 (1986): Hann. J. Chem. Soc. Perkin Trans. 1. 307-314 (1982): Almquist. cl
al.. J. Med. Chem.. 23:1392-1398. (1980); Jennings-White, el al.. Teirahedron Lett.
23:2533 (1982:; Szelke. et al.. European Appln. EP 45665 (1982); Holladay. et al..
Tetrahedron lelt 24:4401-4404 (1983): and Hruby, Life Sci.. 31:189-199 (1982); each of
11

which is incorporated herein by reference. A particularly preferred non-peptidc linkage is -
CH2NH—, Such peptide mimetics may have significant advantages over poiypeptide
embodiments, including, for example: more economical production, greater chemical
stability, enhanced pharmacological properties (half-life, absorption, potency, efficacy,
etc.), altered specificity (e.g... a broad-specirum of biological activities), reduced
satigenicity, and others. Labeling of peptidomimetics usually involves eovalent attachment
of one or more labels, directly or through a spacer (e.g., an amide group), to non-
interfering position(s) on the peptidomimetic that arc predicted by quantitative structure
activity data and/or molecular modeling. Such non-interfering positions generally are
positions that do not form direct contacts with the macromolecules(s) (e.g..
immunoglobulin superfamily molecules) to which the peptidomimetic; binds to produce the
therapeutic effect. Derivitization (e,g,. labeling) of peptidomimetics should not
substantially interfere with the desired biological or pharmacological activity of the
peptidomimetic. Generally, peptidomimetics of receptor-binding peptides bind to the
receptor with high affinity and possess detectable biological activity (i,e,, are agonislic or
antagonistic to one or more receptor-mediated phenotypic changes).
Systematic substitution of one or more amino acids of a consensus sequence with a
D-amino acid of the same type (e.g.. D-lysine in place of L-tysine) may be used to generate
more stable peptides. In addition, constrained peptides comprising a consensus sequence or
a substantially identical consensus sequence variation may be generated by methods
known in the art (Rizo. et al.. Ann. Rev. Biochem., 61 ;387 (1992). incorporaied herein by
reference); for example, by adding internal cysteine residues capable of forming
intramolecular disulfide bridges which eyelize the peptide.
"Detectable label" refers to materials, which when covalently attached to the
peptide compounds of this invention, permit detection of the peptide compounds in vivo in
the patient to whom the peptide compound has been administered. Suitable detectable
labels are well known in the art and include, by way of example, radioisotopes, fluorescent

of the label at the amount of label employed. Selection of the label relative to such factors
is well within the skill of the art.
Covalent attachment of the detectable label to the peptide compound is
accomplished by conventional methods well known in the art. For example, when the 125
radioisotopc is employed as the detectable label, covalent attachment of 125 to the peptide
compound can be achieved by incorporating the amino acid tyrosine into the peptide
compound and then iodinating the peptide compound (see. e.g.. Weaner, el at.. Synthesis
and Applications of Isotopically Labelled Compounds, pp. 137-140 (1994)). Incorporation
of tyrosine to the N or C terminus of the peptide compound can be achieved by well known
chemistry. Likewise. 42P can be incorporated onto the peptide compound as a phosphate
moiety through. for example; a hydrosyl group on the peptide compound using
conventional chemistry.
II. Overview
The present invention provides peptide compounds that bind to and activate the
TPO-R-or otherwise behave as a TPO agonist. These peptide compounds include "lead"
peputie compounds and "derivative" peptide compounds constructed so as to have the
same or similar molecular structure or shape as the lead peptide compounds but that differ
from the lead peptide compounds either with respect to susceptibility to hydrolysis or
prolealysis and/or with respect to other biological properties, such as increased affinity for
the receptor. The present invention also provides compositions comprising an effective
amount of a peptide compound, and more particularly a peptide compound, that ia useful
for treating hematological disorders, and particularly, thromboeytopenia associated with
chemotherapy, radiation therapy, or bone marrow transfusions.
It was found that the eore peptide compound can comprises a sequence of amino
acids (SEQ ID NO:2): X9 X8 G X1 X2 X3 X4 X5 X6 X7. where X6 may be 3-(2-
naphthyl)alanine and where X9 is A, C,E, G, I, L . M, P, R, Q, S, T, or V; and X8 is A. C.
D, E. K. L. Q.R S. T, or V, More preferably, X9 is A or I: and X8 is D, E, or K. Further
X1 is C. L. M, P, Q, V: X2 is F, K, L. N. Q, R, S. T or V; X3 is C F. I. L. M. R. S. V or W:
13

X4 is any of the 20 genetically coded L-amino acids; X5 is A, D, E, G, K, M, Q, R, S, T, V
or Y: and X7 is C, G, I, K, L, M, N, R or V.
However, as described funher herein, it has been found that by replacing Xo with -
(2-naphthyl)alanine the compound provides different properties from the compound
containing -(1 -naphthyl)alanine. Accordingly, a particularly prefrred peptide includes
the amino acid sequence (SEQ ID NO:7): I E G P T I. R Q (2-Nal) LAA R(Sar).
In another embodiment, the peptide compounds of the present invention are
preferahly dimcrized or oligomerized to increase the affinity and/or activity of the
compounds. An example of a preferred dimerized peptide compound includes, but is not
limited to. the following:

where X10 is a sarcosine or -alanine residue (SEQ ID NO:7). It should be noted that one
X10 residue can be sartosine and the other residue can be -alaninc. The above structure
can also be represented by the following: (H-IEGPTIRQ(2-Nal)LAARX10))2K-NH2.
A preferred peptide compound is as follows:

wherein (2-Nal) is -(2-naphthyl)alanine and (Sar) is sarcosine (SEQ ID NO;7), This
peptide compound is referred to herein as "TPO Compound No. 1"
14

Peptide compounds having an IC50 of greater than about 100 mM lack sufficient
binding to permit use in either the diagnostic or therapeutic aspects of this invention.
Preferably, for diagnostic purposes, the peptide compounds have an IC50 of about 2 mM or
less and for pharmaceutical purposes, the peptide compounds have all lC50 of about 100
pM or less.
Fig. 1 compares the activity of three different batches of TPO Compound No, 1
with one batch of prior art peptide compound using standard relative luminescent units
assay techniques. The assay employs murine cells engineered to stably express the human
TPO rcctptor and a fuciferase reporter construct driven by the fos promoter. The
differcnce between TPO Compound No. 1 and the prior art peptide compound is that the
prior art peptide compound has a (1-naphthyl)alanine (1 -Nal) where the (2-Nal) is on
TPO Compond No. 1. TPO Compound No. 1 is referred to as 2-Nal and the prior art
peptide compound is referred to as 1 -Nal (Prior Art) in Fig. 1. As shown from Fig. 1. the
activity is similar for each compound.
Fig. 2 compares the activity of several different batches of PHGylated TPO
Compound No. 1 (pegylation of the compounds of the present invention is described in
more. detail below) to several batches of PEGylated prior art peptide. compound, Both
batches of the PEGylated prior art peptide compound show high activity with essentially
the same level of activity as the un-PEOylated prior art peptide compound. The remaining
lines illustrate the activity of different batches of PEGylated TPO Compound No. 1. As
shown by Fig. 2. in this model, the latter have less activity relative to the PEGylated prior
art peptide compounds. PEGylated TPO Compound No. 1 is referred to as PEG-2-Nal and
PEGylatcd prior an peptide compound is referred to as PEG-1-Nal (Prior Art) in Fig. 2.
Pig, 3 demonstrates the relative potency of PEGylated prior art peptide compound
and PEGylated TPO Compound No. 1. Through a rat model Fig. 3 shows the in-vivo
change in plaielet counts after administration of PBGylated prior art peptide compound and
PEGylmcd TPO Compound No. 1. As shown by Fig. 3, we highest dose of the PEGylated
TPO Compound No. 1 has the same activity as the lowest dose of the PEGylated prior an
peptide compound. A less potent compound may provide a less drastic stimulus to the
target cell, which .could reduce the risk of side effects caused by overstimulation of the
15

terget cell such as exacerbated thrombocytopenia following subsequent cycle of
chemotherapy, PEGyiated TPO Compound No. 1 is refemed to as PFG-2-Nal and
PEGyiated prior art peptide compound is referred to as PEG- 1-Nal (Prior Art) in Fig. 3,
Figs, 4 and 5 show the results of a head-to-head dose response stndy of a
PEGylated prior art peptide compound and PEGylated TPO Compound No. 1 in normal
mice. PEGylated TPO Compound No. 1 is referred to as PEG-2-Nal and PEGylated prior
art peptide compound is referred to as PEG-1-Nal (Prior Art) in Figs. 4 and 5, Fig. 4
shows increases in platelet levels and Fig. 5 shows Mean Platelet. Volume six (6) days
following treatment. The dose range was from 10 to 3000ug/kg. Both peptidc compounds
increased the number of circulating platelets in a dose-dependent manner with increases
relative 10 the control group observed at doses as low as 30ug/kg for both compounds. At
the maximal response, these peptide compounds elevated platelet counts to levels that were
up to 4-fold greater than control values. The dose-response curves for these peptide
compounds were very similar indicating that in this model there was essentialiy no
difference between the two test articles based on these endpoints.
IV. Preparation of Peptidc Compounds
A. Solid Phase Synthesis
The peptide campounds of the invention can be prepared.by classical methods
known in the art. for example, by using standard solid phase techniques. The standard
methods include exclusive solid phase synthesis, partial solid phase synthesis methods,
fragment condensation, classical solution synthesis, and even by recombinant DNA
technology. See, e.g., Merrifield, J. Am. Chem.Soc, 85:2149 (1963), incorporated herein
by reference. On solid phase, the synthesis is typically commenced from the C-terminal
end of the peptide using an alpha-ami no protected resin. A suitable starling material can be
prepared, for instance, by attaching the required alpha-amino acid to a chloromethylated
resin, a hydroxymelhyl resin, or a benzhydrylamine resin. One such chloromethylated
resin is sold tinder the tradename BID-BEADS SX-1 by Bio Rad Laboratories, Richmond,
CA. and the preparation of the hydioxymethyl resin is described by Bodonszky, et al.
Chem. ind. (London), 38;l597 (1996). The benzhydrytaminc (BHA) resin has bcen
16

described by Pietta and Marshall, Chem. Commn 650 (1970) and is commercially
available from Reckman Instruments, Inc., Palo Alto, Calif., in the hydrochloride form.
Thus, the peptide compounds of the invention can he prepared by coupling an
alpha-ammo piousted amino acid to the chloromethylated resin with the aid of, for
example, cesium bicarbonate catalyst, according to the method described by (Hsin. Helv.
Chim. Acta., 56:1467 (1973). After the initial coupling, the alpha-amino protecting group
is removed by a Choice of reagents including trifluoroacetic acid (TFA) or hydrochloric
acid (MCI) solutions in organic solvents at room temperature.
The alpha-amino protecting groups are those, known to be useful in the art of
step wise synthesis of pe prides. Included are acyl type protccting groups (e.g., formyl,
trifluoroaceiyl. acetyl). aromatic urethane type protecting groups (e.g., benzyloxycarboyl
(Cbz) and subsututed Cbz), aliphatic urethane protecting groups (e.g.. t-butyloxycarbonyl
(Boc). isopropyloxycarbonyl. cyclohcxyloxycarbonyl) and alkyl type protecting groups
(e.g.. benzyl, tr.phenylmethyl). Boc and fmoc are preferred protecting groups. The side
chain prolecting group remains intact during coupling and is nol split off during the
deprolection of the aumino-terminus protecting group or during coupling. The side cham
protecting group must be removable upon the completion of the synthesis of the final
peptide and under reaction conditions that will not alter the target neptidc.
The sida- chain protecting groups for Tyr include tetrahydropyranyl. tert-butyl,
trityl, benzyl, Cbz. Z.-Br--Cbz., and 2.5-diehlorobenzyl. The side chain protccting groups
for Asp include benzyl. 2.6-dichlorohonzyl methyl. ethyl, and cyclohexyl. The side chain
protecting groups fur Thr-and Ser include acetyl, benzoyl, trityl. tctrahydropyranyl, benzyl,
2.6-dichlorobenzyl, and Cbz. The side chain protecting group for Thr and Ser is benzyl.
The side chain protecting groups for Arg include nitro, Tosyl (Tos), Cbz.
adamantyloxycarbonyl meaitoylsulfonyl (Mts), or Boc. The side chain protecting groups
for Lys includt Cbz, 2-chlofobenzyloxycarbonyl (2-CI—Cb2), 2-bromobetuyloxycarbpnyI
(2-BrCbz) Tos, or Boc.
After removal of the alpha-ammo protecting group, the remaining protected amino
acids are coupled step wise in the desired order. An excess of each protected amino acid is
17

generally used with an appropriate csrboxyl group activator such as
dicydohexytearbodiimide (DCC) in solution, for example, in methylene chloride
(CH2Cl2). dimethyl formarnide (DMF) mixtures.
After the desired amino acid sequence has been completed, the desired peptide is
decoupled from the resin support by treatment with a reagent such as trifluoroacetic acid or
hydrogen fluoride (HF). which not only cleaves the peptide from the resin, but also cleaves
all remaining side chain protecting groups. When the chloromethylated resin is used,
hydrogen fluoride treatment results in the formation of the free peptidc acids. When the
bcnzhydrylarnine resin is used, hydrogen fluoride treatment results directly in the free
peptide amide. Alternatively, when the chtoromelhylated resin is employed, the side chain
protected peptide can be decoupled by treatment of the peptide resin with ammonia to give
the desired side chain protected amide or with an alkylaminc to give a side chain protected
ailkylamide or dialkylamide. Side chain protection is then removed in the usual fashion by
treatment with hydrogen fluoride to give the free amides, alkylamides, or dialkylamides.
These solid phase peptide synthesis procedures arc well known in the art and
further described by John Morrow Stewart and Janis Dillaha Young, Solid Phase Peptide
Syntheses (2nd Ed., Pierce Chemical Company. 1984).
B. Synthetic Amino Acids
These proeedures can also be used to synthesize pcptidcs in which amino acids
other than the 20 naturally occurring, genetically encoded amino acids are substituted at
one. two, or more positions of any of the compounds of the invention. One can replace
the naturally occurring side chains of the 20 genetically encoded amino acids (or D amino
acids) with other side chains, for instance with groups such as alkyl. lower alkyl, cyclic 4-,
5-. 6-, to 7-membered alkyl amide, amide lower alkyl amide di(lower alkyl), lower
alkoxy, hydroxy, carboxy and the lower ester detivatives thereof. and with 4-, 5-; 6-, to 7-
membered hetercocyclic. In particular, prolinc analogs in which the ring size-of the proline
residue is changed from 5 members.to 4, 6, or 7 members can be employed. Cyclic groups
can be saturated or.unsaturatcd, and if unsaturated, can be aromatic or non-aromatic.
Heterocyclic groups preferably contain one or more nitrogen, oxygen, and/or sulphur
18

heteroatoms. Examples of such groups include the furazanyl furyl, imidazolidinyl.
imidazolyl. imidazolinyl, isothiazolyl. isoxazolyl, morpholinyl (e.g. morpholino). oxazolyl
piperazinyl (e.g. 1-piperazinyl), piperidyl (e.g. I-piperidyl, piperidino) pyranyl pyrazinyl.
pyrazolidinyl. pyrazolinyl, pyrazolyl pyridazinyl. pyridyl. pyriinidinvi. pyrrolidinyl (e.g.
l-pyrrolidinyl), pyrrolinyl pyrrolyl, thiadizoly.thiazolyl, thienyl. thiomorpholinyl(e.g.
thiomorphinol), and triazolyl. These heterocyclic groups can be substituted or
unsubstituted. Where a group is subslituted. the .substituted can be alkyl. alkoxy. halogen-
oxygen or substituted or unsubstituted phenyl
One can also readily modify the peptides of the instant invention by
phosphorylation (see. e.g. W. Bannwarth. et al. Biorganic and Medicinal Chemistry
Letters, 6(17);2141-2146 (1996)), and other methods for making peptide derivatives of the
compounds of the present invention are described in Hruby. et al., Biochem. J..
268(2):249-262 (1990). Thus, the peptide compounds of the invention also serve as a basis
to prepare peptide mimetics with similar biological activity.
C Terminal Modifications
Those of skill in the art recognize that a variety of techniques art available for
constructing peptide compounds with the same or similar desired biological activity as the
corresponding peptide compound but with more favorable activity than the peptide
compound with respect to solubility, stability, and susceptibility to hydrolysis and
proleolysis. See. for example, Morgan, et al. Ann. Rep. Med. Chem,, 24:243-252 (1989),
The following describes methods for preparing peptide compounds modified al the N-
terminal amino group, the C-terminal carboxyl group, and/or changing one or more of the
amido linkages in the peptide to a non-amido linkage. It being understood that two or more
such modifications can be coupled in compound compound structure (e.g. modification at
the C-terminal carboxy) group and inclusion of a-CH2 -carbamate linkage between two
amino adds in the peptide compound).
1. N-terminal Modifications.
The peptide compounds typically are synthesized as the free acid but, as noted
above, could be readily prepared as the amide or ester. One can also modify the amino
19

and/or carboxy terminus of the peptide compounds of the invention to produce other
compounds of the invention. Amino terminus modifications include methylation.
acetylation, adding a benzyioxycarbonyl group, or blocking the amino terminus with any
blocking group containing a carboxylate functionality defined by RCOO— where R is
selected from the group consisting of naphthyl acridinyl, steroidyl and similar groups.
Carboxy terminus modifications include replacing the free acid with a carbuxamide group
of forming a cyclic XXXat the carboxy terminus to introduce structural constraints.
Amino terminus modifications are as recited above and include alkylating,
acctylating, adding a carbobenzoyl group, forming a sucinimide group, etc. (See, eg,.
Murray,et.al., Burgier'.s Medicinal Chemistry and Drug Discovery. 5th .ed., Vol. 1. Manfred
iWolf ed John Wiley and Sons, Inc. (1995),) Specifically, theN-terminal amino group
can then be reacted as follows;
(a) to form an amide group of the formula RC(O)NH- where R is as defined above by
reaction with an acid halide or symmetric anhydride- Typically, the reaction can be
conducted, by contacting about equimolar or excess amounts (e.g.. about 5 equivalents) of
an acid halide to the peptide in an inert diluent (e.g. dichloromethane) preferably
containing an excess (e.g.. about 10 equivalents) of a tertiary amine. such as
diisopropylethylamine, to scavenge the acid generated during reaction. Reaction conditions
are otherwise conventional (e.g., room .temperature for 30 minutes). Alkylation of the
terminal amino to provide for a lower alkyl N-substitution followed by reaction with an
acid halide as described above will provide for N-alkyl amide group of the formula
RC(O)NR-;
(b) to form a sucinimide group by reaction with succinic anhydride. As before, an
approximately equimolar amount or an excess of succinic anhydride (e.g.. about 5
equivalents) can be employed and line amino group is converted to the succinimide by
methods well known in the art including the use of an excess (e.g.. ten equivalents) of a
tertiary amine such as diisopropylethylamine in a suitable inerl solvent (e.g..
dichloromethane), See, for example. Wollenberg, et al U.S. Pal, No. 4.612,132 which is
incorporated herein by reference in its entirety. It is understood that the succinic group can
20

be substituted with, for example, alkyl or —SR substiiuems which are prepared in a
conventional manner to provide for substituted succintmide at the N-terminus of the
peptide. Such alkyl substituents are prepared by reaction of a lower olefin with maleic
anhydride in the manner described by Wollenberg, et al., supra and -SR substituents are
prepared by reaction of RSl-1 with maleic anhydride where R is as defined above;
(c) to form a benzyloxycarbonyl-NH- or a substituted benzyloxycarbonyl-NI I— group by
reaction with approximately an equivalent amount or an excess of CBZ—C] (i.e.,
benzyloxycarbonyl chloride) or a substituted CBZ--CI in a suitable inert diluent (e.g.,
dichloromethane) preferably containing a tertiary amine to scavenge the acid generated
during the reaction;
(d) to form a sulfonamide group by reaction with an equivalent amount or an excess (.e.g.,
5 equivalents) of R—S(O)2 Cl in a suitable inert diluent (dichloromethane) to convert the
terminal amine into a sulfonamide where R is as defined above. Preferably, the inert
diluent contains excess tertiary amine (e.g.. ten equivalents) such as
diisopropylethylamine. to scavenge the acid generated during reaction. Reaction conditions
are otherwise conventional (e:g.. room ternperature for 30 minutes);
(e) to form a carbomate group by reaction with an equivalent amount or an excess (e.g.. 5
equivalents) of R-OC(O)Cl or R-OC(O)OC6 H4 -p-NO2 in a suitable inert diluent (e.g,
dichloramethane) to convert the terminal amine into a carbamate where R is as defined
above. Preferably, the inert diluent contains an excess (e.g,, about 10 equivalents) of a
tertiary amine, such as diisopropylethylamine. to scavenge any acid generated during
reaction. Reaction conditions are otherwise conventional (e.g., room temperature for 30
minutes); and
(f) to form a urea, group by reaction with an equivalent amount or an excess (e.g., 5
equivalents) of R—N=C=O in a suitable inert diluent (e.g., dichloromethane) to convert
the terminal amine into a urea (i.e., RNHC(O)NH--) group where R is as defined above.
Preferably, the inert diluent contains an excess (e.g.. about 10 equivalents) of a tertiary
21

amine. such as dirsoprapylethylamine.Reaction conditions are otherwise conventional
(e.g.. room temperature for about 30 minutes).
2. C-Terminal Modifications
In preparing peptide compounds wherein the C-terminal carboxyl group is replaced
by an ester (i.e., -C(O)OR where R is as defined above), the resins used to prepare the
peptide acids are employed, and the side chain protected peptide is cleaved with base and
the appropriate alcohol, e.g.. methanol. Side chain protecting groups are then removed in
the usual fashion by treatment with hydrogen fluoride to obtain the desired ester.
In preparing peptide compounds wherein the C-terminal carboxyl group is replaced
by the amide — C(O)NR3R-1 a benzhydrylamme resin is used as the solid support for
peptide synthesis. Upon completion of the synthesis, hydrogen fluoride treatment to release
the peptidc from the support results diractly in the free peptide amide (i.e., the C-terminus
is —C(O)NH2). Alternatively, use of the chloromcthytated resin during peptide synthesis
coupled with reaction with ammonia to cleavo the side chain protected peptide from the
support yields the free peptide amide and reaction with an alkyiamine or a dialkylamine
yields a side chain protected alkylamide or dialkylamide (i.e., the C-terminus is-
C(O)NRR' where R and R are as defined above). Side chain protection is then removed in
the usual fashion by treatment with hydrogen fluoride to give the free amides, alkylamides,
or dialkylamides.
One can also cyclize the peptide compounds of the invention, or incorporate a
desamino or descarboxy residue at the terminul of the peptide compound, so that there is no
terminal ami no or carboxyl group, to decrease susceptibility to proteases or to restrict the
conformation of the peptide compound. C-terminal functional groups of the peptide
compounds of the present invention include amide, amide lower alkyl, amide di(lower
alkyl), lower alkoxy, hydroxy, and carboxy, and the lower ester derivatives thereof and, the
pharmaceutically acceptable salts thereof.
In addition to the foregoing N-terminal and G-tenninal modifications, the peptide
compounds of the invention including peptidomimeties, can advantageously be modified
22

with or covalently coupled to one or more of a variety of hydrophilic polymers. It has
been found that when the peptide compounds are den XXX with a hydrophilic polymer,
their solubility and circulation half-lives are increased and their immunogeniety is
masked. The foregoing can be accomplished with little, if any, diminishment in their
binding activity. Nonproteinaceous polymers suitable for use in accordance with the
present invention include, hut are nt limited in. polyalkylethers as exemplified by
polyethylene glycol and polypropylene glycol. polylactic acid, polyglycolic acid,
polyoxyalkenes polyvinylalcohol, polyvinylpyrolidone, cellulose and cellulose
derivatives, dextran and dextran derivatives, etc. Generally, such hydrophilic polymers
have an average molecular weight ranging from about 500 to about 100.000 dallons. more
preferably from about 2.000 to about 40.000 daltons and, even more preferably, from about
5,000 to about 20,000 daltons. In preferred embodiments, such hydrophilic polymers have
an average molecular weight. of about 5.000 daltons, 10,000 daltons and 20,000 daltons.
The peptide compounds of the invention can be derivatized with or coupled to such
polymers using any of the methods set forth in Zallipsky, S'., Bioconjugate Chem.. 6:150-
165 (1995); Monfstrdini. C,et al, Bioconjugate Chem., 6:62-69 (1995); U.S. Pat, No,
4.640,835; U.S. Pat. No. 4,496,689; U.S. Pat. No. 4301.144; U.S. Pat. No. 4,670.417; U.S.
Pat. No. 4.791,192; U.S. Pat No, 4,179;337 or WO 95/34326, all of which are
incorporated by reference in their entirety herein.
In a presently preferred embodiment, the peptide compounds of the present
invention are derivatized with polyethylene glycol (PF.G)- PEG is a linear, water-soluble
polymer of ethylene oxide repeating unit with two terminal hydroxyl groups. PEGs are
classified by their molecular weights which typically range from about 500 daltons to
about 40;000 daltons. In a presently preferred embodiment, the PEGs employed have
molecular weights ranging from 5,000 daltons to about 20,000 daltons, PEGs coupled to
the peptide compounds of the present invention can be either branched or unbranched.
(See, e.g.. Monfardini. C, et al., Bioconjugate Chem,. 6:62-69 (1995)). PEGs are
commercially available from Shearwater Polymers. Inc. (Huntsville Ala,) now part of
Nektar Therapeutics (San Carlo. CA), Sigma Chemical Co. and other companies. Such
PEGs include, but are not limited to, monomethoxypolyethylene glycol (MePEG-OH),
23

monomethoxy polyethylene glycol-suceinate (MePEG-S), monomethoxypolyethylene
glycol-succirdmidyl succinate (MePEG-S-NHS), monomethoxy polyethylene glycol-amine
(MePEG-NH2). monomethoxy polyethylene glycol-tresylate (MePEG-TRES), and
monomethoxy polyethylene glycol-imidazolyl-carbonyl (MePEG-IM),
Briefly, in one embodiment. the hydrophilie polymer which is employed, e.g.,
PEG. is preferably capped at one end by an unreactive group such as a methoxy or ethoxy
group. Thereafter, the polymer is activated at the other end by reaction with a suitable
activating agent, such as cyanuric halides (e,g,. cyanuric chloride, bromide or fluoride),
diimadozle- an anhydride reagent (e.g., a dihalosuccinic anhydride, such as
dibromosucinic anhydride), acyl azide, p-diazoiumbenzyl ether, 3-(p-diazoniumphenoxy)-
2-hydroxypropylethcr) and the like. The activated polymer is then reacted with a peptide
compound of the present invention to produce a peptide compound derivatized with a
polymer. Alternatively, a functional group in the peptido compounds of the invention can
be activated for reaction with the polymer, or the two groups can be joined in a concerted
coupling reaction using known coupling methods. It will be readily appreciated that the
peptide compounds of the invention can be derivatized with PEG using a myriad of other
reaction schemes known to and used by those of skill in the art.
When thepeptide compounds are derivatized with.a hydrophilic polymer, their
solubility and circulation half-lives are increased and their immunogenicity 'is decreased.
The foregoing can be accomplished with little, if any. loss in biological activity. In
preferred embodiments, the derivatized peptides have an activity that is 0,1 to 0.01 -fold
that of the unmodified peptides. In more preferred embodiments, the derivgtized peptides
have an activity that is 0.1 to 1-fold that of the unmodified peptides. In even more
preferred embodiments; the derivatized peptides have an activity that is greater than the
unmodified peptides,
D. Backbone Modifications
Other methods for making peptide derivatives of the compounds of the present
invention are described in llruby: et al. Biochem J., 268(2):249-262 (1990). incorporated
herein by reference. Thus, the peptide compounds of the, invention also serve as structural
24

models for non-peptidte compounds with similar biological activity. Those of skill in the
art recognize that a variety of techniques are available for constructing compounds with the
same or similar desired biological activity as the lead peptide compound but with more
favorable activity than the lead with respect to solubility, stability, and susceptibility to
hydrolysis and proteolysis. See Morgan, et al.. Ann. Rep. Med. Chem., 24:243-252 (1989),
incorporated herein by reference. These techniques include replacing the peptide backbone
with a backbone composed of phosphonates. amidates carbamates, sulfonamides.
secondery amines, and N-methylamino acids.
Suitable reagents include, for example, amino acid analogues wherein the carboxyl
group of the amino acid has been replaced with a moiety suitable for forming one of the
above linkages.
Similarly, replacement of an amido linkage in the peptide with a phosphonate
linkage can be achieved in the manner set forth in U.S.Patent Nos. 5.359,115 and
5,420,328, the disclosures of which are incorporated herein by reference in their entirety.
E. Disulfide Bond Formation
The compounds of the present invention may exist in a cyclized form with an
intramolecular disulfide bond between the thiol groups of incorporated cysteines, if
present. Alternatively, an intermolecular disulfide bond between the thiol groups of the
cysteines can be produced to yield a dimeric (or higher oligomeric) compound. One or
more of the cysteine residues may also be substituted with a homocysteine.
V. Utility
The peptide compounds of the invention are useful in vitro as unique tools for
understanding tyhe biological role, of TPO, including ths evaluation of the many factors
thought to influence, and be influenced by, the production of TPO and the receptor binding
process, The present peptide compounds are also useful in the development of other
compounds that bind to and activate the TPO-R because the present peptide compounds
provide important information on the relationship between structure and activity that
should facilitate such development.
25

The peptide compounds are also useful as: competitive binders in assays to screen
for new TPO receptor agonists. In such assay embodiments, the peptide compounds of the
invention can be used without modification or can be modified in a variety of ways; for
example, by labeling, such as covalently or non-covalently joining a moiety which directly
or indirectly provides a detectable signal. In any of these assays, the. materials thereto can
be labeled either directly or indirectly. Possibilities for direct labeling include label groups
such as radiolabels such as XXX. enzymes (U.S. Pat. No. 3,645.090) such as peroxidase and
alkine phosphatase. and fluorescent lables (U.S. Pat. No. 3,940,475) capable of
monitoring the change in fluorescence intensity, wavelength shift, or fluorescence
polarization. Possibilities for indirect labeling include biotinylation of one constituent
followed by binding to avidin coupled to one of the above label groups. The peptide
compounds may also include spacers or linkers in cases where die peptide compounds are
to be attached to a-solid support.
Moreover, based on their ability to bind to the IPO receptor. ihe peptide
compounds of the present invention can be used as reagents for detecting TPO receptors on
living cells, fixed cells, in biological fluids. in tissue homogenates. in purified, natural
biological materials, etc. For example, by labelling such peptide compounds, one can
identify cells having TPO-R on their surfaces. In addition, based on their ability to bind the
TPO receptor, the peptide compounds of the present invention can be used in in situ
staining, FACS (fluorescene-activated cell sorting), Western blotting, El,ISA. etc. In
addition, based on their ability to bind to the TPO receptor, the peptide compounds of the
present invention can be used in receptor purification, or in purifying cells expressing TPO
receptors on the cell surface (of inside permeabilized cells).
The peptide compounds of the present invention can also be utilized as commercial
reagents for various medical research and diagnostic uses. Such uses include but are not
limited to: (1) use as a calibration standard for quantiiating the activities of candidate TPO
agonists in a variety of functional assays; (2) use to maintain the proliferation and growth
of TPO-dependent cell lines; (3) use in structural analysis of the TPO-receptor through co
crystallization; (.4) use to investigate the mechanism of 'TPO signal transduction/receptor
activation; and (5) other research and diagnostic applications wherein the TPO-receptor is
26

preferably activated or such activation is conveniently calibrated against a known quantiny
of a TPO agonist, and the like.
The peptide compounds of the present invention can be used for the in vitro
expansion of megakaryocytes and their committed progenitors, both in conjunction with
additional cytokines or on their own. See, e.g., DiGiusto, et al., PCT Publication No.
95/05843, which is incorporated herein by reference. Chemotherapy and radiation
therapies cause thrombocytopenia by killing the rapidly dividing, more mature population
of megakaryocytes. However, these therapeutic treatments can also reduce the number and
viability of the immature less mitetically active megakaryocyte precursor cells. Thus,
amelioration of the thrombocytopenia by TPO or the peptide. compounds of the present
invention can be hastened by infusing patients post chemotherapy or radiation therapy with
a population of his or her own tells enriched for megakaryocytes and immature precursors
by in vitro culture.
The peptide compounds of the invention can also be administered to warm blooded
animals, including humans, to activate the TPO-R in vivo. Thus, the present invention
encompasses methods for therapeutic treatment of TPO related disorders that comprise
administering a peptide compound of the invention in amounts sufficient to mimic the
effect of TPO on TPO-R. in vivo. For example, the peptide compounds of the invention can
be administered to treat a variety of hematological disorders, including but not limited to
XXX disorders and thrombocytopenia, particularly when associated with bone marrow
transfusions, radiation therapy, and chemotherapy.
In some embodiments of the invention, TPO antagonists are preferably first
administered to patients undergoing chemotherapy or radiation therapy, followed by
administration of the TPO agonists of the invention.
The activity of the peptide compounds of the present invention can be evaluated
either in vitro or in vivo in one of the numerous models described in McDonald. Am. J. of
Pediatric Hematology/Oncology, 14:8-21 (1992), which is incorporated herein by
reference.
27

According to one embodiment, the compositions of the present invention are useful
for treating thrombocytopenia associated with bone marrow trans fusions, radiation therapy,
or chemotherapy. The peptide compounds typically will .fee administered prophylactically
prior to chemotherapy, radiation therapy, or bone marrow transplant or after such
exposure.
Accordingly, the present invention also provides pharmaceutical compositions
comprising, as an active ingredient, at least one of the peptide compounds of the invention
in association with a pharmaceutical carrier or diluent. The peptide compounds of this
invention can be administered by oral, pulmonary, parental (intramuscular, intraperitoncal.
intravenous (IV) or subcutaneous injection), inhalation (via a fine powder formulation),
transdermal. nasal, vaginal, rectal, or sublingual routes of administration and can be
formulated in dosage forms appropriate for each route of administration. See, e.g.,
Bernstein, et al., PCT Patent Publication No. WO 93/25221; Pin. et al., PCT Patent
Publication No, WO 94/1,7784; and Pitt, et al.. European Patent Application 613683. cach
of which is incorporated herein by reference.
Solid dosage forms for oral administration include capsules, tablets, pills, powders;
and granules, In such solid dosage forms, the active peptide compound is admixed with al
least one inert pharmaceutically acceptable carrier such as sucrose, lactose or starch. Such
dosage forms can also comprise, as is normal practice, additional substances other than
inert diluents. e,g,, lubricating agents such as magnesium stearate. In the case of capsules.
tablets, and pills, the dosage forms may also comprise buffering agents. Tablets and pills
can additionally be prepared with enterric coatings.
Liquid dosage forms for ora! administration include pharmateuticaUy acceptable
emulsions. solutions, suspensions, syrups, with the elixirs containing inert diluents
commonly used in the art, such as water. Besides such inert diluents, compositions can also
include adjuvants, such wetting agents, emulsifying and suspending agents, and
sweetening, flavoring, and perfuming agents.
Preparations according to this invention for parental administration include sterile
aqueous or non-aqueous solutions, suspensions, or emulsions. Examples of non-aqueous
28

solvents or vehicles are propylene glycol, polyethylene glycol vegetable oils, such as olive
oil and corn oil, gelatin, and injectable organic esters such as ethyl oleate. Such dosage
forms may also contain adjuvants such as preserving, wetting, emulsifying. atui dispersing
agents. They may be steritized by. for example, filtration though a bacteria retaining filter,
by incorporating sterilizing agents into the compositions, by irradiating the compositions.
or by healing the compositions. They can also be manufactured using sterile water, or
some other sterile injectable medium, immediately before use.
Compositions for rectal or vaginal administration are preferably suppositories
which may contain. in addition to the active substance, excipients such as cocoa butter or a
suppository wax. Compositions for XXX) or sublingual administration are also prepared
with standard excipients well known in the art.
The composition is containing the peptide compounds can be administered for
prophylactic and/or therapeutic treatments. In therapeutic applications, compositions are
adminstered to a patent already suffering from a disease, as described above, in an
amount sufficient to cure or at least partially arrest the symptoms of the disease and its
complications. An amount adequate to accomplish this is defined as "therapeutically
effective dose". Amounts effective for this use will depend on the severity of the disease
and the weight and general state of the patient.
The compositions of the invention can also be micrcencapsitlatcd by, for example,
the method office and Bibi (in Treatise on Controlled Drug Delivery, ed. A. Kydonicus,
Marcel Dekker. New York (1992), pp. 315-339).
In prophylactic applications, compositions containing the peptide compounds of the
invention arc administered to a patient susceptible to or otherwise at risk of a particular
disease. Such an amount is defined to be a "propriylactually effective dose". In this use,
the precise amounts again depend on the patient's state of health and weight.
The quantities of the peptide compound necessary for effective therapy will depend
upon many different factors, including means of administration, target site, physiological
slate of the patient and other meditcants administered. Thus, treatment dosages should be
titrated to optimize safety and efficacy.Typically, dosages used in vitro may provide
29

of the final product .Most reagents, resins, and protected amino acids (free or on the resin)
can be purchased from Mithipore or Applied Biosy sterns Inc,
The XXX group can be used for amino protection during the coupling procedure.
Primary amine protection on amino acids can be achieved with Fmoc and side chain
protection groups such as i-butyl for scrine, lyrosine.glutamic acid, and threomine; trityl
butyloxycarbonyl for tryptophan; N-trityl for histidine and S-trityl for cysteine,
Removal of the peptide compounds from ths resin and simultaneous deprotection
of the side clian functions can be achieved by treatment with reagent K or slight
modifications of it Alternativly. in the synthesis of those peprides, with an amidated
carboxyl terminnus the fully assembled peptide can be cleaved with a mixture of 90%
tritluoroacetit acid. 5% ethanedithiol, and 5% water. initially at 4º C. and gradually
increasing to room temperature. The deprotected peptide compounds can be precipitated
with diethylether. Purification can be by preparative, reverse-phase, high performance
liquid chromatography on a C13 bonded ail its gel column with a gradient of
acetonitrile/water in 0.1% trifluoroacetic acid, THe homogenous peptide compounds can
be characterized by Fast Atom Bombardment mass spectrometry or dectroapray mass
spectrometry end amino acid analysis when applicable;
In a preferred embodiment, the peptide compounds of this invention are dimerized
using standard synthetic procedures known to and used by those of skill in the art.
Following these synthetic schemes, those of skill in. the art can readily prepare dimer
peptide compounds in accordance withthe present invention. In addition, it will be readily
apparent to those of skill in the art. that the dimcric subunits can readily be linked. using
known methodologies and linkers.
EXAMPLE 2
Pegylation of the Peptide Compounds
Pegylation of a peptide compound of the present invention can be carried out by
well known techniques. For example, a peptide compound of the invention can be
dissolved in100 mM bicine pH 8.0 al a concentration of 10 mg/ml added to a 1.25 fold
31

molar excess of powdered PEG2 (commercially available from Shearwater Polymers. Inc.
(Huntsvilte. Ala)) and stirred at room temperature until the reaction is compile. typically
1 -2 hours. The reaction is monitored by reverse phase HPLC using a 40-65% acetonitrile
gradient with a YMC ODS AQ column. When the reaction is complete, the solution is
added to a second 1.25 molar excess of powdered PEG2 and the process is repeated 4
times using a total of 5 moles of PHG2 for each mote of polypeptide. The solution is
diluted 2 fole with PBS to reduce the viscosity and loaded onus a supecdex 2Q0 column
d"HarmacijAk previously equi[ibTatt:d and eluted with FBS. Fratlioiv&fttnii ihe ai^t
exclusion tolurrm can b* analyst! by rcveTse phase HPLC. FTatliotvs toftlainiiig &-PEG-
peplitie compoOTid ^hitb eiuies prior to any mono-PEG'peptide cmopound can be pooled
and stored at 3' C or lyophilized.
Although only preferred ejnbodiments of the invention are specifically described
aiiove, it will be appreciated that modificaTions and variations of the invention are possible
without departing from the. spirit and intended scope of the invention.
32
WE CLAIM:
1. A peptide compound that binds to a thrombopoietin (TPO) receptor, wherein said
compound comprises (H-IEGPTLRQ(2-Nal)LAARX10)2K-NH2, wherein X10 is
selected from the group consisting of sarcosine or β-alanine, and wherein 2-nal is
β -(2-naphthyl)alanine.
2. The peptide compound as claimed in claim 1, wherein said peptide compound is
covalently attached to a hydrophilic polymer.
3. The peptide compound as claimed in claim 2, wherein said hydrophilic polymer
has an average molecular weight of between about :500 to about 40,000 daltons.
4. The peptide compound as claimed in claim 2, wherein said hydrophilic polymer
has an average molecular weight of between about 5,000 to about 20,000 daltons.
5. The peptide compound as claimed in claim 2, wherein said polymer is selected
from the group consisting of polyethylene glycol, polypropylene glycol,
poly lactic acid and polyglycolic acid.
6. The peptide compound as claimed in claim 5, wherein said peptide compound is
covalently attached to polyethylene glycol.
7. The peptide compound as claimed in claim 1, wherein each of the dimeric
subunits of said peptide compound is covalently attached to a hydrophilic
polymer.
8. A pharmaceutical composition comprising a peptide compound as claimed in
claim 1 in combination with a pharmaceutically acceptable carrier.

9. A physiologically active, non-immunogenic water soluble polypeptide
composition comprising a peptide compound of claim 1 coupled with a coupling
agent to at least one polymer having a molecular weight of between about 500 to
about 20,000 daltons selected from the group consisting of polyethylene glycol
and polypropylene glycol, wherein said polymer is unsubstituted or substituted by
alkoxy or alkyl groups, said alkoxy or alkyl groups possessing less than 5 carbon
atoms.
10. The polypeptide composition as claimed in claim 9, wherein said polymer has a
molecular weight of about 750 to about 15,000 daltons.
11. The polypeptide composition as claimed in claim 9, wherein said polymer has a
molecular weight of about 5,000 to about 10,000 daltons.
12. The polypeptide composition as claimed in claim 9, wherein said polymer is
polyethylene glycol.
13. A non-immunogenic water soluble polypeptide composition comprising the
composition as claimed in claim 9 and a phannaceutically acceptable carrier.
14. A peptide compound for activating a thrombopoietin (TPO) receptor in a cell in
vitro comprising (H-IEGPTLRQ(2-Nal)LAARX10)2K-NH2, wherein X10 is
selected from the group consisting of sarcosine or β -alanine, and wherein 2-nal is
β-(2-naphthyl)alanine.
15. The peptide compound as claimed in claim 14 wherein said cells comprise human
megakaryocytes, platelets or CD34+ cells.

16. The peptide compound as claimed in claim 14 wherein said cells comprise TPO-
dependent cells.
17. A peptide compound that binds to thrombopoietin receptor, said peptide
compound having:
(1) a molecular weight of less than about 8000 daltons, and
(2) a binding affinity to thrombopoietin receptor as expressed by an IC50 of no
more than about 100 μM, wherein said peptide compound comprises the
following sequence of amino acids: (H-IEGPTI,RQ(2-NaI)LAARX10)2K-NH2,
wherein X10 is sarcosine or β -alanine, ard wherein 2-nal is β -(2-
naphthyl)alanine.
18. A peptide compound covalently attached to a hydrophilic polymer for activating
a thrombopoietin receptor in a cell in vitro, said peptide compound comprises the
amino acid sequence I E G P T L R Q (2-Nal) L A A R wherein 2-nal is β-(2-
naphthyl)alanine.
l9. The peptide compound as claimed in claim 18 wherein said hydrophilic polymer
bas an average molecular weight of between about 500 to about 40,000 daltons.
20. The peptide compound as claimed in claim 19 wherein said hydrophilic polymer
has an average molecular weight of between about 5,000 to about 20,000 daltons.

29. The peptide compound as claimed in claim 23, wherein said hydrophilic
polymer is covalently attached to polyethylene glycol.
30. The peptide compound as claimed in claim 29. wherein said polyethylene
glycol has an average molecular weight of between about 5,000 to about 20,000
daltons;
31. The peptide compound as claimed in claim 29, wherein the polyethylene glycol
is selected from (he group consisting of monomethoxypolyethylene glycol
(MePEG-OH), monomethoxypolyethylene glycol-succinate (MePEG-S),
monomethoxypolyethylene glycol-succinimidyl succinate (MePEG-S-NHS),
monomethoxypolyethylene glycol-amine (MePBG-NH2),
monomethoxypolyethylene glycol-tresylate (MePEG- TRES), and
monomethoxypolyethylene glycol-imidazolyl-carbonyl (MePEG-IM).
32. A peptide compound that binds to the thrombopoietin receptor having the
following formula:

Wherein (2 Nal) is β-(2 naphthyl)alanine and (Sar) is sarcosine.


33. The peptide compound as claimed in claim 32, said peptide compound is
covalently attached to a hydrophilic polymer.
34. The peptide compound as claimed in claim 32, wherein said hydrophilic
polymer is selected from the group consisting of polyethylene glycol,
polypropylene glycol, polylactic acid and polyglycolic acid.
35. The peptide compound as claimed in claim 33, wherein said hydrophilic
polymer is covalently attached to polyethylene glycol.
36. The peptide compound as claimed in claim 35, wherein said polyethylene
glycol has an average molecular weight of between about 5,000 to about 20,000
daltons.
37. The peptide compound as claimed in claim 35, wherein the polyethylene glycol
is selected from the group consisting of monomethoxypolyethylene glycol
(MePEG-OH), monomethoxypolyethylene glycol-succinate (MePEG-S),
monomethoxypolyethylene glycol-succinimidyl succinate (MePEG-S-NHS),
monomethoxypolyethyleneglycol-amine(MePEG-
NH2),monomethoxypolyethylene glycol-tresylE te (McPEG- TRES), and
monomethoxypolyethylene glycol-imidazolyl-carbonyl (MePEG-IM).
38. The peptide compound as claimed in claim 35, wherein each of the dimeric
subunits of said peptide compound is covalen:ly attached to a hydrophilic
polymer.
39. The peptide compound as claimed in claim 38, wherein said hydrophilic
polymer is selected from the group consisting of polyethylene glycol,
polypropylene glycol, polylactic acid and polyglycolic acid
40. The peptide compound as claimed in claim 39, wherein said peptide compound
is covalently attached to polyethylene glycol.


41. The peptide compound as claimed in claim 40, wherein said polyethylene
glycol has an average molecular weight of between about 5,000 to about 20,000
daltons.
42. The peptide compound as claimed in claim 41, wherein the polyethylene glycol
is selected from the group consisting of monomethoxypolyethylene glycol
(MePEG-OH),monomethoxypolyethylene glycol-succinate (MePEG-S),
monomethoxypolyethylene glycol-succinimidyl succinate (MePEG-S-NHS),
monomethoxypolyethylene glycol-amine (MePEG-NH2),
monomethoxypolyethylene glycol-tresylate (MePEG-TRES), and
monomethoxypolyethylene glycol-imidazolyl-carbonyl (MePEG-IM).

Documents:

00748-kolnp-2006-abstract.pdf

00748-kolnp-2006-claims.pdf

00748-kolnp-2006-description complete.pdf

00748-kolnp-2006-drawings.pdf

00748-kolnp-2006-form 1.pdf

00748-kolnp-2006-form 2.pdf

00748-kolnp-2006-form 3.pdf

00748-kolnp-2006-form 5.pdf

00748-kolnp-2006-international publication.pdf

00748-kolnp-2006-international search report.pdf

00748-kolnp-2006-pct request.pdf

748-KOLNP-2006-(13-06-2012)-CORRESPONDENCE.pdf

748-KOLNP-2006-(13-06-2012)-FORM-1.pdf

748-KOLNP-2006-(13-06-2012)-FORM-5.pdf

748-KOLNP-2006-(13-06-2012)-OTHERS.pdf

748-KOLNP-2006-(20-06-2012)-CORRESPONDENCE.pdf

748-KOLNP-2006-(20-06-2012)-FORM-1.pdf

748-KOLNP-2006-(20-06-2012)-FORM-13.pdf

748-KOLNP-2006-(20-06-2012)-FORM-5.pdf

748-KOLNP-2006-(20-06-2012)-PA.pdf

748-KOLNP-2006-(25-06-2012)-CORRESPONDENCE.pdf

748-KOLNP-2006-(25-06-2012)-OTHERS.pdf

748-KOLNP-2006-(27-07-2012)-CORRESPONDENCE.pdf

748-KOLNP-2006-(27-07-2012)-PA.pdf

748-kolnp-2006-abstract.pdf

748-KOLNP-2006-AMANDED CLAIMS.pdf

748-KOLNP-2006-CORRESPONDENCE-1.1.pdf

748-KOLNP-2006-CORRESPONDENCE.pdf

748-KOLNP-2006-DESCRIPTION (COMPLETE).pdf

748-KOLNP-2006-FORM 1.pdf

748-KOLNP-2006-FORM 13.pdf

748-KOLNP-2006-FORM 2.pdf

748-KOLNP-2006-FORM 3.pdf

748-KOLNP-2006-LATEST ABSTRACT.pdf

748-KOLNP-2006-LATEST AMENDED CLAIMS.pdf

748-KOLNP-2006-OTHERS.pdf

748-KOLNP-2006-PCT PRIORITY DOCUMENT NOTIFICATION.pdf

748-KOLNP-2006-PETITION UNDER RULE 137.pdf

748-KOLNP-2006-REPLY TO EXAMINATION REPORT.pdf

abstract-00748-kolnp-2006.jpg


Patent Number 254506
Indian Patent Application Number 748/KOLNP/2006
PG Journal Number 45/2012
Publication Date 09-Nov-2012
Grant Date 09-Nov-2012
Date of Filing 28-Mar-2006
Name of Patentee ORTHO MCNEIL PHARMACEUTICAL, INC
Applicant Address U.S. ROUTE 202, RARITAN, NJ 08869 U.S.A.
Inventors:
# Inventor's Name Inventor's Address
1 BRIAN R. MACDONALD 19 PAPERMILL ROAD, NEWTOWN SQUATE, PA 19073 (NEW ADDRESS)
2 EDWARD JOHN YURKOW 123 WOODS ROAD, HILLSBOROUGH, NJ 08844
3 JEFFERY KENNETH WEIS 106 SOUTH HONEYMAN ROAD, WHITEHOUSE STATION, NJ 08889
PCT International Classification Number C07K
PCT International Application Number PCT/US2004/026422
PCT International Filing date 2004-08-13
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/498,740 2003-08-28 U.S.A.