Title of Invention

"CYCLOPAMINE ANALOGUES "

Abstract The present invention discloses compositions and methods for modulating smoothened dependent pathway activation. The present invention also discloses analogs of cyclopamine that can be used to counteract the phenotypic effects of unwanted activation of a hedgehog pathway, such as resulting from hedgehog gain-of-function, Ptc loss-of-function or smoothened gain-of-function mutations. The compounds of the present invention are particularly useful in treating cancers.
Full Text

RELATED APPLICATION
[0001] This application is related to the following U.S. applications: Serial
Number 60/605,020 filed August 27,2004, Serial Number 60/617,170 filed October 8, 2004,
Serial Number 60/625,676 filed November 5, 2004, and Serial Number 60/683,169 filed
May 19,2005, each of which is incorporated herein by reference in their entirety.
BACKGROUND OF THE INVENTION
[0002] The hedgehog signaling pathway is essential for numerous processes during
embryonic development. Members of the hedgehog family of secreted proteins control cell
proliferation, differentiation and tissue patterning. The pathway was first deciphered in the fruit
fly Drosophila, but since has been shown to be highly conserved in invertebrates and
vertebrates, including humans. The overall activity of the hedgehog signaling pathway declines
after emtayogenesis in most cells, but the pathway remains active in certain adult cell types. Recently, it has been shown that uncontrolled activation of the hedgehog pathway results in certain types of cancer as detailed below.
[0003] The Hedgehog polypeptide is a secreted protein that functions as a signaling ligand in
the hedgehog pathway. Exemplary hedgehog genes and proteins are described in PCT
publications WO 95/18856 and WO 96/17924. Three different forms of the hedgehog protein
are found in humans; Sonic hedgehog (Shh), Desert hedgehog (Dhh) and Indian hedgehog (Ihh).
Sonic hedgehog is the most prevalent hedgehog member in mammals and also is the best
characterizedligand of the hedgehog family. Prior to secretion, Shh undergoes an intramolecular
cleavage and lipid modification reaction. The lipid modified peptide is responsible for all
signaling activities
[0004] Two transmembrane proteins are involved in signal transduction of in the hedgehog
pathway; the twelve-transmembrane Patched receptor (Ptc) and the seven-transmembrane
Smoothened protein (Smo).
[0005] The findings in the art suggest that Hedgehog acts by binding to Ptc, thereby
releasing an inhibitory effect of Ptc on Smo. Since Ptc and Smo are both transmembrane
proteins, a proposed scenario is that they physically associate to form a receptor complex,

though indirect mechanisms of action are also plausible. The derepression of Smo from Ptc
inhibition most likely involves a conformational change in Smo. Ptc, however, is not essential
for Smo's activity, since Smo becomes constitutively activated in the complete absence of
Patched protein (Alcedo et al, supra; Quirk et al. (1997) Cold Spring Harbor Svmp. Quant.
Biol. 62: 217-226). Once Smo is derepressed it is rapidly and highly phosphorylated and
transduces a signal that activates transcription via the Gli transcription factors (homologue of
Dropophila Ci protein) (Alexandre et al. (1996) Genes Dev. 10: 2003-13)). The Glil
transcription factor up-regulates many genes involved in growth and development (Alexandre et
al., supra). Hedgehog signaling is essential in many stages of development, especially in
formation of left-right symmetry. Loss or reduction of hedgehog signaling leads to multiple
developmental deficits and malformations, one of the most striking of which is cyclopia (Belloni
et al. (1996) Nature Genetics 14: 353-6).
[0006] Recently, it has been reported that activating hedgehog pathway mutations occur in
sporadic basal cell carcinoma (Xie et al. (1998) Nature 391: 90-2) and primitive
neuroectodermal tumors of the central nervous system (Reifenberger et al. (1998) Cancer Res
58: 1798-803). Uncontrolled activation of the hedgehog pathway has also been shown in
numerous cancer types such as GI tract cancers including pancreatic, esophageal, gastric cancer
-(Berman et aI (2003) Nature 425: 846-51, Thayer et al. (2003) Nature 425: 851-56) lung cancer
(Watkins et al (2003) Nature 422: 313-317, prostate cancer (Karhadkar et al (2004) Nature 431:
707-12, Sheng et al. (2004) Molecular Cancer 3: 29-42, Fan et al. (2004) Endocrinology 145:
3961-70), breast cancer (Kubo et al (2004) Cancer Research 64: 6071-74, Lewis et al (2004)
Journal of Mammary Gland Biology and Neoplasia 2: 165-181) and hepatocellular cancer
(Sicklick et al. (2005) ASCO conference, Mohini et al. (2005) AACR conference).
[0007] Small molecule inhibition of hedgehog pathway activity has been shown to result in
cell death in a number of different cancer types having uncontrolled hedgehog pathway
activation (See, for example, Berman et al, 2003 Nature 425: 846-51).
[0008] Hedgehog pathway antagonists are currently being explored in a large number of
clinical conditions where a therapeutic effect can be obtained for a condition or disorder by
inhibiting one or more aspects of Hedgehog pathway activity. Although the primary focus has
been on cancer, investigators have found that small molecule inhibition of the hedgehog
pathway has been shown to ameliorate the symptoms of psoriasis (Tas, et al, 2004 Dermatology
209:126-131, published US patent application 20040072913 (herein incorporated by
reference)). Psoriasis is a very common, chronic skin disorder typically characterized by skin

lesions usually containing erythematous papules and plaques with a silver scale, although there
are variations both on the skin and in other parts of the body. Psoriasis is currently thought to be
an autoimmune disease but its etiology is still poorly understood.
[0009] A hedgehog pathway inhibitor that has attracted considerable interest is the natural
product cyclopamine. Cyclopamine was first isolated from the lily Veratrum califomicum in
1966 after it was found that the offspring of grazing sheep were bom with severe birth
deformities. In an effort to identify the agent(s) responsible for causing these birth deformities,
the FDA investigated possible sources of tetragens and identified the jervine family of steroidal
alkaloids, including the compound cyclopamine, as the tetragens responsible for the birth
deformities.
[0010] Much later, it was found that cyclopamine's mechanism of action was through the
inhibition of hedgehog pathway activity (Cooper et al. (1998) Science 280: 1603-7, Ch.ea.etal,
(2002) Genes and Development 16: 2743-8). Cyclopamine and related compounds have been
shown to have anticancer activities through action on the hedgehog pathway. Despite initial
promise, no members of this family of compounds, or analogues thereof, have been successfully
developed as an anticancer agent. The present invention fulfills this need and has other related
advantages.
SUMMARY OF THE INVENTION
[0011] The present invention provides analogs of steroidal alkaloids of the cyclopamine family that are useful for inhibiting proliferation of cells and/or promoting apoptosis in a cell,
such as in the treatment of proliferative disorders such as cancers. The hedgehog pathway antagonists of the present invention may be used to inhibit proliferation (or other biological consequences) of cells or tissues, such as in a patient, characterized as having a Ptc loss-of-
function phenotype, a Smo gain-of-function phenotype or a Hedgehog gain-of-function
phenotype.
[0012] In certain uses, the present methods are used to counteract the phenotypic effects of
unwanted activation of a Hedgehog pathway, such as resulting from hedgehog gain-of-function,
Ptc loss-of- function or Smo gain-of-function mutations. For instance, the present methods can
involve contacting a cell {in vitro or in vivo) with a hedgehog pathway antagonist of the present
invention (defined below) in an amount sufficient to antagonize Smo-dependent pathway
activation. Such antagonism will stop or slow unwanted cell proliferation and can lead to cell
death.

[0013] In certain embodiments, the methods and compounds of the present invention may be
used to regulate proliferation of cells and/or cell death in vitro and/or in vivo such as in the
treatment of malignant disorders of the head, neck, nasal cavity, paranasal sinuses, nasopharynx,
oral cavity, oropharynx, larynx, hypopharynx, salivary glands, paragangliomas, pancreas,
stomach, skin, esophagus, liver and biliary tree, bone, intestine, colon, rectum, ovaries, prostate,
lung, breast, lymphatic system, blood, bone marrow central nervous system, or brain.
[0014] In certain embodiments, the methods and compounds of the present invention may be
used to treat the symptoms of psoriasis in a subject. The compounds of the present invention
may be used to treat psoriasis as a single agent or in combination with one or more anti-psoriasis
agents. In particular embodiments, the compounds of the present invention are topically
administered to a subject in need thereof.
[0015] The compounds of the present invention may be further formulated as a
pharmaceutical preparation comprising a pharmaceutically acceptable excipient, for
administration to a patient as a means of treating cancer. The hedgehog pathway antagonists of
the present invention and/or preparations comprising them may be administered to a patient to
treat conditions involving unwanted cell proliferation, e. g., cancer and/or tumors of the head,
neck, nasal cavity, paranasal sinuses, nasopharynx, oral cavity, oropharynx, larynx,
hypopharynx, salivary glands, paragangliomas, pancreas, stomach, skin, esophagus, liver and
biliary tree, bone, intestine, colon, rectum, ovaries, prostate, lung, breast, lymphatic system,
blood, bone marrow central nervous system, or brain. In certain embodiments, such compounds
or preparations are administered systemically, e.g. parenterally and/or locally, e. g., topically.
DETAILED DESCRIPTION OF THE INVENTION
Definitions
[0016] The definitions of terms used herein are meant to incorporate the present state-of-the-
art definitions recognized for each term in the chemical and pharmaceutical fields. Where
appropriate, exemplification is provided. The definitions apply to the terms as they are used
throughout this specification, unless otherwise limited in specific instances, either individually
or as part of a larger group.
[0017] The term "heteroatom" is art-recognized and refers to an atom of any element other
than carbon or hydrogen. Illustrative heteroatoms include boron, nitrogen, oxygen, phosphorus,
sulfur and selenium.

[0018] The term "alkyl" is art-recognized, and includes saturated aliphatic groups, including
straight-chain alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic) groups, alkyl
substituted cycloalkyl groups, and cycloalkyl substituted alkyl groups. In certain embodiments, a
straight chain or branched chain alkyl has about 30 or fewer carbon atoms in its backbone (e.g.,
C-1-C30 for straight chain, C3-C30 for branched chain), and alternatively, about 20 or fewer.
Likewise, cycloalkyls have from about 3 to about 10 carbon atoms in their ring structure, and
alternatively about 5, 6 or 7 carbons in the ring structure. Alkyl groups, unless otherwise
specified, may optionally be substituted with suitable substituents. The number of substituents
is typically limited by the number of available valences on the alkyl group; thus an alkyl group
may be substituted by replacement of one or more of the hydrogen atoms that would be present
on the unsubstituted group, suitable substituents for alkyl groups include halo, =0, =N-CN, =N-
OR\ =NR\ OR', NR'2, SR', S02R', S02NR'2, NR'S02R', NR'CONR'2) NR'COOR',
NR'COR', CN, COOR', CONR'2, OOCR', COR', and N02, wherein each R' is independently
H, C1-C6 alkyl, C2-C6 heteroalkyl, C1-C6 acyl, C2-C6 heteroacyl, C6-C10 aryl, C5-C10 heteroaryl,
C7-C12 arylalkyl, or C6-C12 heteroarylalkyl, each of which is optionally substituted with one or
more groups selected from halo, C1-C4 alkyl, C1-C4 heteroalkyl, Q-C6 acyl, C1-C6 heteroacyl,
hydroxy, amino, and =0; and wherein two R' on the same substituent or on adjacent atoms can
be linked to form a 3-7 membered ring optionally containing up to three heteroatoms selected
from N, O and S;
[0019] Unless the number of carbons is otherwise specified, "lower alkyl" refers to an alkyl
group, as defined above, but having from one to about ten carbons, alternatively from one to
about six carbon atoms in its backbone structure. Likewise, "lower alkenyl" and "lower
alkynyl" have similar chain lengths.
[0020] The term "aralkyl" is art-recognized and refers to an alkyl group substituted with an
aryl group (e.g., an aromatic or heteroaromatic group).
[0021] The terms "alkenyl" and "alkynyl" are art-recognized and refer to unsaturated
aliphatic groups analogous in length and possible substitution to the alkyls described above, but
that contain at least one double or triple bond respectively and may contain a mixture of both
double and triple bonds. Alkenyl and alkynyl groups are also optionally substituted unless
otherwise specified, by the same substituents described above for alkyl groups.
[0022] "Heteroalkyl", "heteroalkenyl", and "heteroalkynyl" and the like are defined
similarly to the corresponding hydrocarbyl (alkyl, alkenyl and alkynyl) groups, but the 'hetero'
terms refer to groups that contain 1-3 O, S or N heteroatoms or combinations thereof within the

backbone residue; thus at least one carbon atom of a corresponding alkyl, alkenyl, or alkynyl
grouy ,s replaced by one of the specified heteroatoms to form a heteroalkyl, hetero alkenyl, or
heteroalkynyl group. The typical and preferred sizes for heteroforms of alkyl, alkenyl and
alkynyl groups are generally the same as for the corresponding hydrocarbyl groups, and the
substituents that may be present on the heteroforms are the same as those described above for
the hydrocarbyl groups. For reasons of chemical stability, it is also understood that, unless
otherwise specified, such groups do not include more than two contiguous heteroatoms except
where an oxo group is present on N or S as hi a sulfonyl group.
[0023] The term "aryl" is art-recognized and refers to 5-, 6- and 7-membered single-ring
aromatic groups that may include from zero to four heteroatoms, for example, benzene,
naphthalene, anthracene, pyrene, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, triazole,
pyrazole, pyridine, pyrazine, pyridazine and pyrimidine, and the like. Those aryl groups having
heteroatoms in the ring structure may also be referred to as "aryl heterocycles" or
"heteroaromatics." The aromatic ring may be substituted at one or more ring positions with
such substituents as described above, for example, halogen, azide, alkyl, aralkyl, alkenyl,
alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate,
phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, sulfonamido, ketone, aldehyde,
ester, heterocyclyl, aromatic or heteroaromatic moieties, -CF3, -CN, or the like. The term "aryl"
also includes polycyclic ring systems having two or more cyclic rings in which two or more
carbons are common to two adjoining rings (the rings are "fused rings") wherein at least one of
the rings is aromatic, e.g., the other cyclic rings maybe cycloalkyls, cycloalkenyls,
cycloalkynyls, aryls and/or heterocyclyls.
[0024] The terms ortho, meta and para are art-recognized and refer to 1,2-, 1,3- and 1,4-
disubstituted benzenes, respectively. For example, the names 1,2-dimethylbenzene and ortho-
dimethylbenzene are synonymous.
[0025] The terms "heterocyclyl", "heteroaryl", or "heterocyclic group" are art-recognized
and refer to 3- to about 10-membered ring structures, alternatively 3- to about 7-membered
rings, whose ring structures include one to four heteroatoms. Heterocycles may also be
polycycles. Heterocyclyl groups include, for example, thiophene, thianthrene, furan, pyran,
isobenzofuran, chromene, xanthene, phenoxanthene, pyrrole, imidazole, pyrazole, isothiazole,
isoxazole, pyridine, pyrazine, pyrimidine, pyridazine, indolizine, isoindole, indole, indazole,
purine, quinolizine, isoquinoline, quinoline, phthalazine, naphthyridine, quinoxaline,
quinazoline, cinnoline, pteridine, carbazole, carboline, phenanthridine, acridine, pyrimidine,

phenanthroline, phenazine, phenarsazine, phenothiazine, furazan, phenoxazine, pyrrolidine,
oxolane, thiolane, oxazole, piperidine, piperazine, morpholine, lactones, lactams such as
azetidinones and pyrrolidinones, sultams, sultones, and the like. The heterocyclic ring may be
substituted at one or more positions with such substituents as described above, as for example,
halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino,
amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone,
aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, -CF3, -CN, or the like.
[0026] The terms "polycyclyl" or "polycyclic group" are art-recognized and refer to two or
more rings (e.g., cycloalkyls, cycloalkenyls, cycloalkynyls, aryls and/or heterocyclyls) in which
two or more carbons are common to two adjoining rings, e.g., the rings are "fused rings". Rings
that are joined through non-adjacent atoms are termed "bridged" rings. Each of the rings of the
polycycle may be substituted with such substituents as described above, as for example,
halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino,
amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone,
aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, -CF3, -CN, or the like.
[0027] The term "carbocycle" is art-recognized and refers to an aromatic or non-aromatic
ring in which each atom of the ring is carbon.
[0028] The term "nitro" is art-recognized and refers to -NO2; the term "halogen" is art-
recognized and refers to -F, -CI, -Br or -I; the term "sulfhydryl" is art-recognized and refers to -
SH; the term "hydroxyl" means -OH; and the term "sulfonyl" is art-recognized and refers to -
SO2". "Halide" designates the corresponding anion of the halogens, and "pseudohalide" has the
definition set forth on 560 of "Advanced Inorganic Chemistry" by Cotton and Wilkinson.
[0029] The terms "amine", "amino" and "ammonium" are art-recognized and refer to both
unsubstituted and substituted amines, e.g., a moiety that may be represented by the general
formulas:

wherein R50, R51 and R52 each independently represent a hydrogen, an alkyl, an alkenyl, -
(CH2)m-R61, or R50 and R51, taken together with the N atom to which they are attached
complete a heterocycle having from 4 to 8 atoms in the ring structure; R61 represents an aryl, a

cycloalkyl, a cycloalkenyl, a heterocycle or a polycycle; and m is zero or an integer in the range
of 1 to 8. In other embodiments, R50 and R51 (and optionally R52) each independently
represent a hydrogen, an alkyl, an alkenyl, or -(CH2)m-R61. Thus, the term "alkylamine"
includes an amine group, as defined above, having a substituted or unsubstituted alkyl attached
thereto, i.e., at least one of R50 and R51 is an alkyl group.
[0030] The term "acylamino" is art-recognized and refers to a moiety that may be
represented by the general formula:

wherein R50 is as defined above, and R54 represents a hydrogen, an alkyl, an alkenyl or -
(CH2)m-R61, where m and R61 are as defined above.
[0031] The term "amido" is art recognized as an amino-substituted carbonyl and includes a
moiety that may be represented by the general formula:

wherein R50 and R51 are as defined above. Certain embodiments of the amide in the present
invention will not include imides which may be unstable.
[0032] The term "alkylthio" refers to an alkyl group, as defined above, having a sulfur
radical attached thereto. In certain embodiments, the "alkylthio" moiety is represented by one of
-S-alkyl, -S-alkenyl, -S-alkynyl, and -S-(CH2)m-R61, wherein m and R61 are defined above.
Representative alkylthio groups include methylthio, ethyl thio, and the like.
[0033] The term "carboxyl" is ait recognized and includes such moieties as may be
represented by the general formulas:


wherein X50 is a bond or represents an oxygen or a sulfur, and R55 and R56 represents a
hydrogen, an alkyl, an alkenyl, -(CH2)m-R61or a pharmaceutically acceptable salt, R56
represents a hydrogen, an alkyl, an alkenyl or -(CH2)m-R61, where m and R61 are defined
above. Where X50 is an oxygen and R55 or R56 is not hydrogen, the formula represents an
"ester". Where X50 is an oxygen, and R55 is as defined above, the moiety is referred to herein
as a carboxyl group, and particularly when R55 is a hydrogen, the formula represents a
"carboxylic acid". Where X50 is an oxygen, and R56 is hydrogen, the formula represents a
"formate", hi general, where the oxygen atom of the above formula is replaced by sulfur, the
formula represents a "thiolcarbonyl" group. Where X50 is a sulfur and R55 or R56 is not
hydrogen, the formula represents a "thiolester." Where X50 is a sulfur and R55 is hydrogen, the
formula represents a "thiolcarboxylic acid." Where X50 is a sulfur and R56 is hydrogen, the
formula represents a "thiolformate." On the other hand, where X50 is a bond, and R55 is not
hydrogen, the above formula represents a "ketone" group. Where X50 is a bond, and R55 is
hydrogen, the above formula represents an "aldehyde" group.
[0034] The term "carbamoyl" refers to -0(C=0)NRR', where R and R' are independently H,
aliphatic groups, aryl groups or heteroaryl groups.
[0035] The term "oxo" refers to a carbonyl oxygen (=0).
[0036] The terms "alkoxyl" or "alkoxy" are art-recognized and refer to an alkyl group, as
defined above, having an oxygen radical attached thereto. Representative alkoxyl groups include
methoxy, ethoxy, propyloxy, tert-butoxy and the like. An "ether" is two hydrocarbons
covalently linked by an oxygen. Accordingly, the substituent of an alkyl mat renders that alkyl
an ether is or resembles an alkoxyl, such as-may be represented by one of -O-alkyl, -O-alkenyl, -
O-alkynyl, -0--(CH2)m-R61, where m andR61 are described above.
[0037] The term "sulfonate" is art recognized and refers to a moiety that may be represented
by the general formula:

in which R57 is an electron pair, hydrogen, alkyl, cycloalkyl, or aryl.
[0038] The term "sulfate" is art recognized and includes a moiety that may be represented by
the general formula:


in which R57 is as defined above.
[0039] The term "sulfonamide*" is art recognized and includes a moiety that may be
represented by the general formula:

in which R50 and R56 are as defined above.
[0040] The term "sulfamoyl" is art-recognized and refers to a moiety that may be
represented by the general formula:

in which R50 and R51 are as defined above.
[0041] The term "sulfonyl" is art-recognized and refers to a moiety that may be represented
by. the general formula:

in which. R58 is one of the following: hydrogen, alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl,
aryl or heteroaryl.
[0042] The term "sulfoxido" is art-recognized and refers to a moiety that may be represented
by the general formula:


in which R58 is defined above.
[0043] The term "phosphoryl" is art-recognized and may in general be represented by the
formula:

wherein Q50 represents S or O, and R59 represents hydrogen, a lower alkyl or an aryl. When
used to substitute, e.g., an alkyl, the phosphoryl group of the phosphoryl alkyl may be
represented by the general formulas:

wherein Q50 and R59, each independently, are defined above, and Q51 represents O, S or N.
When Q50 is S, the phosphoryl moiety is a "phosphorothioate".
[0044] The term "phosphoramidite" is art-recognized and may be represented in the general
formulas:

wherein Q51, R50, R51 and R59 are as defined above.
[0045] The term "phosphonamidite" is art-recognized and may be represented in the general
formulas:


wherein Q51, R50, R51 and R59 are as defined above, and R60 represents a lower alkyl or an
aryl.
[0046] Analogous substitutions may be made to alkenyl and alkynyl groups to produce, for
example, aminoalkenyls, aminoalkynyls, amidoalkenyls, amidoalkynyls, iminoalkenyls,
iminoalkynyls, thioalkenyls, thioalkynyls, carbonyl-substituted alkenyls or alkynyls.
[0047] The definition of each expression, e.g. alkyl, m, n, and the like, when it occurs more
than once in any structure, is intended to be independent of its definition elsewhere in the same
structure.
[0048] The term "selenoalkyl" is art-recognized and refers to an alkyl group having a
substituted seleno group attached thereto. Exemplary "selenoethers" which may be substituted
on the alkyl are selected from one of -Se-alkyl, -Se-alkenyl, -Se-alkynyl, and -Se-(CH2)m-R61,
m and R61 being defined above.
[0049] The terms trifiyl, tosyl, mesyl, and nonaflyl are art-recognized and refer to
trifluoromethanesulfonyl, j?-toluenesulfonyl, methanesulfonyl, and nonafluorobutanesulfonyl
groups, respectively. The terms triflate, tosylate, mesylate, and nonaflate are art-recognized and
refer to trifluoromethanesulfonate ester, p-toluenesulfonate ester, methanesulfonate ester, and
nonafluorobutanesulfonate ester functional groups and molecules that contain said groups,
respectively.
[0050] The abbreviations Me, Et, Ph, Tf, Nf, Ts, and Ms represent methyl, ethyl, phenyl,
trifluoromethanesulfonyl, nonafluorobutanesulfonyl, p-toluenesulfonyl and methanesulfonyl,
respectively. A more comprehensive list of the abbreviations utilized by organic chemists of
ordinary skill in the art appears in the first issue of each volume of the Journal of Organic
Chemistry; this list is typically presented in a table entitled Standard List of Abbreviations.
[0051] Certain compounds contained in compositions of the present invention may exist in
particular geometric or stereoisomeric forms. The present invention contemplates all such
compounds, including cis- and trans-isomers, R- and 5-enantiomers, diastereomers, (D)-isomers,
(L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope

of the invention. Additional asymmetric carbon atoms may be present in a substituent such as
an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this
invention.
[0052] If, for instance, a particular enantiomer of compound of the present invention is
desired, it may be prepared by asymmetric synthesis, or by derivation with a chiral auxiliary,
where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to
provide the pure desired enantiomers. Alternatively, where the molecule contains a basic
functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric
salts are formed with an appropriate optically-active acid or base, followed by resolution of the
diastereomers thus formed by fractional crystallization or chromatographic means well known in
the art, and subsequent recovery of the pure enantiomers. Similarly, a particular enantiomer in a
racemic mixture can be separated from it's enantiomer via chiral chromatographic methods
known in the art.
[0053] It will be understood that "substitution" or "substituted with" includes the implicit
proviso that such substitution is in accordance with permitted valence of the substituted atom
and the substituent, and that the substitution results in a stable compound, e.g., which does not
spontaneously undergo transformation such as by rearrangement, cyclization, elimination, or
other reaction.
[0054] The term "substituted" is also contemplated to include all permissible substituents of
organic compounds. In a broad aspect, the permissible substituents include acyclic and cyclic,
branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents
of organic compounds. Illustrative substituents include, for example, those described herein
above. The permissible substituents may be one or more and the same or different for
appropriate organic compounds. For purposes of this invention, the heteroatoms such as
nitrogen may haveJiydrogen substituents and/or any permissible substituents of organic
compounds described herein which satisfy the valences of the heteroatoms. This invention is
not intended to be limited in any.manner by the permissible substituents of organic compounds.
[0055] The phrase "protecting group" as used herein means temporary substituents which
protect a potentially reactive functional group from undesired chemical transformations.
Examples of such protecting groups include esters of carboxylic acids, silyl ethers of alcohols,
and acetals and ketals of aldehydes and ketones, respectively. The field of protecting group
chemistry has been reviewed (Greene, T.W.; Wuts, P.G.M. Protective Groups in Organic

Synthesis, 2nd e included within the scope of this invention.
[0056] For purposes of this invention, the chemical elements are identified in accordance
with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics,
67th Ed., 1986-87, inside cover.
[0057] The phrase "aberrant modification or mutation" of a gene refers to such genetic
lesions as, for example, deletions, substitution or addition of nucleotides to a gene, as well as
gross chromosomal rearrangements of the gene and/or abnormal methylation of the gene.
Likewise, mis-expression of a gene refers to aberrant levels of transcription of the gene relative
to those levels in a normal cell under similar conditions, as well as nonwild-type splicing of
mRNA transcribed from the gene.
[0058] "Basal cell carcinomas" exist in a variety of clinical and histological forms such as
nodular-ulcerative, superficial, pigmented, morphealike, fibroepithelioma and nevoid syndrome.
Basal cell carcinomas are the most common cutaneous neoplasms found in humans. The
majority of new cases of non-melanoma skin cancers fall into this category.
[0059] The term "carcinoma" refers to a malignant new growth made up of epithelial cells
tending to infiltrate surrounding tissues and to give rise to metastases. Exemplary carcinomas
include: "basal cell carcinoma", which is an epithelial tumor of the skin that, while seldom
metastasizing, has potential for local invasion and destruction; "squamous cell carcinoma",
which refers to carcinomas arising from squamous epithelium and having cuboid cells;
"carcinosarcoma", which include malignant tumors composed of carcinomatous and
sarcomatous tissues; "adenocystic carcinoma", carcinoma marked by cylinders or bands of
hyaline or mucinous stroma separated or surrounded by nests or cords of small epithelial cells,
occurring in the mammary and salivary glands, and mucous glands of the respiratory tract;
"epidermoid carcinoma", which refers to cancerous cells which tend to differentiate in the same
way as those of the epidermis; i.e., they tend to form prickle cells and undergo cornification;
"nasopharyngeal carcinoma", which refers to a malignant tumor arising in the epithelial lining of
the space behind the nose; and "renal cell carcinoma", which pertains to carcinoma of the renal
parenchyma composed of tubular cells in varying arrangements.
[0060] Other carcinomatous epithelial growths are "papillomas", which refers to benign
tumors derived from epithelium and having a papillomavirus as a causative agent; and
"epidermoidomas", which refers to a cerebral or meningeal tumor formed by inclusion
ofectodemial elements at the time of closure of the neural groove.

[0061] The term "ED50" means the dose of a drag which produces 50% of its maximum
response or effect.
[0062] An "effective amount" of a subject compound, with respect to the present methods of
treatment, refers to an amount of the antagonist in a preparation which, when applied as part of a
desired dosage regimen brings about, e. g., a change in the rate of cell proliferation and/or rate of
survival of a cell according to clinically acceptable standards for the disorder to be treated.
[0063] The terms "epithelia", "epithelial" and "epithelium" refer to the cellular covering of
internal and external body surfaces (cutaneous, mucous and serous), including the glands and
other structures derived therefrom, e. g., corneal, esophogeal, epidermal, and hair follicle
epithelial cells. Other exemplary epithlelial tissue includes: olfactory epithelium, which is the
pseudostratified epithelium lining the olfactory region of the nasal cavity, and containing the
receptors for the sense of smell; glandular epithelium, which refers to epithelium composed of
secreting cells; squamous epithelium, which refers to epithelium composed of flattened plate-
like cells. The term epithelium can also refer to transitional epithelium, like that which is
characteristically found lining hollow organs that are subject to great mechanical change due to
contraction and distention, e. g., tissue which represents a transition between stratified squamous
and columnar epithelium.
[0064] The "growth state" of a cell refers to the rate of proliferation of the cell and/or the
state of differentiation of the cell. An "altered growth state" is a growth state characterized by an
abnormal rate of proliferation, e. g., a cell exhibiting an increased or decreased rate of
proliferation relative to a normal cell.
[0065] The term "hedgehog pathway antagonist" refers to an agent that inhibits the function/
of the hedgehog pathway, e.g. represses transcription of target genes (GUI and Ptc genes), which
in normal cells are induced by contact of the cell with hedgehog. In addition to altering a
smoothened dependent pathway, in certain embodiments the hedgehog pathway antagonists of
the current invention can be used to overcome a Ptc loss-of-function, smoothened gain-of-
function, and/or a hedgehog gain-of-function. The terms "loss-of-function" and "gain-of-
function", as appropriate, refer to an aberrant modification or mutation of, e. g., a Ptc gene,
hedgehog gene, or smoothened gene, or a decrease or increase in the level of expression of such
a gene, which results in a phenotype, e. g., which resembles contacting a cell with a hedgehog
protein, such as aberrant activation of a hedgehog pathway or resemble loss of Smo function.
The mutation may include a loss of the ability of the Ptc or Smo gene product (s) to regulate the
level of activity of Gli/O proteins, e. g., Glil, GK2, and Gli3.

[0066] As used herein, "immortalized cells" refers to cells which have been altered via
chemical and/or recombinant means such that the cells have the ability to grow through an
indefinite number of divisions in culture.
[0067] The term "LD50" means the dose of a drug which is lethal in 50% of test subjects.
[0068] A "patient" or "subject" to be treated by the present method can mean either a human
or non-human animal.
[0069] The phrase "pharmaceutically acceptable" is employed herein to refer to those
compounds, materials, compositions, and/or dosage forms which are, within the scope of sound
medical judgment, suitable for use in contact with the tissues of human beings and animals
without excessive toxicity, irritation, allergic response, or other problem or complication,
commensurate with a reasonable benefit/risk ratio.
[0070] The phrase "pharmaceutically-acceptable carrier" as used herein means a
pharmaceutically-acceptable material, composition or vehicle, such as a liquid or solid filler,
diluent, excipient, manufacturing aid (e.g., lubricant, talc magnesium, calcium or zinc stearate,
or steric acid), or solvent encapsulating material, involved in carrying or transporting the subject
compound from one organ, or portion of the body, to another organ, or portion of the body.
Each carrier must be "acceptable" in the sense of being compatible with the other ingredients of
the formulation and not injurious to the patient. Some examples of materials which can serve as
pharmaceutically-acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose;
(2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as
sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; (4) powdered tragacanth;
(5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9)
oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean
oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and
polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering
agents, such as magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16) pyrogen-
free water; (17) isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) pH buffered
solutions; (21) polyesters, polycarbonates and/or polyanhydrides; and (22) other non-toxic
compatible substances employed in pharmaceutical formulations. ^
[0071] The term "prodrug" is intended to encompass compounds which, under physiological /
conditions, are converted into the therapeutically active agents of the present invention. A
common method for making a prodrug is to include selected moieties which are hydrdlyzed
under physiological conditions to reveal the desired molecule, hi other embodiments, the

prodrug is converted by an enzymatic activity (or other physiological activity) of the host V
animal.
[0072] As used herein, "proliferating" and "proliferation" refer to cells undergoing mitosis.
[0073] Throughout this application, the term "proliferative skin disorder" refers to any
disease/disorder of the skin marked by unwanted or aberrant proliferation of cutaneous tissue.
These conditions are typically characterized by epidermal cell proliferation or incomplete cell
differentiation, and include, for example, X-linked ichthyosis, psoriasis, atopic dermatitis,
allergic contact dermatitis, epidermolytic hyperkeratosis, and seborrheic dermatitis. For
example, epidermodysplasia is a form of faulty development of the epidermis. Another example
is "epidermolysis", which refers to a loosened state of the epidermis with formation of blebs and
bullae either spontaneously or at the site of trauma.
[0074] The term "therapeuticjndex^^fers to the therapeutic index of a drug defined as
LD50/ED50.
[0075] The term "transformed cells^refers to cells which have spontaneously converted to a
state of unrestrained growth, i.e., they have acquired the ability to grow through an indefinite
number of divisions in culture. Transformed cells maybe characterized by such terms as
neoplastic, anaplastic and/or hyperplastic, with respect to their loss of growth control.
[0076] The term "subject" as used herein, refers to an animal, typically a mammal or a
human, that has been the object of treatment, observation, and/or experiment. When the term is
used in conjunction with administration of a compound or drug, then the subject has been the
object of treatment, observation, and/or administration of the compound or drug. The phrase
"therapeutically-effective amount" as used herein means that amount of a compound, material,
or composition comprising a compound of the present invention which is effective for producing
some desired therapeutic effect in at least a sub-population of cells in an animal at a reasonable
benefit/risk ratio applicable to any medical treatment.
[0077] The phrases "parenteral administration" and "administered parenterally" as used
herein means modes of administration other than enteral and topical administration, usually by
injection, and includes, without limitation, intravenous, intramuscular, intraarterial, intrathecal,
intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous,
subcuticular, intraarticulare, subcapsular, subarachnoid, intraspinal and intrasternal injection and
infusion.
[0078] The phrases "systemic administration," "administered systemically," "peripheral
administration" and "administered peripherally" as used herein mean the administration of a

compound, drug or other material other than directly to the site of hedgehog pathway mediated
disorder, such that it enters the patient's system and, thus, is subject to metabolism and other like
processes, for example, subcutaneous administration.
[0079] The term 'sugar' as used herein refers to a natural or an unnatural monosaccharide,
disaccharide or oligosaccharide comprising one or more pyranose or furanose rings. The sugar
may be covalently bonded to the steroidal alkaloid of the present invention through an ether
linkage or through an alkyl linkage. In certain embodiments the saccharide moiety may be
covalently bonded to a steroidal alkaloid of die present invention at an anomeric center of a
saccharide ring.
[0080] The term "diradical" as used herein refers to any of a series of divalent groups from
alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl, and heteroaralkyl
groups. For example. is an alkyl diradical; is also an alkyl diradical;
is an aralkyl diradical; and is an (alkyl)heteroaralkyl
diradical. Typical examples include alkylenes of general structure (CH2)X where X is 1-6, and
corresponding alkenylene and alkynylene linkers having 2-6 carbon atoms and one or more
double or triple bonds; cycloalkylene groups having 3-8 ring members; and aralkyl groups
wherein one open valence is on the aryl ring and one is on the alkyl portion such as
and its isomers.
Compounds of the Invention ~
^^^mM»«, --!■ -I "—I ^
[0081] The present invention provides analogs of cyclopamineias weJJLas isolated and |
r**purified forms thereof/including synthetic and semisynthetic analogs, as well as pharmaceutical V
^Soin^ollriHiscontaining such analogs. In one embodiment, the present invention provides
compounds represented by a compound of Formula 1: *


or a pharmaceutically acceptable salt thereof;
wherein each R1 and R8 is independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloalkyl, aralkyl, heteroaryl, heteroaralkyl, halide, sulfhydryl, alkylthio, arylthio,
aralkylthio, hydroxyl, alkoxyl, aryloxy, acyloxy, amino, alkylamino, arylamino, acylamino,
aralkylamino, nitro, acylthio, carboxamide, sulfonamide, carboxyl, nitrile, sulfate,
-OP(L)(OR20)2, -X-C(L)-R21 or -X-C(L)-X-R21;
wherein R1 may also be a sugar;
X is O or NR wherein R is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl or aralkyl;
L is O or S;
R2 and R9 are independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloalkyl, aralkyl, alkoxyl, aryloxy, acyloxy, halide, sulfhydryl, alkylthio, arylthio,
aralkylthio, hydroxyl, amino, alkylamino, arylamino, ac}4arnino, aralkylamino, heteroaryl, or
heteroaralkyl;
each R5 and R1' is independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloalkyl, aralkyl, alkoxyl, aryloxy, acyloxy, halide, hydroxyl, amino, alkylamino,
arylamino, acylamino, aralkylamino, alkylseleno, aralkylseleno, arylseleno, alkylthio,
aralkylthio, arylthio, heteroaryl, or heteroaralkyl;
each R3, R4, R6, R7, R13 and R14 is independently H, alkyl, alkenyl, alkynyl, aryl,
cycloalkyl, heterocycloalkyl, aralkyl, alkoxyl, aryloxy, acyloxy, halide, hydroxyl, amino,
alkylamino, arylamino, acylamino, aralkylamino, heteroaryl, or heteroaralkyl;
or R and R" and/or R and R taken together, along with the carbon to which they are
bonded, form -(00>, -(OS)-, -(ON(OR20))-, -(ON(R20))-, -(C=N(N(R20)(R20))), or form an
optionally substituted 3-8 membered ring; or
R4 and R5 taken together and/or R5 and R6 taken together and/or R10 and R11 taken
together form a double bond or form a group represented by lb


wherein Z is NR21, O, or C(R23)(R23);
R12 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, hydroxyl, aralkyl,
heteroaryl, heteroaralkyl, haloalkyl, alkoxyl, -C(0)R21, -C02R21, -S02R21, -C(0)N(R21)(R21),
-[C(R21)2]q-R21, -[(W)-N(R21)C(0)]qR21, -[(W)-C(0)]qR21, -.[(W)-C(0)0]qR2-[(W)-OC(0)]qR21, -[(W)-S02]qR21, -[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R21)]qR21,
-[(W)-0]qR21, -[(W)-N(R21)]qR21, or -[(W)-S]qR21;
wherein W is a diradical, and q is 1, 2, 3,4, 5, or 6;
R1S, R16, and R17 are independently H, alkoxyl, aryloxy, acyloxy, halide, hydroxyl,
amino, alkylamino, arylamino, acylamino, aralkylamino; or RlD and R16 taken together, along
with the carbon to which they are bonded, form -C(0)- or -C(S)-;
R18 and R19 are independently H, alkyl, aralkyl, halide, amido, or ester;
R20 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl, or
90
heteroaralkyl; or any two occurrences of R on the same substituent can be taken together to
form a 4-8 membered optionally substituted ring;
R21 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl,
9n o^ 9i
heteroaralkyl or -[C(R )2] P-R wherein p is 0-6; or any two occurrences of R on the same
substituent can be taken together to form a 4-8 membered optionally substituted ring;
R23 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl,
heteroaralkyl, halide, alkoxyl, aryloxy, acyloxy, silyloxy, nitrile, -C(0)R21, -C02R21, -S02R21,
and -C(0)N(R21)2;
R2S is hydroxyl, acylamino, -N(R20)COR20, -N(R20)C(O)OR20, -N(R20)SO2(R20),
-COR20N(R20)2, -OC(O)R20N(R20)(R20), -SO2N(R20)(R20), -N(R20)(R20), -COOR20,
-C(0)N(OH)(R21), -OS(0)2OR20, -S(0)2OR2°, -OP(L)(OR20)(OR20), -NP(O)(OR20)(OR20), or
-P(O)(OR20)(OR20).
[0082] hi certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R13, R14, Rls, R16, and Rn are hydrogen.
[0083] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R1 is hydroxyl, sugar, -OP(L)(OR20)2, -X-C(L)-R21, or
-X-C(L)-X-R2i; or R1 and R2 taken together, along with the carbon to which they are bonded,
form -C(O)-.

[0084] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R4 and R5 taken together form a double bond.
[0085] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R1 and R2 taken together, along with the carbon to which
they are bonded, form -C(0)-.
[0086] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R is hydroxyl and R is H.
[0087] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R is hydroxyl, R is H; and R and R taken together form
a double bond; or R5 and R6 taken together form a group represented by lb;

wherein:
Z is C(R23)(R23).
[0088] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R10 and Rn taken together form a double bond; or R10 and
R1' taken together form a group represented by lb;

wherein:
Z is C(R23)(R23).
[0089] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R5 and R6 taken together form a double bond and R10 and
R1' taken together form a double bond.
[0090] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R1 and R2 taken together, along with the carbon to which
they are bonded, form -C(O)-; R4 and R5 taken together form a double bond; and R10 and Rn
taken together form a double bond; or R10 and R11 taken together form a group represented by
lb;


wherein:
Z is C(R23)(R23).
[0091] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R1 is hydroxyl and R2 is H; R10 and R11 taken together
form a double bond; or R30 and R11 taken together form a group represented by lb;

wherein:
Z is C(R23)(R23).
[0092] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein Rs and R9 are hydrogen; or R8 and R9 taken together,
along with the carbon to which they are bonded, is -C(O)-.
[0093] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R12 is H, alkyl, cycloalkyl, aralkyl, heteroaryl,
heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R21)C(0)]qR21, -[(W)-N(R21)S02]qR21,
-[(W)-C(0)N(R21)]qR21, -[(W)-0]qR21, -[(W)-C(0)]qR21, or -[(W)-C(0)0]qR21.
[0094] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R13, R14, R15, R16, and R17 are hydrogen; and R12 is H,
alkyl, cycloalkyl, aralkyl, heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl,
-[(W)-N(R21)C(0)]qR21, -[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R21)]qR21, -[(W)-0]qR21,
-[(W)-C(0)]qR21, or -[(W)-C(0)0]qR21.
[0095] hi certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R4 and R5 taken together form a double bond; R1 and R2
taken together, along with the carbon to which they are bonded, form -C(O)-; and R12 is H,
alkyl, cycloalkyl, aralkyl, heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl,
-[(W)-N(R21)C(0)]qR21, -[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R21)]qR21, -[(W)-0]qR21,
-[(W)-C(0)]qR21, or -[(W)-C(0)0]qR21.
[0096] In certain embodiments, the compounds of the present invention are represented by 1
and the attendant definitions, wherein R1 is hydroxyl and R2 is H; and R12 is H, alkyl, cycloalkyl,
aralkyl, heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R21)C(0)]qR21,
-[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R21)]qR21, -[(W)-0]qR21, -[(W)-C(0)]qR21, or
-[(W)-C(0)0]qR2i.

[0097] In certain embodiments, the compounds of the present invention are represented by a •
compound of the formula:

wherein:
R12 is H, alkyl, aryl, cycloalkyl, heterocycloalkyl, hydroxy!, aralkyl, heteroaryl, .
heteroaralkyl, haloalkyl, alkoxyl, -C(0)R21, -C02R21, -S02R21, -C(0)N(R2I)(R21),
-[C(R21)2]P-R21, -[(W)-N(R2I)C(0)]qR21, -[(W)-C(0)]qR21, -[(W)-C(0)0]qR21,
-[(W)-OC(0)]qR21, -[(W)-S02]qR21, -[(W)-N(R2!)S02]qR21, ~[(W)-C(0)N(R21)]qR21,
-[(W)-0]aR^
wherein each W is independently a diradical: I
R20 is H, alkyi, alkenyl, aikynyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl, or
heteroaralkyl; or any two occurrences of R20 can be taken together to form a 4-8 membered
optionally substimtea^nrigy' " '" ' ~" ~—
R21 isT H7alkyl, aryl, cycloalkyl, heterocycloalkyl^ aralkyl, heteroaryl, heteroaralkyl or ..._.
-[C(R20)2]P-R2S; or any two occurrences of R21 can be taken together to form a 4-8 membered
optionally substituted ring;
• R25 is hydroxyl,acylamino, -N(R20)COR20,-N(R20)C(O)OR20, ~N(R20)SO2(R20),
-COR20N(R20)2, -OC(O)R20N(R20)(R20), - SO2N(R20)(R20), -N(R20)(R20), -COOR20,
• -C(0)N(OH)(R21), -OS(0)2OR19, -S(0)2OR2°, ~OP(L)(OR20)(OR20), -NP(O)(OR20)(OR20), or
■ -P(O)(OR20)(OR20). ■ __.'_., ,,,„,.~^ — - — -~~~~^_ __
[0098] The present invention specifically provides compounds represented by the groua
consisting of: /








[0099] In certain embodiments, the compounds of the present invention are represented by
any of the aforementioned compounds and the attendant definitions, wherein the compound is
represented by the formula:

[0100] In one embodiment, the present invention provides compounds represented by a
compound of Formula 2:
r
or a pharmaceutically acceptable salt thereof;
wherein each R1 and R8 is independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloalkyl, aralkyl, heteroaryl, heteroaralkyl, halide, sulfhydryl, alkylthio, arylthio,

aralkyltbio, hydroxyl, alkoxyl, aryloxy, acyloxy, amino, alkylamino, arylamino, acylarnino,
aralkylamino, nitro, acylfbio, carboxamide, sulfonamide, carboxyl, nitrile, sulfate,
~OP(L)(OR20)2, -X-C(L>R21 or -X-C(L)-X-R21;
wherein R1 may also be a sugar;
X is O or NR wherein R is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl or aralkyl;
L is O or S;
R2 and R9 are independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloalkyl, aralkyl, alkoxyl, aryloxy, acyloxy, halide, sulfhydryl, alkylthio, arylthio,
aralkylthio, hydroxyl, amino, alkylamino, arylamino, acylamino, aralkylamino, heteroaryl, or
heteroaralkyl;
eachR5 andR11 is independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloalkyl, aralkyl, alkoxyl, aryloxy, acyloxy, halide, hydroxyl, amino, alkylamino,
arylamino, acylamino, aralkylamino, alkylseleno, aralkylseleno, arylseleno, alkylthio,
aralkylthio, arylthio, heteroaryl, or heteroaralkyl;
each R3, R4, R6, R7, R13 and R14 is independently H, alkyl, alkenyl, alkynyl, aryl,
cycloalkyl, heterocycloalkyl, aralkyl, alkoxyl, aryloxy, acyloxy, halide, hydroxyl, amino,
alkylamino, arylamino, acylamino, aralkylamino, heteroaryl, or heteroaralkyl;
wherein R1 and R2 and/or R8 and R9 taken together, along with the carbon to which they
are bonded, form-(OO)-, -(OS)-, -(C=N(OR20))-, -(ON(R20)>, -(C=N(N(R20)(R20))), or
form an optionally substituted 3-8 membered ring; or
R4 and R5 taken together and/or R5 and R6 taken together and/or R10 and R11 taken
together form a double bond or form a group represented by lb

wherein Z is NR21, O, or C(R23)(R23);
R12 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, hydroxyl, aralkyl,
heteroaryl, heteroaralkyl, haloalkyl, alkoxyl, -C(0)R21, -C02R21, -S02R21, -C(0)N(R21)(R21),
-[C(R21)2]q-R21, -[(W)-N(R21)C(0)]qR21, -[(W)-C(0)]qR21, -[(W)-C(0)0]qR21,
-[(W)-OC(0)]qR21, -[(W)-S02]qR21, -[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R21)]qR21,
-[(W)-0]qR21, -[(W)-N(R21)]qR21, or -[(W)-S]qR21;
wherein W is a diradical, and q is 1,2, 3,4, 5, or 6;

R15, R16, and R17 are independently H, alkoxyl, aryloxy, acyloxy, halide, hydroxyl,
amino, alkylamino, aiyl amino, acylamino, aralkylammo; or R1^ and R16 talcen together, along
with the carbon to winch they are bonded, form -C(O)- or-C(S)-; •
RIS and R19 are independently H, alkyl, araalkyi, halide, amido, or ester;
R20 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycioalkyl, aralkyl, heteroaryl, or
heteroaralkyl; or any two occuiTences of R2 on the same substituent can be taken together to
form a 4-8 membered optionally substituted ring;
R2J is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycioalkyl, aralkyl, heteroaryl,
heteroaralkyl or -[C(R20)2] P-R25 wherein p is 0-6; or any two occurrences of R21 on the same
substituent can be taken together to form a 4-8 membered optionally substituted ring;
R23 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycioalkyl, aralkyl, heteroaryl,
heteroaralkyl, halide, alkoxyl, aryloxy, acyloxy, silyloxy, nitrile, -C(0)R21, -C02R21, -S02R21,
and-C(0)N(R2I)2; and
R25is hydroxyl, acylamino, -N(R20)COR20, -N(R20)C(O)OR20, -N(R20)SO2(R20),
-COR20N(R20)2, -OC(O)R20N(R20)(R20), -SO2N(R20)(R20), -N(R20)(R20), -COOR20,
-C(0)N(OH)(R21), -OS(0)2OR20, -S(0)2OR2°, -OP(L)(OR20)(OR20), -NP(O)(OR20)(OR20), or
-P(O)(OR20)(OR20);
provided that there is at least one group represented by formula lb on said compound of
formula 2.
[0101] In certain embodiments, the compounds of the present invention are represented byt
Formula 2 and the attendant definitions, wherein herein R13, R1"', R1S, R16, and R17 are hydrogen.
"(0102] In certain embodiments, the compounds of the present invention are represented by;
Formula 2 ;&nd the attendant definitions, wherein R1 is hydroxyl, sugar, -OP(L)(OR.20)2, ~X-C(L)-R21, or
-X-C(L)-X-R ; or R and R taken together, along with the carbon to winch they are bonded,
form -C(O)-.
p
[0103] In certain embodiments, the compounds of the present invention are represented by,
Formula 2 and the attendant definitions, wherein R and R5 taken together form a double bond.
[0104] In certain embodiments, the compounds of the present invention are represented by
' Formula 2 and the attendant definitions, wherein R and R" taken together, along with the carbon to which
they are bonded, form -0(0)-.
■ ' [0105] In certain embodiments, the compounds of the present invention are represented by
. Formula 2 and the. attendant definitions, wherein R is hydroxyl and R.2 is II.


wherein:
Z is C(R23)(R23).
*
[0111] In certain embodiments, the compounds of the present invention are represented by
Formulas and the attendant definitions, wherein R8 and R9 are hydrogen; or Rs and R9 taken together,
along with the carbon to which they are bonded, is -C(O)-.
[0112] In certain embodiments, the compounds of the present invention are represented by
Formula 2 and the attendant definitions, wherein R12 is PI, alkyl, cycloalkyl, aralkyi, hete.roaiyl,
heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R2l)C(0)]qR21, -[(W)-N(R21)S02]qR21,
-[(W)-C(0)N(R21)]qR21, -[(W)-0]qR21, -[(W)-C(0)]qR21, or -[(W)-C(0)OJqR21.
[0113] In certain embodiments, the compounds of the present invention are represented by
Fonnula 2 and the attendant definitions, wherein R!3, Ri4, R35, R1 , and R17 are hydrogen; and R12 is H,
allcyl, cycloalkyl, aralkyi, heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl,
-[(W)-N(R2I)C(0)]qR21, -[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R2,)]qR21, -[(W)-0]qR21,
-[(W)-C(0)]qR21, or -[(W)-C(0)0]qR21.
[0114] In certain embodiments, the compounds of the present invention are represented by
Formula 2 and the attendant definitions, wherein R4 and RD taken together form a double bond; R1 and R2
:d:?n together, along with the carbon to which they are bonded, form -C(0)-; and R1" is H,
:.vikyl, cycloalkyl, aralkyi, heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl,
-[{W)-N(R2i)C(0)]qR2i, -[(W)-N(R21)S02]qR2!, -[(W)-C(0)N(R2I)]qR21, -r.(W)-0]qR21,
-[{W)-C(0)]qR21, or -[(W)-C(0)0]qR21.
[0115] In certain embodiments, the compounds of the present invention are represented by
Formula 2 and the attendant definitions, wherein R1 is hydroxyl and R2 is PI; and R12 is PI, alkyl, cycloalkyl,
aralkyi, heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R2I)C(0)]qR2!,
-[(V/)-N(R21)S02]qR21, -[(W)-C(0)N(R21)jqR21,' -[(W)-0]qR21, -[(W)-C(0)]qR21, or
.. -[(W)-C(0)0]qR2i.
[0116] In certain embodiments, the compounds of the present invention are represented
by a compound of the fonnula:


wherein:
R12 is H, alkyl, aryl, cycloalkyl, heterocycloalkyl, hydroxyl, aralkyl, heteroaryl,
heteroaralkyl, haloalkyl, alkoxyl, -C(0)R21, -C02R21, -S02R21, -C(0)N(R21)(R21),
-[C(R21)2]P-R21, -[(W)-N(R21)C(0)]qR21, -[(W)-C(0)]qR21, -[(W)-C(0)0]qR2-[(W)-OC(0)]qR21, -[(W)-S02]qR21, -[(W)-N(R2I)S02]qR21, -[(W)-C(0)N(R21)]qR21;
-[(W)-0]qR21, -[(W)-N(R21)]qR21, or -[(W)-S]qR21;
qis 1,2, 3,4, 5, or 6;
R20 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl, or
heteroaralkyl; or any two occurrences of R20 can be taken together to form a 4-8 membered
optionally substituted ring;
R21 is H, alkyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl, heteroaralkyl or
-[C(R )2]P-R ; or any two occurrences of R can be taken together to form a 4-8 membered
optionally substituted ring;
R25 is hydroxyl, acylamino, -N(R20)COR20, -N(R20)C(O)OR20, -N(R20)SO2(R20),
-COR20N(R20)2, -OC(O)R20N(R20)(R20), - SO2N(R20)(R20), -N(R20)(R20), -COOR20,
-C(0)N(OH)(R21), -OS(0)2OR19, -S(0)2OR20, -OP(L)(OR20)(OR20), -NP(O)(OR20)(OR20), or
-P(O)(OR20)(OR20).
[0117] The present invention specifically provides compounds represented by the group
consisting of:






[0118] In certain embodiments, the compounds of the present invention are represented by
any of the aforementioned compounds and the attendant definitions, wherein the compound is I
represented by the formula: I

[0119] In certain embodiments, the present invention relates to a pharmaceutical
composition comprising any one or more of the aforementioned compounds; and a
pharmaceutically acceptable excipient.

^Synthesis of SteroidaLAlkaloid Compounds J
[03C2p] The cyclopropyl steroidal alkaloid derivatives of the present invention can be
prepared directly from a steroidal alkaloid isolated as a natural product (or synthesized) or N-
protected forms of these compounds. Suitable nitrogen protecting groups include, but are not
limited to Fmoc, Alloc, Boc, Troc, trifluoroacetate, Tosyl, Cbz, ethyl cyanide, and Bn.
[0121] A variety of cyclopropanating agents can be used to cyclopropanate the steroidal
alkaloid. 1,1-Haloalkylmetal complexes, including reactive species referred to as carbenoids, are
commonly used to cyclopropanate olefins. These reagents are typically made using a
diiodoalkane or diazoalkane and a metal or organometalic species such as EtzZn, ZB113AI,
samarium, copper, rhodium, or palladium, hi certain embodiments, Et2Zn and diiodomethane are
used to affect the cyclopropanation. Other known cyclopropanation methods such as those
utilizing sulfur ylides to react with an olefin conjugated to a carbonyl to add a CH2 or CH-alkyl
or CH-aryl group, and metal-catalyzed decomposition of diazoalkyl and a-diazo-carbonyl
compounds, such as diazomethane and ethyl diazoacetate, can also be used: these methods
readily provide cyclopropanes having alkyl, aryl, alkoxycarbonyl (-COOR), or acyl
substituents. For example, the addition of ethyl diazopropionate (EtChC-C^TSy-Me) to an
olefinic compound in an organic solvent containing a metal catalyst such as copper or palladium
results in formation of a cyclopropane containing a group represented by formula lb wherein Z
represents C(R23)2, in which one R23 is Me and the other R23 is COOEt.
[0122] By carefully selecting the cyclopropanating agent, site selectivity can be achieved in
the cyclopropanation of steroidal alkaloids with more than one olefin. For example, if
diiodomethane and Et2Zn are used to cyclopropanate jervine under certain conditions only the
more electron rich olefin will react.
[0123] The diastereoselectivity of the cj'clopropanation can be controlled in a number of
ways. For example, lowering the temperature of the cyclopropanation reaction can lead to higher
diastereoselectivities. Alternatively, a chiral cyclopropanating agent can be used that can
distinguish between each diastereo-face of the steroidal alkaloid. Facial selectivity in the
cyclopropanation can also be achieved by using substrate directed reactions (i.e.
cyclopropanation of allylic alcohols using Et2Zn/CH2l2 reagents).
[0124] The cyclopropanation reactions may be conducted in an aprotic solvent, preferably
one in which the reaction ingredients are substantially soluble. Suitable solvents include ethers,
such as diethyl ether, 1,2-dimethoxyethane, diglyme, t-butyl methyl ether, tetrahydrofuran and
the like; halogenated solvents, such as chloroform, dichloromefhane, dichloroethane, and the

like; aliphatic or aromatic hydrocarbon solvents, such as benzene, xylene, toluene, hexane,
pentane and the like; esters and ketones, such as ethyl acetate, acetone, and 2-butanone; polar
aprotic solvents, such as acetonitrile, dimethylsulfoxide, dimethylformamide, and the like; or
combinations of two or more solvents. In a preferred embodiment, dichloromethane is the
solvent used for the cyclopropanation when a dialkyl zinc and diiodomethane is used.
[0125] Following synthesis of the cyclopropanated steroidal alkaloid core, the compound
maybe derivatized using a variety of functionalization reactions known in the art.
Representative examples include palladium coupling reactions to alkenylhalides or aryl halides,
oxidations, reductions, reactions with nucleophiles, reactions with electrophiles, pericyclic
reactions, installation of protecting groups, removal of protecting groups, and the like.
[0126] In the presence of Lewis or Bronsted acids the cyclopropyl cyclopamine analogs of
the present invention undergo a hereto unobserved rearrangement and ring expansion to afford
novel cyclopamine analogs in which the D ring has been, expanded by one carbon. The
cyclopropyl ring may be substituted or unsubstituted. In cases where the cyclopropyl ring is
substituted, the groups attached to the methylene of the cyclopropane will be installed onto the
D ring after rearrangement and ring expansion. Suitable acids include, but are not limited to
ZnL;, BF3, methanesulfonic acid, diaryloxyphosporic acids, and HC1. In a preferred embodiment
of the invention the Lewis acid used is BF3. These homologated analogs maybe further
functionalized using a variety of functionalization reactions known in the art. Representative
examples include palladium coupling reactions to alkenylhalides or aryl halides, oxidations,
reductions, reactions with nucleophiles, reactions with electrophiles, pericyclic reactions,
installation of protecting groups, removal of protecting groups, and the like.
/' Methods of the Invention }
V_|ftl27] The present invention further provides methods for treating, ameliorating one or
more of the symptoms of, and reducing the severity of hyperproliferative disorders, i.e. cancer,
as well as other hedgehog pathway mediated disorders or conditions.
[0128] Hedgehog pathway antagonists are currently being explored in a large number of
clinical conditions where a therapeutic effect can be obtained for a condition or disorder by
inhibiting one or more aspects of Hedgehog pathway activity. Although the primary focus has
been on cancer, investigators have found that small molecule inhibition of the hedgehog
pathway ameliorates the symptoms of psoriasis (Tas, et al, 2004 Dermatology 209: 126-131,
published US patent application 20040072913 (herein incorporated by reference)). Psoriasis is a

veiy common, chronic skin disorder typically characterized by skin lesions usually containing
erythematous papules and plaques with a silver scale, although there are variations both on the
skin and in other parts of the body. Psoriasis is currently thought to be an autoimmune disease
but its etiology is still poorly understood. In one study, topical application of cyclopamine to
psoriasis lesions led to full or partial regression of the lesion with a decrease in inflammatory
cells (Tas et al, supra).
[0129] The hedgehog pathway antagonists of the present invention may be used to treat or
prevent psoriasis when administered as a single agent or when administered in combination with
one or more other anti-psoriasis agents including, but not limited to, corticosteroids, tar,
calcipotriene, tazarotene, calcineurin inhibitors, ultraviolet irradiation, methotrexate, retinoids,
cyclosporine, immunomodulatory drugs, etanercept, alefacept, efalizumab, and infliximab.
[0130] Many tumors and proliferative conditions have been shown to depend on the
hedgehog pathway. The growth of such cells and survival can be affected by treatment with the
compounds of the present invention. For example, small molecule inhibition of the hedgehog
pathway has been shown to inhibit the growth of basal cell carcinoma (Williams, et al, 2003
PNAS 100: 4616-21), medulloblastoma (Berman et al, 2002 Science 297: 1559-61), pancreatic
cancer (Berman et al, 2003 Nature 425: 846-51), gastrointestinal cancers (Berman et al, 2003
Nature 425: 846-51, published PCT application WO 05/013800), esophageal cancer (Berman et
al, 2003 Nature 425: 846-51), lung cancer (Watkins et al, 2003. Nature 422: 313-7), and
prostate cancer (Karhadkar et al, 2004. Nature 431_: 707-12).
[0131] In addition, it has been shown that many cancer types have uncontrolled activation of
the hedgehog pathway, for example, breast cancer (Kubo et al, 2004. Cancer Research 64:
6071-4), heptacellular cancer (Patil et al, 2005. 96th Annual AACR conference, abstract #2942
Sicklick et al, 2005. ASCO annual meeting, abstract #9610), hematological malignancies
(Watkins and Matsui, unpublished results), basal carcinoma (Bale & Yu, 2001. Human Molec.
Genet. 10:757-762 Xie et al, 1998 Nature 39JJ 90-92), medulloblastoma (Pietsch et al, 1997.
Cancer Res. 57: 2085-88), and gastric cancer (Ma et al, 2005 Carcinogenesis May 19, 2005
(Epub)).
[0132] Cancers or neoplastic diseases and related disorders that can be treated by ^
administration of compounds and compositions of the present invention, include, but are not |
limited to Adrenal Cortical Cancer, Anal Cancer, Aplastic Anemia, Bile Duct Cancer, Bladder jL
'Cancer7 Bone Cancer, Brain/CNS Tumors, Breast Cancer, Cervical Cancer, Non-Hodgkin's I
Lymphoma, Colon Cancer, Rectum Cancer, Endometrial Cancer, Esophagus Cancer, Ewing's /

Family of Tumor, Eye Cancer, Gallbladder Cancer, Gastrointestinal Carcinoid Tumors,
Gastrointestinal Stromal Tumors, Gestational Trophoblastic Disease, Hodgkin's Disease,
Kaposi's Sarcoma Kidney Cancer, Laryngeal and Hypopharyngeal Cancer, Acute Lymphocytic
Leukemia, Acute Myeloid Leukemia, Children's Leukemia, Chronic Lymphocytic Leukemia,
Chronic Myeloid Leukemia, Liver Cancer, Lung Cancer, Lung Carcinoid Tumor, Non-
Hodgkin's type Lymphoma, Male Breast Cancer, Malignant Mesothelioma, Multiple Myeloma,
Myelodysplastic Syndrome, Nasal Cavity and Paranasal Cancer, Nasopharyngeal Cancer,
Neuroblastoma, Oral Cavity Cancer, Oropharyngeal Cancer, Osteosarcoma, Ovarian Cancer,
Pancreatic Cancer, Penile Cancer, Pituitary Tumor, Prostate Cancer, Retinoblastoma,
Rhabdomyosarcoma, Salivary Gland Cancer, Sarcoma, Melanoma Skin Cancer, Nonmelanoma
Skin Cancer, Stomach Cancer, Testicular Cancer, Thymus Cancer, Thyroid Cancer, Uterine
Sarcoma, Vaginal Cancer, Vulvar Cancer, Waldenstrom's Macroglobulinemia, and Wilms'
Tumor.
[0133] The methods and compositions of the present invention can be used in the treatment
of human cancers, for example basal cell carcinomas and other tumors of epithelial tissues such
as the skin. Additionally, compounds of the present invention can be employed as part of a
treatment basal cell carcinoma, pancreatic cancer, prostate cancer, sarcoma, lymphomas,
leukemia, gastrointestinal cancer, multiple myeloma, small cell lung cancer, glioma, breast
cancer, hepatocellular, or medulloblastoma by administering a therapeutically effective amount
of at least one of the compounds of the present invention as a single agent or in combination
with another anti-cancer agent.
[0134] The methods and compositions of the present invention can be used in the treatment
of neoplastic or hyperplastic transformations such as may occur in the central nervous system.
For instance, the compounds of the present invention can be utilized to cause such transformed
cells to become either post-mitotic or apoptotic. The present method may, therefore, be used as
part of a treatment for, e.g., malignant gliomas, meningiomas, medulloblastomas,
neuroectodermal tumors, and ependymomas.
[0135] In one embodiment, the present method can be used as part of a treatment regimen
for malignant medulloblastoma and other primary CNS malignant neuroectodermal tumors.
[0136] In certain embodiments, the present invention relates to a method of treating cancer,
comprising administering to a subject in need thereof a therapeutically effective amount of one
or more of any of the aforementioned compounds.

[0137] In certain embodiments, the present invention relates to a method of treating cancer,
comprising administering to a subject in need thereof a therapeutically effective amount of a
compound of any one or more of the aforementioned compounds, wherein the cancer is located
in the subjects head, neck, nasal cavity, paranasal sinuses, nasopharynx, oral cavity, oropharynx,
larynx, hypopharynx, salivary glands, paragangliomas, pancreas, stomach, skin, esophagus, liver
and biliary tree, bone, intestine, colon, rectum, ovaries, prostate, lung, breast, lymphatic system,
blood, bone marrow central nervous system, or brain. r
[0138] hi certain embodiments, the present invention relates to a method of treating cancer^
comprising administering to a subject in need thereof a therapeutically effective amount of a
compound of one or more of any of the aforementioned compounds, wherein the cancer is basal
cell carcinoma, pancreatic cancer, prostate cancer, sarcoma, lymphomas, leukemia, gastric
cancer, esophageal cancer, biliary cancer, colon cancer, multiple myeloma, small cell lung
cancer, glioma, breast cancer, hepatocellular, or medulloblastoma. j
[0139] In certain embodiments, the present invention relates to the aforementioned method I
wherein the compound is used in combination with radiation therapy or another anti-cancer Vy
chemofherapeutic agent.
[0140] In certain embodiments, the present invention relates to any aforementioned method
wherein the compound is administered locally to a tumor or systemically to a patient.
[0141] In certain embodiments, the present invention relates to any aforementioned method
wherein the mode of administration of said compound is inhalation, oral, intravenous,
sublingual, ocular, transdermal, rectal, vaginal, topical, intramuscular, intra-arterial, intrathecal,
subcutaneous, buccal, or nasal.
[0142] In certain embodiments, the present invention relates to any aforementioned method
wherein the mode of administration is oral, intravenous, or topical.
[0143] In certain embodiments, the present invention relates to a method for antagonizing
the hedgehog pathway in a cell, comprising contacting a cell expressing smoothened with an
effective amount of any one or more of the aforementioned compounds.
[0144] In certain embodiments, the present invention relates to a method for antagonizing
the hedgehog pathway in a cell, comprising contacting a cell expressing smoothened with an
effective amount of any one or more of the aforementioned compounds, wherein said cell
expressing smoothened is contacted with said compound in vitro.
[0145] In certain embodiments, the present invention relates to a method for antagonizing
the hedgehog pathway in a cell, comprising contacting a cell expressing smoothened with an

[0106] In certain embodiments, the compounds of the present invention are represented by
Formula 2 .^ the attendant definitions, wherein R1 is hydroxyl, R2 is H; and R1 and Rb taken together form
a double bond; or R and R taken together form a group represented by lb;

wherein:
Z is C(R23)(R23).
[0107] In certain embodiments, the compounds of the present invention are represented by
Formula 2 and the attendant definitions, wherein R10 and Ru taken together form a double bond; or R1 and
R1 taken together form a group represented by lb;

wherein:
ZisC(R23)(R23).
[010S] In certain embodiments, the compounds of the present invention are represented by
FonnuIa_2 and the attendant definitions, wherein R5 and R6 taken together form a double bond and Ri0 and
R1! taken together form a double bond.
[0109] In certain embodiments, the compounds of the present invention are represented by
Formula 2 and the attendant definitions, wherein R1 and R2 taken together, along with the carbon to which
- they are bonded, form -C(O)-; R4 and R^ taken together form a double bond; and Ri0 and RH
taken together form a double bond; or R10 and R" taken together form a group represented by
lb;

wherein:
Z is C(R23)(R23).
[0110] hi certain embodiments, the compounds of the present invention are represented by
Formula 2 and the attendant definitions, wherein R1 is hydroxyl and R2 is H; R10 and R!' taken together
form a double bond; or R andR. taken together form a group represented by lb;

effective amount of any one or more of the aforementioned compounds, wherein said cell
expressing smoothened is contacted with said compound in vivo.
[0146] In certain embodiments, the present invention relates to a method for antagonizing
the hedgehog pathway in a cell, comprising contacting a cell expressing smoothened with an
effective amount of any one or more of the aforementioned compounds, wherein said cell
expressing Smo is within the body of a patient.
[0147] In certain embodiments, the present invention relates to a method of treating or
preventing psoriasis in a subject, comprising administering to a subject in need thereof a
therapeutically effective amount of any one or more of the aforementioned compounds.
[0148] In certain embodiments, the present invention relates to the aforementioned method
of treating or preventing psoriasis wherein the mode of administration of said compound is
topical.
[0149] ha certain embodiments, one or more compounds of the present invention are used to
treat or prevent psoriasis in combination with one or more anti-psoriasis agents including, but
not limited to, corticosteroids, tar, calcipotriene, tazarotene, calcineurin inhibitors, ultraviolet
irradiation, methotrexate, retinoids, cyclosporine, immunomodulatory drags, etanercept,
alefacept, efalizumab, and infliximab.., .....,.,. ......._.-..,..,,_,._..,„.....
Treatment of Cancer in Combination with Chemotherapy or Radiotherapy /
- .^ [0150] In certain embodiments, one or more compounds of the present invention are used to
treat or prevent cancer or neoplastic disease in combination with one or more anti-cancer, /
chemotherapeutic agents including, but not limited to, gemcitabine, methotrexate, taxol, I
mercaptopurine, thioguanine, hydroxyurea, cytarabine, cyclophosphamide, ifosfamide, y
nitrosoureas, cisplatin, carboplatin, mitomycin, dacarbazine, procarbizine, etoposides, f
prednisolone, dexamethasone, cytarbine, campathecins, bleomycin, doxorubicin, idarubicin, 1
daunorubicin, dactinomycin, plicamycin, mitoxantrone, asparaginase, vinblastine, vincristine,
vinorelbine, paclitaxel, and docetaxel. In a preferred embodiment, one or more compound of the
present invention is used to treat or prevent cancer or neoplastic disease in combination with one
or more chemotherapeutic or other anti-cancer agents including, but not limited to radiation (e.g.
y-radiation), nitrogen mustards (e.g. cyclophosphamide, Ifosfamide, Trofosfamide,
Chlorambucil, Estramustine, and Melphalan), Nitrosoureas (e.g. carmustine (BCNU) and
Lomustine (CCNU)), Alkylsulphonates (e.g. busulfan and Treosulfan), Triazenes (e.g.
Dacarbazine and Temozolomide), Platinum containing compounds (e.g. Cisplatin, Carboplatin, /

and oxaliplatin), Vinca alkaloids (e.g. vincristine, Vinblastine, Vindesine, and Vinorelbine),
Taxoids (e.g. paclitaxel and Docetaxol), Epir >dophyllins (e.g. etoposide, Teniposide,
Topotecan, 9-Aminocamptothecin, Camptoirinotecan, Crisnatol, Mytomycin G, and Mytomycin
C), Anti-metabolites,_DHFR inhibitors (e.g. methotrexate and Trimetrexate), IMP
dehydrogenase Inhibitors (e.g. mycophenolic acid, Tiazofurin, Ribavirin, and EICAR),
Ribonuclotide reductase hihibitors (e.g. hydroxyurea and Deferoxamine), Uracil analogs (e.g.
Fluorouracil, Floxuridine, Doxifluridine, Ratitrexed, and Capecitabine), Cytosine analogs (e.g.
cytarabine (ara C), Cytosine arabinoside, and Fludarabine), Purine analogs (e.g. mercaptopurine
and Thioguanine), Anti-estrogens (e.g. Tamoxifen, Raloxifene, and Megestrol), LHRH agonists
(e.g. goscrclin and Leuprolide acetate), Anti-androgens (e.g. flutamide and Bicalutamide),
Vitamin D3 analogs (e.g. EB 1089, CB 1093, and KH 1060), Photodyamic therapies (e.g.
vertoporfin (BPD-MA), Phthalocyanine, photosensitizer Pc4, and Demethoxy-hypocrellin A
(2BA-2-DMHA)), Cytokines (e.g. Interferon a, Interferon y, and Tumor necrosis factor),
Isoprenylation inhibitors (e.g. Lovastatin), Dopaminergic neurotoxins (e.g. l-methyl-4-
phenylpyridinium ion),Cell cycle inhibitors (e.g. staurosporine), Actinomycins (e.g.
Actinomycin D and Dactinomycin), Bleomycins (e.g. bleomycin A2, Bleomycin B2, and
Peplomycin), Anthracyclines (e.g. daunorubicin, Doxorubicin (adriamycin), Idarubicin,
Epirubicin, Pirarubicin, Zorubicin, and Mitoxantrone), MDR inhibitors (e.g. verapamil), Ca2+
ATPase inhibitors (e.g. thapsigargin), Antibodies (e.g. Avastin, Erbitux, Rituxan, and Bexxar),
corticosteroids (e.g. prednilone, predisone, etc), Imatinib, Thalidomide, Lenalidomide,
Bortezomib, Gemcitabine, Erlotinib, Gefitinib, Sorafenib, and Sutinib.
[0151] The chemotherapeutic agent and/or radiation therapy can be administered according
to therapeutic protocols well known in the art. It will be apparent to those skilled in the art that
the administration of the chemotherapeutic agent and/or radiation therapy can be varied
depending on the disease being treated and the known effects of the chemotherapeutic agent
and/or radiation therapy on that disease. Also, in accordance with the knowledge of the skilled
clinician, the therapeutic protocols (e.g., dosage amounts and times of administration) can be
varied in view of the observed effects of the administered therapeutic agents (i.e., antineoplastic
agent or radiation) on the patient, and in view of the observed responses of the disease to the
administered therapeutic agents, and observed adverse affects.
[0152] Also, in general, compounds of the present invention and the chemotherapeutic agent
do not have to be administered in the same pharmaceutical composition, and may, because of
different physical and chemical characteristics, have to be administered by different routes. For

example, compounds of the present invention may be administered intravenously to generate
and maintain good blood levels, while the chemotherapeutic agent may be administered orally.
The determination of the mode of administration and the advisability of administration, where
possible, in the same pharmaceutical composition, is well within the knowledge of the skilled
clinician. The initial administration can be made according to established protocols known in the
art, and then, based upon the observed effects, the dosage, modes of administration and times of
administration can be modified by the skilled clinician.
[0153] The particular choice of chemotherapeutic agent or radiation will depend upon the
diagnosis of the physicians and their judgment of the condition of the patient and the appropriate
treatment protocol.
[0154] A compound of the present invention, and chemotherapeutic agent and/or radiation
may be administered concurrently (e.g., simultaneously, essentially simultaneously or within the
same treatment protocol) or sequentially, depending upon the nature of the proliferative disease,
the condition of the patient, and the actual choice of chemotherapeutic agent and/or radiation to
be administered in conjunction (i.e., within a single treatment protocol) with a compound of the
present invention.
[0155] If a compound of the present invention and the chemotherapeutic agent and/or
radiation are not administered simultaneously or essentially simultaneously, then the optimum
order of administration of the compound of the present invention, and the chemotherapeutic
agent and/or radiation, may be different for different tumors. Thus, in certain situations the
compound of the present invention may be administered first followed by the administration of
the chemotherapeutic agent and/or radiation; and in other situations the chemotherapeutic agent
and/or radiation may be administered first followed by the administration of a compound of the
present invention. This alternate administration may be repeated during a single treatment
protocol. The determination of the order of administration, and the number of repetitions of
administration of each therapeutic agent during a treatment protocol, is well within the
knowledge of the skilled physician after evaluation of the disease being treated and the condition
of the patient. For example, the chemotherapeutic agent and/or radiation maybe administered
first, especially if it is a cytotoxic agent, and then the treatment continued with the
administration of a compound of the present invention followed, where determined
advantageous, by the administration of the chemotherapeutic agent and/or radiation, and so on
until the treatment protocol is complete.

[0156] Thus, in accordance with experience and knowledge, the practicing physician can
modify each protocol for the administration of a component (therapeutic agent, i.e., compound
of the present invention, chemotherapeutic agent or radiation) of the treatment according to the
individual patient's needs, as the treatment proceeds.
Pharmaceutical Compositions
[0157] In another embodiment, the present invention provides pharmaceutically acceptable
compositions which comprise a therapeutically-effective amount of one or more of the
compounds described above (Formula 1 and 2), formulated together with one or more /
pharmaceutically acceptable carriers (additives) and/or diluents. The pharmaceutical I
compositions of the present invention may be specially formulated for administration in solid or ^
liquid form, including those adapted for the following: (1) oral administration, for example,
drenches (aqueous or non-aqueous solutions or suspensions), tablets, e.g., those targeted for I
buccal, sublingual, and systemic absorption, boluses, powders, granules, pastes for application to j
the tongue; (2) parenteral administration, for example, by subcutaneous, hitramuscular, |
intravenous or epidural injection as, for example, a sterile solution or suspension, or sustained- ]
release formulation; (3) topical application, for example, as a cream, ointment, or a controlled-
release patch or spray applied to the skin; (4) intravaginally or intrarectally, for example, as a
pessary, cream or foam; (5) sublingually; (6) ocularly; (7) transdermally; (8) pulmonarily, or (9)
nasally. As set out above, certain embodiments of the present compounds may contain a basic
functional group, such as amino or alkylamino, and are, thus, capable of forming
pharmaceutically-acceptable salts wim pharmaceutically-acceptable acids. The term
"pharmaceutically-acceptable salts" in this respect, refers-to the relatively non-toxic, inorganic
and organic acid addition salts of compounds of the present invention. These salts can be
prepared in situ in the administration vehicle or the dosage form manufacturing process, or by
separately reacting a purified compound of the invention in its free base form with a suitable /
organic or inorganic acid, and isolating the salt thus formed during subsequent purification. /
Representative salts include the hydrobromide, hydrochloride, sulfate, bisulfate, phosphate, /
nitrate, acetate, valerate, oleate, palmitate, stearate, laurate, benzoate, lactate, phosphate,
tosylate, citrate, maleate, fumarate, succinate, tartrate, napthylate, mesylate, glucoheptonate,
lactobionate, and laurylsulphonate salts and the like. (See, for example, Berge et al. (1977)
"Pharmaceutical Salts", J. Pharm, Sci. 66:1-19)

[0158] The pharmaceutically acceptable salts of the compounds of the present invention
include the conventional nontoxic salts or quaternary ammonium salts of the compounds, e.g.,
from non-toxic organic or inorganic acids. For example, such conventional nontoxic salts
include those derived from inorganic acids such as hydrochloride, hydrobromic, sulfuric,'
sulfamic, phosphoric, nitric, and the like; and the salts prepared from organic acids such as
acetic, propionic, succinic, glycolic, stearic, lactic, malic, tartaric, citric, ascorbic, palmitic,
maleic, hydroxymaleic, phenylacetic, glutamic, benzoic, salicyclic, sulfanilic, 2-acetoxybenzoic,
fumaric, toluenesulfonic, methanesulfonic, ethane disulfonic, oxalic, isothionic, and the like.
[0159] In other cases, the compounds of the present invention may contain one or more
acidic functional groups and, thus, are capable of forming pharmaceutically-acceptable salts
with pharmaceutically-acceptable bases. The term "pharmaceutically-acceptable salts" in these
instances refers to the relatively non-toxic, inorganic and organic base addition salts of
compounds of the present invention. These salts can likewise be prepared in situ in the
administration vehicle or the dosage form manufacturing process, or by separately reacting the
purified compound in its free acid form with a suitable base, such as the hydroxide, carbonate or
bicarbonate of a pharmaceutically-acceptable metal cation, with ammonia, or with a
pharmaceutically-acceptable organic primary, secondary or tertiary amine. Representative alkali
or alkaline earth salts include the lithium, sodium, potassium, calcium, magnesium, and
aluminum salts and the like. Representative organic amines useful for the fonnation of base
addition salts include ethylamine, diethylamine, ethylenediamine, ethanolamine,
diethanolamine, piperazine and the like. (See, for example, Berge et al, supra)
[0160] Wetting agents, emulsifiers and lubricants, such as sodium lauryl sulfate and
magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening,
flavoring and perfuming agents, preservatives and antioxidants can also be present in the
compositions.
[0161] Examples of pharmaceutically-acceptable antioxidants include: (1) water soluble
antioxidants, such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium
metabisulfite, sodium sulfite and the like; (2) oil-soluble antioxidants, such as ascorbyl
palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), lecithin, propyl
gallate, alpha-tocopherol, and the like; and (3) metal chelating agents, such as citric acid,
emylenediamine tetraacetic acid (EDTA), sorbitol, tartaric acid, phosphoric acid, and the like.
[0162] Methods of preparing these formulations or compositions include the step of bringing
into association a compound of the present invention with the carrier and, optionally, one or

more accessory ingredients. In general, the formulations are prepared by uniformly and
intimately bringing into association a compound of the present invention with liquid carriers, or
finely divided solid carriers, or both, and then, if necessary, shaping the product.
[0163] Pharmaceutical compositions of the present invention suitable for parenteral
administration comprise one or more compounds of the invention in combination with one or
more pharmaceutically-acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions,
suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable
solutions or dispersions just prior to use, which may contain sugars, alcohols, antioxidants,
buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the
intended recipient or suspending or thickening agents.
[0164] Examples of suitable aqueous and nonaqueous carriers winch maybe employed in
the pharmaceutical compositions of the invention include water, ethanol, polyols (such as
glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof,
vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate. Proper
fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the
maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
[0165] These compositions may also contain adjuvants such as preservatives, wetting
agents, emulsifying agents and dispersing agents. Prevention of the action of microorganisms
upon the compounds of the present invention may be ensured by the inclusion of various
antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and
the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and
the like into the compositions. In addition, prolonged absorption of the injectable
pharmaceutical form may be brought about by the inclusion of agents which delay absorption
such as aluminum monostearate and gelatin.
[0166] In some cases, in order to prolong the effect of a drug, it is desirable to slow the
absorption of the drug from subcutaneous or intramuscular injection. This may be accomplished
by the use of a liquid suspension of crystalline or amorphous material having poor water
solubility. The rate of absorption of the dmg then depends upon its rate of dissolution which, in
turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a
parenterally-administered drug form is accomplished by dissolving or suspending the drug in an
oil vehicle.
[0167] Injectable depot forms are made by forming microencapsule matrices of the
compounds of the present invention in biodegradable polymers such as polylactide-

polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular
polymer employed, the rate of drug release can be controlled. Examples of other biodegradable
polymers include poly(orthoesters) and poly(anhydrides). Depot injectable formulations are also
prepared by entrapping the drug in liposomes or microemulsions which are compatible with
body tissue.
[0168] Formulations of the invention suitable for oral administration may be in the form of
capsules, cachets, pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or
tragacanth), powders, granules, or as a solution or a suspension in an aqueous or non-aqueous
liquid, or as an oil-in-water or water-in-oil liquid emulsion, or as an elixir or syrup, or as
pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as
mouth washes and the like, each containing a predetermined amount of a compound of the
present invention as an active ingredient. A compound of the present invention may also be
administered as a bolus, electuary or paste.
[0169] When the compounds of the present invention are administered as pharmaceuticals,
to humans and animals, they can be given per se or as a pharmaceutical composition containing,
for example, 0.1 to 99% (more preferably, 10 to 30%) of active ingredient in combination with a
pharmaceutically acceptable carrier.
[0170] These compounds may be administered to humans and other animals for therapy by
any suitable route of administration, including orally, nasally, as by, for example, a spray,
rectally, intravaginally, parenterally, intracisternally and topically, as by powders, ointments or
drops, including buccally and sublingually.
[0171] Regardless of the route of administration selected, the compounds of the present
invention, which may be used in a suitable hydrated form, and/or the pharmaceutical
compositions of the present invention, are formulated into pharmaceutically-acceptable dosage
forms by conventional methods known to those of skill in the art.
[0172] Actual dosage levels of the active ingredients in the pharmaceutical compositions of
the present invention may be varied so as to obtain an amount of the active ingredient which is
effective to achieve the desired therapeutic response for a particular patient, composition, and
mode of administration, without being toxic to the patient.
[0173] The selected dosage level will depend upon a variety of factors including the activity
of the particular compound of the present invention employed, or the ester, salt or amide thereof,
the route of administration, the time of administration, the rate of excretion or metabolism of the
particular compound being employed, the rate and extent of absorption, the duration of the

treatment, other drugs, compounds and/or materials used in combination with the particular
compound employed, the age, sex, weight, condition, general health and prior medical history of
the patient being treated, and like factors well known in the medical arts.
[0174] A physician or veterinarian having ordinary skill in the art can readily determine and
prescribe the effective amount of the pharmaceutical composition required. For example, the
physician or veterinarian could start doses of the compounds of the invention employed in the
pharmaceutical composition at levels lower than that required in order to achieve the desired
therapeutic effect and gradually increase the dosage until the desired effect is achieved.
[0175] In general, a suitable daily dose of a compound of the invention will be that amount
of the compound which is the lowest dose effective to produce a therapeutic effect. Such an
effective dose will generally depend upon the factors described above. Generally, oral,
intravenous, intracerebro ventricular and subcutaneous doses of the compounds of the present
invention for a patient, when used for the indicated analgesic effects, will range from about
0.0001 to about 100 mg per kilogram of body weight per day.
[0176] If desired, the effective daily dose of the active compound may be administered as
two, three, four, five, six or more sub-doses administered separately at appropriate intervals
throughout the day, optionally, in unit dosage forms. Preferred dosing is one administration per
day.
[0177] While it is possible for a compound of the present invention to be administered alone,
it is preferable to administer the compound as a pharmaceutical formulation (composition).
[0178] The subject receiving this treatment is any animal in need, including primates, in
particular humans, and other mammals such as equines, cattle, swine and sheep; and poultry and
pets in general.
[0179] The compound of the invention can be administered as such or in admixtures with
pharmaceutically acceptable carriers and can also be administered in conjunction with
antimicrobial agents such as penicillins, cephalosporins, aminoglycosides and glycopeptides.
Conjunctive therapy thus includes sequential, simultaneous and separate administration of the
active compound in a way that the therapeutical effects of the first administered one is not
entirely disappeared when the subsequent is administered.
Exemplification
[0180] The invention now being generally described, it will be more readily understood by
reference to the following examples, which are included merely for purposes of illustration of

certain aspects and embodiments of the present invention, and ai
invention.

[0181] To a solution of cyclopamine 2 (250 mg, 0.6 nimol, 1 eq) in DCM (10 mL) at rt was
added Fmoc-OSu (205 mg, 0.6 mmol, 1 eq) and the resulting mixture was stirred at rt overnight.
The resulting solution of crude Fmoc-cyclopamine was then cooled to 0 °C and was treated with
15% diethylzinc in toluene (0.5 mL, 0.6 mmol, 1 eq) and stirred for 30 min (Flask A).
[0182] Diiodomethane (0.4 mL, 6 mmol, 10 eq) in DCM (20 mL) at 0 °C was treated with
15% diethylzinc in toluene (3 mL, 3 mmol, 5 eq) and the resulting solution was stirred for 5 min
(Flask B).
[0183] The contents of Flask B were transferred to Flask A via cannula and the resulting
suspension was stirred for 5 h at rt. The reaction was quenched with HC1 (1 M), stirred for 10
min (until all white solid redissolved) and extracted with DCM (5x). The organic extracts were
dried (MgSC^), filtered over Celite and concentrated in vacuo. The residue was purified by
flash chromatography (1:1 Hex/AcOEt). The target 11,12-monocyclopropane was obtained as a
9:1 mixture of diastereoisomers, along with 20% of diastereomericbis-cyelopropanated products
(80% total recovery). This mixture was separated using preparative SFC chromatography.


[0184] Fmoc-monocyclopropyl cyclopamine 3 (100 mg, 0.15 mmol, 1 <.> at rt was treated with diethylamine (0.5 mL, 4.8 mmol, 32 eq) overnight, the .resulting solution
was concentrated in vacuo and the residue absorbed on silica gel and purified by flash
chromatography (2:1^> 1:1 Hex/AcOEt, and men 95:5•» 90:10"> 20:80 DCM/MeOH). The
desired product was obtained as a white solid (95% yield). MS (ESI(+)) m/e 426.31 (M+H)+.

[0185] To a solution of hydrocinnamic acid 5 (3.01 g, 20 mmol, 1 eq) in anhydrous
chloroform (30 mL) at 75 °C was added thionyl chloride (1.75 mL, 24.1 mmol, 1.2 eq) dropwise
over a period of 3 min. The mixture was refluxed for 3.5 h. The solvent was distilled off to give
the crude acid chloride as a light yellow viscous liquid. The crude was used without further
purification.


[0186] To a Triphasic mixture of 7 (3.16 g, 24.1 mmol, 1.2 eq) in DCM (30 mL) and an
aqueous solution of NaOH (2.0 M, 30 mL, 3 eq) at 25 °C was added a solution of the acid
chloride 6 (3.38 g, 20 mmol, 1 eq) in DCM (10 mL) and the resulting mixture was stirred at 25
°C for 3 h. The mixture was then neutralized with aqueous HC1 (2 M, 30 mL). The organic layer
was then separated and the aqueous layer was extracted with DCM (3 x 50 mL). The combined
organic layers were washed with HC1 (2.0 M, 25 mL), water (3 x 50 mL), saturated brine (50
mL), dried over magnesium sulfate and the solvent was evaporated under reduced pressure. The
crude was chromatographed on silica gel using 5% MeOH:DCM as eluant and the column was
then eluted with 10% MeOH: DCM to yield 1.141 g of compound 8.

[0187] To a mixture of the acid 8 (264 mg, 1 mmol, 1 eq), EDCI (231 mg, 1.2 mmol, 1.2
eq), and triethyl amine (168 u,L 1.2 mmo, 1.2 eq) in DCM (2 mL) at 0 °C was added allylamine
(90.3 uL, 1.2 mmol, 1.2 eq), and the resulting mixture was stirred at 0 °C for 1 h and allowed to
warm to 25 °C over a period of 2 h. The reaction mixture was added to water (50 mL), extracted
with DCM (4 x 25 mL), the combined organic layers were washed with 1 M HC1 (2 x 25 mL),
water (3 x 25 mL), satd brine (25 mL), dried over magnesium sulfate and the solvent was
evaporated off under reduced pressure to yield 287.5 mg of the desired product. This material
was used without further purification.

[0188] To a solution of the allyl amide 9 (70 mg, 0.23 mmol, 1 eq) in acetone (1 mL) and
water (0.3 mL) was added a solution of osmium tetroxide (0.35 mL, 0.035 mmol, 0.15 eq, 2.5

w/w in f-butanol). The reaction mixture was immediately cooled in ice soon after the addition of
the OSO4 solution and the resulting dark brown solution was stirred at 0 °C for 15 min. Sodium
periodate (110 nig, 0.51 mmol, 2.2 eq) was added in 5 portions to the above mixture and stirring
continued for 1 h at 0 °C and allowed to warm to 25 °C over a period of 2 h. The reaction
mixture was diluted with DCM (3 mL), filtered through a short plug of magnesium sulfate and
the filter cake was washed with DCM (4x3 mL). The filtrate was concentrated and the residue
(67.9 mg) was filtered through a short plug of RP silica gel using 5% MeOH: DCM to yield 38.9
mg of the desired product.

[0189] To a suspension of the 1 (10 mg, 0.023 mmol, 1 eq) in acetonitrile (2 mL) was added
a solution of the aldehyde 10 (17 mg, 0.056 mmol, 2.4 eq) in acetonitrile (0.3 mL) followed by
sodium triacetoxy borohydride (6.5 mg, 0.031 mmol, 1.3 eq) and the reaction mixture was
stirred at 25 °C for 16 h. The solvent was then evaporated under reduced pressure and the
residue was chromatographed on silica gel (7 cm x 10 mm) using 3% Methanol: DCM to yield
24.6 mg of crude material. This material was re-subjected to column chromatography on silica
gel using 2% MeOH: DCM and recovered 18.2 mg of an impure product which was further
purified by preparation TLC using 3% MeOH: DCM as the developing solvent (2 run) to yield
6.3 mg of the desired product. MS (ESI(+)) m/e 714.4 (M+H)+.



[0190] Cyclopamine 2 (20 mg, 0.049 mmol, 1 eq) was suspended in dry toluene (0.6 mL)
and cyclohexanone (150 uL, 1.47 mmol, 30 eq) followed by aluminum isopropoxide (79 mg,
0.392 mmol, 8 eq) were added. The resulting mixture was heated to reflux for 2 h, cooled to rt,
diluted with AcOEt and quenched with Rochelle's salt solution. The biphasic mixture was
stirred overnight, the layers were separated, the aqueous extracted with AcOEt and the combined
organic extracts dried (MgS04), filtered and concentrated in vacuo. The residue was purified by
flash chromatography (DCM, DCM/MeOH 98:2 and 95:5). The target was obtained as a white
crystalline solid (70% yield).

[0191] Diiodomefhane (40 U.L, 0.5 mmol, 25 eq) in DCM (0.52 mL) at 0 °C was treated with
15% diethylzinc in toluene (0.2 mL, 0.2 mmol, 10 eq) and the resulting solution was stirred for 5
min. Compound 12 (10 mg, 0.02 mmol, 1 eq) in DCM (0.35 mL) was added and the resulting
mixture stirred at rt (ice bath removed) for 3h, quenched with 2 N NaOH and stirred for 10 min,
the layers separated and the aqueous one extracted with DCM (2 x). The organic extracts were
dried (MgS04), filtered and concentrated in vacuo. The residue was purified by flash
chromatography (DCM/MeOH 92:8). The cyclopropanated material was obtained as a white
solid. MS (ESI(+)) m/e 424.5 (M+H)+.


[0192] To a solution of cyclopaniine 2 (250 nig, 0.6 mmol, 1 eq) in DCM (10 mL) at rt was
added Fmoc-OSu (205 mg, 0.6 mmol, 1 eq), the resulting mixture was stirred at rt overnight and
concentrated in vacuo. The crude Fmoc-cyclopamine was obtained as an off-white foam.

[0193] A solution of crude Fmoc-cyclopamine 3(15 mg, 0.024 mmol, 1 eq) in DCM (0.5
mL) was cooled to -78 °C and treated with sodium hydrogencarbonate (4 mg, 0.047 mmol, 1.96
eq) followed by 77zCPBA (4 mg, 0.024 mmol, 1 eq). The reaction mixture was stirred at -78 °C
for 1 h, diluted with H2O and extracted with DCM (3 x). The organic extracts were washed with
10% NaHC03 and brine, dried (MgSO/j), filtered and concentrated in vacuo. The crude material
was purified by preparative TLC (Hex/AcOEt 1:2) to yield the epoxide as a white foam (70%
yield).


[0194] A solution of compound 14 (11 mg, 0.017 mmol, 1 eq) in DCM (0.5 mL) was treated
at rt with Et2NH (0.5 mL, 4.8 mmol, 282 eq), the resulting solution was stirred at rt overnight
and concentrated in vacuo. The residue was purified by prep TLC (DCM/MeOH 9:1).
Compound 13 was obtained as a white solid (90% yield). MS (ESI(+)) m/e 428.5 (M+H)+.

[0195] Compound 2 (1.30 g, 3.2 mmol, 1 eq) was massed out and charged into the reaction
vessel. Potassium carbonate (0.91 g, 6.6 mmol, 2.1 eq) was massed out and charged into the
reaction vessel followed by dichloroethane (6.0 mL, 16 mmol, 23.8 eq.) and anhydrous DMSO
(5 mL). The reaction was heated to 70 °C for 36 h under a nitrogen atmosphere. The reaction
was cooled to rt, diluted with DCM (15 mL) and washed twice with water (2x15 mL). The
organic layer was dried over sodium sulfate, filtered (DCM rinse as necessary), and concentrated

to dryness to afford a pale yellow solid. Flash chromatography (DCM/EtOAc) affords the target
material as a white crystalline solid.

[0196] Compound 16 (0.111 g, 0.233 mmol, 1 eq) was transferred to the reaction flask,
placed under a nitrogen atmosphere, and dissolved in anhydrous DCM (2 mL).
Chloroiodomethane was added (0.238 mL, 3.27 mmol, 14 eq.) The solution was cooled to -15
°C. Diethyl zinc (1M in heptane, 1.63 mL, 1.63 mmol, 6.5 equivalents) was added dropwise
over 30 minutes carefully controlling the exotherm. The reaction was held between -10 °C and -
14 °C for several hours, until TLC indicated that the starting material had been consumed. The
reaction was then quenched by the careful addition of THF (6 mL) and then aqueous citrate
buffer (pH 4.5,10 mL). The layers were allowed to warm to rt. Saturated sodium sulfate (10
mL). The layers were mixed well, transferred to a seperatory funnel with excess DCM and the
organic layer was collected. The organic layer was washed with aqueous sodium hydroxide (IN,
10 mL), and saturated sodium sulfate (10 mL), dried over sodium sulfate before concentrating to
dryness. The crude material was purified by flash chromatography to yield the desired product in
55% yield.



[0197] To a solution of compound 11 (5 nig, 0.01 mmol, 1 eq) and compound 10 (10 mg,
0.04 nimol, 3 eq) in anhydrous DCM (5 mL) was added solid sodium triacetoxy borobydride (8
mg, 0.04 mmol, 3 eq) and the resulting suspension was stirred at 25 °C for 2 h. The reaction
mixture was quenched with sodium bicarbonate, extracted with DCM (4 x lOmL), the organic
layer were collected and washed with saturated brine (1 x 20 mL), dried over magnesium sulfate
and concentrated under reduced pressure. The crude was purified by PTLC (DCM/MeOH 95:5)
to yield 8 mg of the desired product.

[0198] Cyclopamine 2 (20 mg, 0.049 mmol) was suspended in dry toluene (0.6 mL) and
cyclohexanone (150 uL, 1.47 mmol, 30 eq), followed by aluminum isopropoxide (79 mg, 0.392
mmol, 8 eq), were added. The resulting mixture was heated to reflux for 2 h, cooled to rt, diluted
with ethyl acetate and quenched with Rochelle's salt solution. The biphasic mixture was stirred

overnight, the layers were separated, the aqueous extracted with ethyl acetate and the combined
organic extracts dried (over MgSC>4), filtered and concentrated in vacuo. The residue was
purified by flash chromatography (DCM, DCM/methanol 98:2 and 95:5). The target 12 was
obtained as a white crystalline solid (70% yield).

[0199] Diiodomethane (40 ill, 0.5 mmol, 2.5 eq) in DCM (0.52 mL) at 0 °C was treated with
15% diethylzinc in toluene (0.2 mL, 0.2 mmol 1 eq) and the resulting solution was stirred for 5
min (wherein a white precipitate was observed). The enone 12 (10 mg, 0.02 mmol, 1 eq) in
-DCM (0.35 mL) was added and the resulting mixture stirred at rt (ice bath removed) for 3 h,
quenched with NaOH (2 N) and stirred for 10 min, the layers separated and the aqueous one
extracted with DCM (two times). The organic extracts were dried over MgS04, filtered and
concentrated in vacuo. The residue was purified by flash chromatography (DCM/methanol
92:8). The cyclopropanated material 11 was obtained as a white solid.

[0200] To a solution of cyclopropylenone 11 (10 mg5 24 umol. 1 eq) in DCM (0.5 ml) at 0
°C under argon was added BF3.Et20 (30 uL, 0.24 mmol, 10 eq) and the resulting solution stirred
at 0 °C for 1.5 h, diluted with DCM and quenched with saturated sodium bicarbonate. The
organic phase was washed with sat. sodium bicarbonate and the aqueous layers combined were
extracted with DCM. The combined organic layers were washed with brine, dried over MgSC-4,
filtered and concentrated in vacuo. The residue was purified by preparative TLC
(DCM/methanol 9:1). The target 18 was obtained as a white solid (90% yield). MS (ESI(+))
m/e 424.62 (M+H)+.


[0201] To a solution of cyclopamine 2 (250 mg, 0.6 mmol, 1 eq) in. DCM (10 m_L) at rt was
added Fmoc-OSu (205 mg, 0.6 mmol, 1 eq) and the resulting mixture was stirred at rt overnight.
The resulting solution of crude Fmoc-cyclopamine was then cooled to 0 °C and was treated with
15% diethylzinc in toluene (0.5 mL, 0.6 mmol, 1 eq) and stirred for 30 min (Flask A, yellowish
solution).
[0202] Diiodomethane (0.4 mL, 6 mmol, 10 eq) in DCM (20 mL) at 0 °C was treated with
15% diethylzinc in toluene (3 mL, 3 mmol, 5 eq) and the resulting solution was stirred for 5 min
(Flask B, white precipitate).
[0203] The contents of Flask B were transferred to Flask A via cannula and the resulting
suspension was stirred for 5 h at rt. The reaction was quenched with 1 N hydrochloric acid,
stirred for 10 min (until all white solid re-dissolved) and extracted with DCM (5x). The organic
extracts were dried over MgSC>4, filtered over Celite and concentrated in vacuo. The residue
was purified by flash chromatography (hexanes/ethyl acetate 1:1). The target 11,12-
monocyclopropane 5 was obtained as a 9:1 mixture of diastereoisomers, along with 20% of
diastereomeric bis-cyclopropanated products (80% total recovery). This mixture was separated
using preparative SFC chromatography.


[0204] Fmoc-cyclopropylcyclopamine 3 (14 mg, 22 umol, 1 eq) was dissolved in DCM (0.5
ml), cooled to 0 °C and treated with BF3-Et20 (27 uL, 0.22 mmol, 10 equiv) for lh, quenched
with saturated sodium bicarbonate, the layers separated and the aqueous one extracted with
DCM. The combined organic extracts were dried over MgSO/j, filtered and concentrated in
vacuo. The residue was purified by preparative thin layer chromatography (hexane/ethyl acetate
2:1). The target, Fmoc-expanded cyclopamine, was obtained as a clear oil.
[0205] A solution of crude Fmoc-expanded cyclopamine (20 mg, 31 umol, 1 eq) in DCM
(0.5 ml) was treated with EtaNH (0.5 mL, 4.8 mmol, 154 eq) overnight, concentrated in vacuo
and the residue purified by flash chromatography (DCM, DCM/methanol 98:2 and 95:5). The
desired compound was obtained as an oil, which crystallized upon standing. MS (ESI(+)) m/e
426.29 (M+H)+.


[0206] Compound 6 (23 mg, 54 umol, 1 eq) was dissolved in DCM (1 mL) and methyl
iodide (0.17 mL, 0.54 mmol, 10 eq) was added. The reaction was allowed to stir at rt under a
nitrogen atmosphere overnight The next morning TLC/LC-MS indicated that there was still
some SM. A spatula of Na2CC>3 was added and the mixture was stirred for another h. The crude
material was loaded onto Biotage 25 Si+M and eluted with DCM/EtOAc/MeOH (82.5/10/7.5).
Amorphous material obtained: 16 mg. MS (ESI(+)) m/e 440.32 (M+H)+.

[0207] Hydrocinnamoyl chloride 22 (1.13 g, 6.7 mmol, 1 eq) and allyl amine (0.77 mL, 10
mmol, 1.5 eq) were solubilized in THF (20 mL) and the reaction was stirred at rt for 24 h. A
white precipitate formed. The reaction mixture was filtered. The filtrate was dried over MgSC*4,
filtered and concentrated under vacuum. Colorless oil that turned into a waxy solid (1.1 g) was
isolated.
[0208] To a solution of the allyl amide (0.81 mg, 0.27 mmol, 1 eq) hi a mixture of
acetone:water (9 mL; 3:1) at 0 °C was added a solution of OsO (0.55 mL, 2.5 w/w in /-BuOH)
and the resulting brownish mixture was stirred for 10 min. Solid sodium periodate (0.13 g, 0.59
mmol, 2.2 eq) was added in three portions and the mixture was stirred at 0 °C and allowed to
warm to 25 °C over a period of 2 h. The light off white creamy mixture was diluted with DCM
(25 mL), dried with magnesium sulfate, the solids were filtered off through a pad of celite, the
filtrate was concentrated under reduced pressure. The crude slowly develops a yellow black

color. The crude material was loaded onto Biotage 25+S and purified eluting with
hexane/EtOAc (1:1 to 1:2) to obtain a colorless oil, which solidified once dried (250 mg).

[0209] To a solution of 18 (108 mg, 0.25 mmol, 1 eq) and the aldehyde 21 (100 mg, 0.52
nnnol, 2.1 eq) in DCM (5 mL) was added sodium triacetoxyborohydride (100 mg, 0.47 mmol,
1.9 eq) in one portion and the slurry was stirred at rt for 7 h. The reaction was quenched by
adding MeOH and filtering through celite. Evaporation to dryness yield 230 mg of oil. Material
was purified by chromatography (SiO?, column 3 cm X 4 cm) eluting with hexane/EtOAc (4:6
to 2:8) to yield 38 mg of the desired product. MS (ESI(+)) m/e 599.74 (M+H)+.

[0210] 2-phenylethanesulfonyl chloride 25 (1.13 g, 5.5 mmol, 1 eq) and allyl amine (0.56
mL, 7.3 mmol, 1.3 eq) were solubilized in THF (20 mL) and allow to react overnight at rt for 24
h. A white precipitate formed. The reaction mixture was filtered. The filtrate was dried over
MgSC>4, filtered and concentrated under vacuum. Slightly yellow oil (1.1 g) was isolated. The
crude material Avas used directly in the next step.

[0211] To a solution of the allyl sulfonamide (0.15 g, 0.66 mmol, 1 eq) in acetone:water (4
mL, 3:1) at 0 °C was added a solution of Os04 (0.13 mL, 2.5 w/w in M3uOH) and the resulting
brownish mixture was stirred for 10 min. Solid sodium periodate (0.31 g, 1.46 mmol, 2.2 eq)
was added in three portions and the mixture was stirred at 0 °C and allowed to warm to 25 °C
over a period of 2 h. The light off white creamy mixture was diluted with DCM (25 mL), dried
with magnesium sulfate, the solids were filtered off through a pad of celite, the filtrate was
concentrated under reduced pressure. The crude material was purified on Si02 (column 2 cm X
12 cm) eluting with hexane/EtOAc (7:3) to give the desired material (16mg).

[0212] To a solution of 18 (15 mg 35.4 umol, 1 eq) and the aldehyde 26 (16 mg, 70 umol, 2
eq) in DCM (3 mL) was added sodium triacetoxyborohydride (20 mg, 94 umol, 2.6 eq) in one
portion at rt. After 24 h the reaction was quenched by adding a few drops of MeOH and filtered
on celite. Crude was purified by prep TLC 1mm (First elution: Toluene/Acetone (9:1), second
elution: Tolune/Acetone (4:1)) to yield 4 mg of a colorless oil. MS (ESI(+)) m/e 635.43 (M+H)+.



[0213] Compound 2 (1.30 g, 3.2 mmol, 1 eq) was massed out and charged into the reaction
vessel. Potassium carbonate (0.91 g, 6.6 mmol, 2.1 eq) was massed out and charged into the
reaction vessel followed by dichloroethane (6.0 mL, 76 mmol, 23.8 eq.) and anhydrous DMSO
(5 mL). The reaction was heated to 70 °C for 36 hours under a nitrogen atmosphere. The
reaction was cooled to rt, diluted with DCM (15 mL) and washed twice with water (2x15 mL).
The organic layer was dried over sodium sulfate, filtered (DCM rinse as necessary), and
concentrated to dryness to afford a pale yellow solid. Flash chromatography (DCM/EtOAc)
affords the target material as a white crystalline solid.

[0214] Compound 16 (0.111 g, 0.233 mmol, 1 eq) was transferred to the reaction flask,
placed under a nitrogen atmosphere, and dissolved in anhydrous DCM (2 mL).
Chloroiodomethane was added (0.238 mL, 3.27 mmol, 14 eq.) The solution was cooled to -15
°C. Diethyl zinc (1M in heptane, 1.63 mL, 1.63 mmol, 6.5 equivalents) was added dropwise
over 30 minutes carefully controlling the exotherm. The reaction was held between -10 °C and -
14 °C for several hours, until TLC indicated that the starting material had been consumed. The
reaction was then quenched by the careful addition of THF (6 mL) and then aqueous citrate
buffer (pH 4.5,10 mL). The layers were allowed to warm to rt. saturated sodium sulfate (10
mL). The layers were mixed well, transferred to a seperatory funnel with excess DCM and the

organic layer was collected. The organic layer was washed with aqueous sodium hydroxide (1M,
10 mL), and saturated sodium sulfate (10 mL), dried over sodium sulfate before concentrating to
dryness. The crude material was purified by flash chromatography to yield the desired product in
55% yield.

[0215] Compound 15 (1.25 g, 2.56 mmol, 1 eq) was dissolved in DCM (22 mL) under a
nitrogen atmosphere and the solution was cooled to 0.9 °C internal temperature. Neat BF3-OEt2
(1.6 mL, 12.8 mmol, 5 eq) was added in portions over several hours while monitoring the
reaction by LCMS. The reaction was allowed the reaction to slowly warm to 10 °C until
complete. The reaction was quenched the reaction with MeOH (5 mL) at 0 °C, diluted with
KOH (2 M, 30 mL) and stirred at rt for 2 hours. The layers were separated and the organic layer
was washed with water, dried over of Na2SC>4, filtered and concentrated to dryness.
Chromatography with DCM/EtOAc afforded the desired product.



[0216] Compound 27 (29 mg, 60 |i.mol, 1 equiv) was placed into a 5 mL round bottom flask.
Butanone (2 mL) and Al(OjPr)3 (12.3 mg, 60 umol, 1 equiv) were added. The contents of the
round bottom were heated at reflux under argon for 7 h. The reaction mixture was then stirred at
rt for 10 h. The reaction mixture was then quenched with a solution (2 mL) formed by mixing
citric acid (500 g), NaOH (15.7 g) and water (500 mL). The resulting mixture was stirred rapidly
until the emulsion dissipated. The mixture was then extracted with EtOAc (3X10 mL). The
organic layers were collected, dried over Na2S04 and concentrated. The crude material was
purified by column chromatography. MS (ESI(+)) m/e 486.26 (M+H)+.


[0217] Compound 28 (25 mg, 0.051 mmol, 1 eq) was dissolved in anhydrous 2-
methoxyethanol (1 mL, 12.7 mmol, 234 eq). Potassium carbonate (7.1 mg, 0.051 mmol, 1 eq)
was added and the reaction was heated to 120 °C. The reaction was monitored by TLC. "When
TLC indicated that the reaction had stopped the reaction was cooled to rt. The reaction was then
diluted with ethyl acetate and washed with water. The organic layer was dried over sodium
sulfate and concentrated to dryness. Chromatography with DCM/EtOAc afforded the desired
product. MS (ESI(+)) m/e 526.66 (M+H)+.

[0218] To a solution of hydro cinnamic acid 5 (3.01 g, 20 mmol, 1 eq) in 30 mL anhydrous
chloroform at 75 °C was added thionyl chloride (1.75 mL, 24.1 mmol, 1.2 eq) dropwise over a
period of 3 min. The mixture was refluxed for 3.5 h. The solvent was distilled off to give the
crude acid chloride as a light yellow viscous liquid. The crude was used without further
purification.


[0219] To a biphasic mixture of 7 (3.16 g, 24.1 mmol, 1.2 eq) in DCM (30 mL) and an
aqueous solution of NaOH (2.0 M, 30 mL, 3 eq) at 25 °C was added a solution of the acid
chloride 6 (3.38 g, 20 mmol, 1 eq) in DCM (10 mL) and the resulting mixture was stirred at 25
°C for 3 h. The mixture was then neutralized with aqueous HC1 (2 M, 30 mL). The organic layer
was then separated and the aqueous layer was extracted with DCM (3 x 50 mL). The combined
organic layers were washed with HC1 (2.0 M, 25 mL), water (3 x 50 mL), saturated brine (50
mL), dried over magnesium sulfate and the solvent was evaporated under reduced pressure. The
crude was chromato graphed on silica gel using 5% MeOH:DCM as eluant and the column was
then eluted with 10% MeOH: DCM to yield 1.141 g of compound 8.

[0220] To a mixture of the acid 8 (264 mg, 1 mmol, 1 eq), EDCI (231 mg, 1.2 mmol, 1.2
eq), and triethyl amine (168 u,L 1.2 mmo, 1.2 eq) in DCM (2 mL) at 0 °C was added allylamine
(90.3 ]xL, 1.2 mmol, 1.2 eq), and the resulting mixture was stirred at 0 °C for 1 h and allowed to
warm to 25 °C over a period of 2 h. The reaction mixture was added to water (50 mL), extracted
with DCM (4 x 25 mL), the combined organic layers were washed with 1 M HC1 (2 x 25 mL),
water (3 x 25 mL), satd brine (25 mL), dried over magnesium sulfate and the solvent was
evaporated off under reduced pressure to yield 287.5 mg of the desired product. This material
was used without further purification.

[0221] To a solution of the allyl amide 9 (70 mg, 0.23 mmol, 1 eq) in 1 acetone (mL) and
water (0.3 mL) was added a solution of osmium tetroxide (0.35 mL, 0.035 mmol, 2.5 w/w in t-
butanol) and the reaction mixture was immediately cooled in an ice bath after the OSO4 solution
was added. The resulting dark brown solution was stirred at 0 °C for 15 min. Sodium periodate
(110 mg, 0.51 mmol, 2.2 eq) was added in 5 portions to the above mixture and stirring continued
for 1 h at 0 °C and allowed to warm to 25 °C over a period of 2 h. The reaction mixture was
diluted with DCM (3 mL), filtered through a short plug of magnesium sulfate and the filter cake

was washed with DCM (several times). The filtrate was concentrated and the residue (67.9 mg)
was filtered through a short plug of RP silica gel using 5% MeOH: DCM as eluant to yield 38.9
mg of the desired product.

[0222] To a solution of 19 (0.0242 g, 0.0569 mmol, 1 eq), and the aldehyde 10 (0.0346 g,
0.114 mmol) in 3.0 mL DCM at 23 °C was added sodium triacetoxy borohydride (24.1 mg,
0.114 mmol, 2 eq) in one portion and the resulting mixture was stirred for 16 h. After complete
conversion of stating material into desired product as evident from LCMS and TLC, the mixture
was taken up in 2.5 mL methanol and purified by Reverse Phase preparative HPLC
(Acetonitrile-20mM ammonium carbonater buffer, basic method). The fractions were
concentrated, and were taken up in minimum volume of acetonitrile, the solution was frozen and
lyophilized to give 0.007 g (0.0098 mmol, 17%) as a white solid. MS (ESI(+)) m/e 714.6
(M+H)+.



[0223] To a solution of 18 (35 mg, 0.08 mmol, 1 eq) and aldehyde 32 (34 mg, 0.17 mmol,
2.0 equiv) in THF (2.0 mL) was added sodium triacetoxyborohydride (35 mg, 0.17 mmol, 2.0
equiv) in one portion. The solution was allowed to stir at 23 "C for 12h. The mixture was then
concentrated and purified by silica gel chromatography using a gradient of 1:1 hexanes:ethyl
acetate followed by 1:2, 1:4 and straight ethyl acetate. Some material was still eluting so the
column was then flushed with 9:1 ethyl acetate:methanol. The desired product coeluted with
some aldehyde so the material was then purified by preparative HPLC. (Basic method 50_100)
The desired fractions were frozen and lyophilized to yield oily residue (12 mg, 0.02 mmol, 24%
yield). MS (ESI(+)) m/e 614.44 (M+H)+.

[0224] To a solution of 18 (8.0 mg, 0.02 mmol, 1 eq) and aldehyde 34 (6.0 mg, 0.04 mmol,
2.0 eq) in CHoCl2 (1.0 mL) was added sodium triacetoxyborohydride (8.0 mg, 0.17 mmol, 2.0

eq) in one portion. The solution was allowed to stir at 23 °C for 12 h. The mixture was then
concentrated and purified by silica gel chromatography using a gradient of 1:1 hexanes: ethyl
acetate followed by 1:2, and 1:4 to isolate the desired product coeluting with some aldehyde.
The material was then purified by preparative HPLC. The desired fractions were frozen and
lyophilized to yield white powder (4.9 mg, 0.009 mmol, 46% yield). MS (ESI(+)) m/e 570.41
(M+H)+.

[0225] To a solution of 18 (6.0 mg, 0.01 mmol, 1 eq) and benzaldehyde 36 (3.0 mg, 0.02
mmol, 2.0 eq) in CH2CI2 (0.5 mL) was added sodium triacetoxyborohydride (6.0 mg, 0.02
mmol, 2.0 eq) in one portion. The solution was allowed to stir at 23 °C for 12 h. The mixture
was then concentrated and purified by silica gel chromatography using a gradient of 4:1
hexanes:ethyl acetate followed by 1:1 to isolate the desired product coeluting with some
aldehyde. The material was then purified by preparative HPLC. The desired fractions were
frozen and lyophilized to yield white powder ( 0.6 mg, 0.001 mmol, 8% yield).


[0226] To a solution of 18 (6.0 mg, 0.01 mmol, 1 eq) and 4-phenoxybenzaldehyde 38 (6.0
mg, 0.02 mmol, 2.0 eq) in CH2CI2 (0.5 mL) was added sodium triacetoxyborohydride (6.0 mg,
0.02 mmol, 2.0 eq) in one portion. The solution was allowed to stir at 23 °C for 12 h. The
mixture was then concentrated and purified by silica gel chromatography using a gradient of 4:1
hexanes: ethyl acetate followed by 1:1 to isolate the desired product coeluting with some
aldehyde. The material was then purified by preparative HPLC. The desired fractions were
frozen and lyophilized to yield white powder (1.8 mg, 0.003 mmol, 21% yield). MS (ESI(+))
m/e 606.4 (M+H)+.



[0227] To a mixture of 18 (40 mg, 0.09 mmol, 1 eq) and sodium bicarbonate (15 mg, 0.18
mmol, 2.0 eq) in CH2C12 (0.5 mL) was added bromoethanol 40 (33 uL, 0.47 mmol, 5.0 eq). The
solution was heated to reflux for 4 h. The mixture was then concentrated and purified by silica
gel chromatography using a gradient of DCM followed by 38:1:1 dichlormethane:ethyl
acetate:methanol, then 36:3:1, then 17:2:1 to isolate the desired product as an oil (12 mg, 0.026
mmol, 27% yield). MS (ESI(+)) m/e 468.24 (M+H)+.

10228] To a solution of 18 (100 mg, 0.24 mmol, 1 eq) and aldehyde 42 (42 mg, 0.35 mmol,
1.5 eq) in CH2CI2 (2.5 mL) was added sodium triacetoxyborohydride (100 mg, 0.47 mmol, 2.0
eq) in one portion. The solution was allowed to stir at 23 °C for 12h and shows only 50%
conversion by LCMS. To the mixture was added an additional equivalent of aldehyde 36 (26

mg, 0.24 mmol, 1.0 eq) and sodium triacetoxyborohydride (48 mg, 0.24 mmol, 1.0 eq) and was
allowed to stir for 2h. The mixture was then concentrated and purified by silica gel
chromatography using a gradient of 1:1 hexanes:ethyl acetate followed by 1:2, and 1:4 to isolate
the desired product coeluting with some aldehyde. The material was then purified by
preparative HPLC. The desired fractions were frozen and lyophilized to yield white powder (53
mg, 0.10 mmol, 43% yield). MS (ESI(+)) m/e 526.66 (M+H)+.

[0229] To a solution of 18 (15 mg, 0.04 mmol, 1 eq) and aldehyde 44 (6.9 mg, 0.04 mmol,
1.0 eq) in CH2CI2 (0.6 mL) was added sodium triacetoxyborohydride (15 mg, 0.07 mmol, 2.0
eq) in one portion. The solution was allowed to stir at 23 °C for 12h and shows only 50%
conversion by LCMS. To the mixture was added an additional equivalent of aldehyde 44 (6.9
mg, 0.04 mmol, 1.0 eq) and sodium triacetoxyborohydride (7.5 mg, 0.04 mmol, 1.0 eq) and was
allowed to stir for 12 h. The mixture was then concentrated and purified by silica gel
chromatography using a gradient of 1:1 hexanes:ethyl acetate followed by 1:2, and 1:4 to isolate
the desired product as an oil (12 mg, 0.19 mmol, 54% yield). MS (ESI(+)) m/e 635.43 (M+H)+.


Part A
[0230] To a mixture of 18 (12 mg, 0.03 mmol, 1 eq) and potassium carbonate (40 mg, 0.28
mmol, 10 eq) in DMF (0.5 mL) was added 2-(dimetliylamino)ethyl chloride hydrochloride 46
(20 mg, 0.14 mmol, 5.0 eq). The solution was stirred for 2h at 23 °C and no reaction took place.
The solution was then heated at 65 °C for 12 h, quenched with water (2 mL) and then extracted
with diethyl ether (2x10 mL). The combined organic solutions were washed with brine and
dried with MgSC>4. The mixture was then concentrated and purified by preparative HPLC. The
desired fractions were frozen and lyophilized to yield white powder (17, 1.8 mg, 0.004 mmol,
13% yield). MS (ESI(+)) m/e 495.71 (M+H)+.



[0231] To a solution of 18 (100 mg, 0.24 mmol, 1 eq) and chloroacetamide 48 (250 mg, 1.2
mmol, 5.0 eq) in CH2CI2 (1.0 raL) was added triethylamine (160 uLs 1.2 mmol, 5.0 eq). The
solution was heated to reflux and stirred for 72 h. The mixture was then concentrated and
purified by silica gel chromatography using a gradient of 4:1 hexanes:ethyl acetate followed by
2:1,1:1 and 1:2 to isolate the desired product as a mixture of two spots. The same column
conditions were repeated and the desired product was isolated as an oil (17 mg, 0.14 mmol, 12%
yield).

[0232] Compound 18 (103 mg, 0.24 mmol, 1 equiv) was dissolved in DCM (3.0 mL) and
cooled to -78 °C. To this solution was added mCPBA (77% wt, 54 mg, 0.24 mmol, 1.0 equiv)
and then the solution was allowed to warm to 22 °C over 12 h. The reaction has gone to 50%
conversion (LCMS). The solution was quenched with sodium bicarbonate and extracted with

DCM. The combined organics were dried with magnesium sulfate, filtered and concentrated.
The material was then purified by silica gel chromatography using a gradient of
DCM:EtOAc:MeOH of 95:2.5:2.5 then 92.5:5.0:2.5 then 85:10:5 to isolate desired product
coeluting with a small amount of something else. The combined fractions were concentrated
and purified by prep HPLC to yield 3.4 mg of the desired product. MS (ESI(+)) m/e 440.63
(M+H)+.
Example 26
Inhibition of the Hedgehog pathway in cell culture using analogs of cyclopamine
[0233] Hedgehog pathway specific cancer cell killing effects may be ascertained using the
following assay. C3H10T1/2 cells differentiate into osteoblasts when contacted with the sonic
hedgehog peptide (Shh-N). Upon differentiation; these osteoblasts produce high levels of
alkaline phosphatase (AP) which can be measured in an enzymatic assay (Nakamura et ah, 1997
BBRC 237: 465). Compounds that block the differentiation of C3H10T1/2 into osteoblasts (a
Shh dependent event) can therefore be identified by a reduction in AP production (van der Horst
et al., 2003 Bone 33: 899). The assay details are described below. The results approximate
(EC50 for inhibition) of the differentiation assay is shown below in Table 1.
Assay Protocol
Cell Culture
[0234] Mouse embryonic mesoderm fibroblasts C3H10T1/2 cells (obtained from ATCC)
were cultured in Basal MEM Media (Gibco/Invitrogen) supplemented with 10% heat inactivated
FBS (Hyclone), 50 units/ml penicillin and 50ug/ml streptomycin (Gibco/Invitrogen) at 37C with
5% C02 in air atmosphere.
Alkaline Phosphatase Assay
[0235] C3H10T1/2 cells were plated in 96 wells with a density of 8xl03 cells/well. Cells
were grown to confluence (72hrs). After sonic Hedgehog (250ng/ml), (R&D Systems) and/or
compound treatment, the cells were lysed in 1 lOul of lysis buffer (50mM Tris pH 7.4, 0.1%
TritonXlOO), plates were sonicated and lysates spun through 0.2um PVDF plates (Corning). 40
ul of lysates was assayed for AP activity in alkaline buffer solution (Sigma) containing lmg/ml
p-Nitrophenyl Phosphate. After incubating for 30 min at 37C, the plates were read on an
Envision plate reader at 405 nm. Total protein was quantified with a BCA protein assay kit from
Pierce according to manufacturer's instructions. AP activity was normalized against total

protein. Note that "A" indicates that the IC50 is less than 200 nM, "B" indicates that the IC50 is
200-500 nM, "C" indicates that the IC50 is > 500 nM.

Example 27
Preparative Supercritical Fluid Chromatographic (SFC) Purification Method
[0236] Described is a preparative supercritical fluid chromatography method for purification
of compounds of the present invention.

Hardware Used:
SFC: Berger PrepSFC System
Ultra-Violet Detector: Knauer Model K-2501
Column: Berger 5 micron Silica, 20 mm by 250 mm
SFC conditions:
Mobile phases: C02 - 95%; Methanol - 5%
Flow rate: 50.00 mL/minute
Column Temperature: 35 C
Isocratic for 40 minutes at 5% methanol in supercritical C02
Injection volume: 1000 uL
Sample concentrations are normally run at 5.0 mg/mL
Sample Preparation: Samples are dissolved in 20% DCM/S0% methanol
Products elute between 25 and 40 minutes
Ultra-Violet Detector Parameters
Wavelength = 210 nm; and Resolution = 1.0 ran
Example 28
Liquid Chromatography Mass Spectrometry (XCMS) Method
[0237] Described is a liquid chromatography mass spectrometry method for the compounds
of the present invention.

f A1 Inlet Method Report
VJaters alliance 2795 LC Mobile Phase
Solvents
A.% - 0.0
E% 10.0 Acetonitrile
C% 90.0 Water20mM NH4HC03
D% 0.0 WaterO.1A
Flow Ramp 1.00
Flow (ml/min) 1.500
Stop Time (mins) 4.00
Min Pressure (Bar) 0
Max Pressure (Bar) 300
Degasser On
Stroke Volume 100.0 Ml
Waters alliance 2795 LC Column
Column Position Column 3
Equilibration Time (mins) 0.00
Column Temperature (°C) 3 5
Column Temperature Limit (°C) 5
Waters Alliance 27 95 LC Rapid E System Path Off
System Flow (ml/min) 0.00
System Time (mins) 0.00
Re-equilibration Time (mins) 0.00
Pre column volume (fil) 0.00
Waters Alliance 2795 I/O
Switch 1 No Change
Switch 2 No Changs
Switch 3 No Change
Switch 4 No Change
Analog Output Setting Flow Rate
Waters alliance 2795 LC Gradient Timetable
The gradient Timetable contains 5 entries which are :
Time A% B% C% D% Flow Curve
0.00 0.0 10.0 90.0 0.0 1.500 1
3.00 0.0 85.0 15.0 0.0 1.500 6
3..-0 0.0 100.0 0.0 0.0 1.500 6
3.50 0.0 100.0 0.0 0.0 1.500 6
3.60 0.0 10.0 90.0 0.0 1.500 6
Waters Alliance 2795 LC External Event Timetable
No Entries in the Pump External Event Timetable.
Waters alliance 2795 Injection Parameters
Inject Type Sequential
Fill Mode Partial Loop
Pre-sample Air Boundary (;zl) 4.0
Post-sample Air Boundary (yl) 4.0
Pre-load time (mins) 0.00
Waters Alliance 2795 Autosampler Parameters
Sample Temperature (°C) 20
Sample Temperature Limit (°C) 20
Draw Depth (mm) 0
Draw Speed Normal
Seek Well Bottom False
Check Plate Height False

Waters Alliance 2795 Wash Parameters
Wash Frequency Inject
Flush Time (s) 3
Wash Time (s) 10
Wash Cycles 2
Secondary Wash Volume (/il) 600.0
Wash Sequence
Waters996 PDA
Start Wavelength (nm) 220.00
End Wavelength (nm) 400.00
Resolution (nm) 1.2
Sampling Rate (spectra/s) 1.000
Filter Response 1
Exposure Tiiae(ms) Automatic
Interpolate 656 Yes
Acquisition stop time (mins) 4.00
Save to disk: Yes
Waters996 PDA Analog Channel 1
Output Mode Off
Waters99S PDA Analog channel 2
Output Mode Off
End Of Report
TBI Experiment Report
Name Default Experiment
Creation Time Fri 04 Jun 2004 10:25:33
Instrument Identifier
Version Number 1.0
Duration (min) 4.0
Calibration Filename C:\MassLynx\lnfinity_2002.PRO\ACQUDB\NAlCSJ340408.cal
Solvent Delay Divert Valve Enabled 0
Number Of Functions 1
Function 1 : MS Scan, Time 0.00 to 3.50, Mass 200.00 to 1000.00 ES+
Type MS Scan
Ion Mode ES+
Data Format Centroid
Parameter File C:\Masslynx\lnfinity_2002.PRO\ACQUDB\default.ipr
Start Mass 200.0
End Mass 1000.0
Scan Time (sec) 1.0
InterScan Time (sec) 0.2
Start Time (min) 0.0
End Time (min) 3.5

[CI ZQ Tune Parameters
Source (ES+) Settings Readbacks
Capillary (kV) 3.20 3.27
Cone(V) 35.00 37.24
Extractor (V) 3.00 2.81
RF Lens (V) 0.0 0.0
Source Temperature (°C) 130 129
Desolvatiori Temperature (°C) 350 350
Cone Gas Flow (L/Hr) 20 33
Desolvation Gas Flow (L/Hr) 450 466
Analyser Settings Readbacks
LM 1 Resolution 15.0
HM 1 Resolution 15.0
Ion Energy 1 0.5
Multiplier (V) 550 -547
Pressure Gauges
Pirani Pressure(mbar) MUX Configuration
Probe Standard
Incorporation by Reference
[0238] All of the U.S. patents and U.S. published patent applications cited herein are hereby
incorporated by reference.
Equivalents
[0239] Those skilled in the art will recognize, or be able to ascertain using no more than
routine experimentation, many equivalents to the specific embodiments of the invention
described herein. Such equivalents are intended to be encompassed by the following claims.

WE CLAIM:
1. A compound of Formula 1:

or a pharmaceutically acceptable salt thereof;
wherein each R1 and R8 is independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloaikyl, aralkyl, heteroaryl, heteroaralkyl, halide, sulfhydryl, alkylthio, arylthio,
aralkylthio, hydroxyl, alkoxyl, aryloxy, acyloxy, amino, alkylamino, arylamino, acylamiao,
aralkylamino, nitro, acylthio, carboxamide, sulfonamide, sulfate, -OF(L)(OR20)25 -X-C(L)-R21 or
-X-C(L)-X-R21;
wherein R1 may also be a sugar;
each X is independently O or NR wherein R is H, alkyl, alkenyl, alkynyl, aryl cycloalkyl or
aralkyl;
L is 0 or S;
R2 and R9 are independently H,alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloaikyl,
nitrile, aralkyl, alkoxyl, aryloxy; acyloxy,- carboxyl, halide, sulfhydryl, alkylthio, arylthio,
aralkylthio, hydroxyl, amino, alkylamino, arylamino, acylamino, aralkylarnino, heteroaryl, or
heteroaralkyl;
R5 is II, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloaikyl, aralkyl, alkoxyl, aryloxy,
acyloxy, halide, hydroxy!, amino, alkylamino, arylamino, acylamino, aralkylarnino, alkylseleno,
aralkylseleno, arylseleno, alkylthio, aralkylthio, arylthio, heteroaryl, or heteroaralkyl;
t
each R3, R4, R6, R7, R13 and R14 is independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
heterocycloaikyl, aralkyl, alkoxyl, aryloxy, acyloxy, halide, hydroxyl, amino, alkylamino,
arylamino, acylamino, aralkylarnino, heteroaryl, or heteroaralkyl;

or R1 and R2 taken together along with the carbon to which they are bonded, form -(C=0)-.
(OS)-, -(ONCOR.20))-, membered ring containing up to two heteroatoms selected fromN, 0, and S;
or R8 and R9 taken together, along with the carbon to which they are bonded, form—
(C=0>, -(C=S>, -^NCOR20))-, -^NCR20))-, -(ON(rTCR20)(R20))), or form an optionally
substituted 3-8 membered ring containing up to two heteroatoms selected from N, O, and S;
or R* and R5 taken together form a double bond or form a group represented by lb

wherein Z is NR21, O, or CCR23)^23);
or Rs and Rfi taken together form a double bond or form a group represented by lb

wherein Z is M.21,O, or CCR23)^23);
R10 and Ru taken together form a double bond or form a group represented by lb

wherein Z is NR21,0, or CCR23)^23);
R12 is H, alkyl alkenyl alkynyl, aryl, cycloalkyl, heterocycloalkyl, hydroxyl, aralkyl,
heteroaryl heteroaralkyl, haloalkyl, alkoxyl -C(0)R21, -COzR21, -SO2R21, -C(0)N(R21)(R21),
-EC(R2I)2]q-R2Is -[(W>N(R.a)C(0)]^.« -[(W)-C(0)]qR21, -[(^-CCOO^R21, -[(W)-OC(0)]aR213
-[(W)-S02]^21J -[(W)-N(R2I)S023^.21, -[(WyC^NCR21)]^21, -[(W)-0]^.2Is -[(W)-^21)]^21, or
-[(W)-S]^;
wherein each W is independently a diradical, and q is 1,2,3,4,5, or 6;
R15, Rxs, and R" are independently H, alkoxyl aryloxy, acyloxy, halide, hydroxyl, amino,
alkylamino, arylamino, acylarnmo, aralkylarm'Tio; or R15 and R16 taken together, along with the
carbon to which they are bonded, form -C(0)- or -C(S)-;
R18 and Rware independently H, alkyl, araalkyl halide, amido, or ester;

eachR20 is independently H, alkyl, aLkenyl, aikynyl, aryl, cycloalkyl, heterocycloalkyl,
aralkyl, heteroaryl, or heteroaralkyl; or any two occurrences of R20 on the same substituent can be
taken together to form a 4-8 membered optionally substituted ring;
eachR21 is independently H, alkyl, alkenyl, aikynyl, aryl, cycloalkyl, heterocycloalkyl,
aralkyl, heteroaryl, heteroaralkyl or -[C(R.za)2] p-R25 wherein p is 0-5; or any two occurrences of R21 •
on the same substituent can be taken together to form a 4-8 membered optionally substituted ring
which contains 0-3 heteroatoms selected firomN, 0, S, and P;
each R23 is independently H, alkyl, alkenyl, aikynyl, aryl, cycloalkyl, heterocycloalkyl,
aralkyl, heteroaryl, heteroaralkyl halide, alkoxyl, aryloxy, acyloxy, silyloxy, nitrile, -C(0)R21,
-COiR21,-S02R21, and-C(0)NCR21)2;
each R25 is independently H, hydroxyl, acylaroino, -NCR^COR20, -NCR^C^OR20,
-NCEL^SOzCR20), -COR^NCR2^, -OC^R^CR.20)^20), -SO2N(R20)CR20), -NCR20)^20), -COOR20,
-C(0)N(OH)CR2t), -OS^OR20, -SCO^OR20, -OPCLXOR^COR20), -NP(0)(OR2fl)(OR2D), or -P(0)
(OR^COR20).
2. The compound as claimed in claim 1, wherein RB, R14, R15, R16, and R17 are
hydrogen.
3. The compound as claimed in claim 1, wherein R1 is hydroxyl, sugar, -OP^COR20)^
-X-C(L)-R.n, or -X-C(L)-X-Kn; or R1 and R2 taken together, along with the carbon to which they are
bonded, form -C(O)-.
4. The compound as claimed in claim 1, wherein R4 andR5 taken together form a
double bond.
5. The compound as claimed in claim 4, wherein R1 and R2 taken together, along with
the carbon to which they are bonded, form -C(0)-.
6: The compound as claimed in claim 1, wherein R1 is hydroxyl and R2 is H.

7. The compound as claimed in claim 6, wherein Rs and R6 taken together form a
double bond; or Rs and R6 taken together form a group represented by lb;

wherein:
ZisCCR23)^23).
8. The compound as claimed in claim 1, wherein R10 and R11 taken together form a
double bond; or R1D and Ru taken together form a group represented by lb;

wherein:
ZisQR^XR23).
9. The compound as claimed in claim 1, wherein R5 and Rs taken together form a
double bond and Rw and R11 taken together form a double bond.
10. The compound as claimed in claim 5, wherein R10 and R11 taken together form a
double bond; or R10 and R11 taken together form a group represented by lb;

wherein:
ZisCCR^CR23).
11. The compound as claimed in claim 6, wherein R10 and R11 taken together form a
double bond; or R10 and R11 taken together form a group represented by lb;

wherein:
ZisCCR23)^23).

12. The compound as claimed in claim 1, wherein R8 and R9 are hydrogen; or Rs and R9
taken together, along with the carbon to which they are bonded, is -C(0)-.
13. The compound as claimed in claim 1, wherein R12 is H, alkyl, cycloalkyl, aralkyl,
heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R21)C(0)]qR21,
-[(W)-N(R21)S02]qR21,-[(W)-C(0)N(R21)]qR215 -TO-O^R21, -[(W)-C(0)]qR21, or-[(W)-C(0)OJqR21.
14. The compound as claimed in claim 2, wherein R12 is H, alkyl, cycloalkyl, aralkyl,.
heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R21)C(0)]qR21,
-[(W)-N(R21)S02]qR21, -[(W-C^NCR21)]^21, -[(W)-0]qR21, -[(W)-C(0)]qR21, or -[(W)-C(0)0]qR21.
15. The compound as claimed in claim 5, wherein R12 is H, alkyl, cycloalkyl, aralkyl,
heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R21)C(0)]qR21,
-[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R21)]qR21, -[(W)-0]qR21, -[(W)-C(0)]qR21, or-[(W)-C(0)0]qR21.
16. The compound as claimed in claim 6, wherein R12 is H, alkyl, cycloalkyl, aralkyl,
heteroaryl, heteroaralkyl, haloalkyl, hydroxyl, alkoxyl, -[(W)-N(R21)C(0)]qR21,
-[(W)-N(R21)S02]qR21, -[(W)-C(0)N(R21)]qR21, -[(W)-0]qR21, -[(W)-C(0)]qR21, or
17. A compound as claimed in claim 1 of the formula:

wherein:
R12 is H, alkyl, aryl, cycloalkyl, heterocycloalkyl, hydroxyl, aralkyl, heteroaryl,
heteroaralkyl, haloalkyl, alkoxyl, -C(0)R2\ -COzR21, -SO2R21, -C(0)N(R21)(R21),
-[C(R21)2]P-R21, -[(W)-N(R21)C(0)]qR21, -[(W)-C(0)]qR21, -[(W)-C(0)0]qR21,
-[(W>OC(0)]qR21, -[(^-SO^R21, -[(W)-N(R21)Sa]qR21, -[(^-CCONCR21)]^21,
-[(W)-0]qR21, -[(W)-N(R21)]qR21, or -[(W>S],Ra;

wherein each W is independently a diradical;
q is 1,2,3,4, 5, or 6;
each Rz0 is independently H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl,
aralkyl, heteroaryl, or heteroaralkyl; or any two occurrences of R20 on the same substituent can be
taken together to form a 4-8 membered optionally substituted ring containing 0-3 heteroatoms
selected from O, N, S, and P;
each R21 is independently H, alkyl, aryl, cycloalkyl, heterocycloalkyl, aralkyl, heteroaryl,
heteroaralkyl or -[C(R20)2]R25 wherein p is 0-6; or any two occurrences of R21 on the same
substituent can be taken together to form a 4-8 membered optionally substituted ring containing 0-3
heteroatoms selected from O, N, S, and P;
each R25 is independently H, hydroxyl, acylarnino, -NOWOR20, -N(R20)C(O)OR20,
-NCR2a)S02(R20), -COR^CR20)^ -OC(O)R20N(R20)(R20), - SC>2N(R20)(R20), -N(R20)(R20), -COOR20,
-C(0)N(OH)(R21), -0S(O)20R19, -S(0)2OR2°, -OP(O)(OR20)(OR20), -NPCOXOR^COR20), or-P(O)
(OR^COR20).
18. A compound as claimed in claim 1 selected from the group consisting of:









19. The compound as claimed in claim 1, -widen has the formula:

20. A pharmaceutical composition, comprising a compound as claimed in claim 1; and a
pharmaceutically acceptable excipient



ABSTRACT


CYCLOPAMINE ANALOGUES
The present invention discloses compositions and methods for modulating smoothened dependent
pathway activation. The present invention also discloses analogs of cyclopamine that can be used to
counteract the phenotypic effects of unwanted activation of a hedgehog pathway, such as resulting
from hedgehog gain-of-function, Ptc loss-of-function or smoothened gain-of-function mutations. The
compounds of the present invention are particularly useful in treating cancers.

Documents:

00744-kolnp-2007-assignment.pdf

00744-kolnp-2007-correspondence-1.1.pdf

00744-kolnp-2007-correspondence-1.2.pdf

00744-kolnp-2007-form-3-1.1.pdf

00744-kolnp-2007-g.p.a.pdf

00744-kolnp-2007-pct others.pdf

0744-kolnp-2007-abstract.pdf

0744-kolnp-2007-claims.pdf

0744-kolnp-2007-correspondence others.pdf

0744-kolnp-2007-description (complete).pdf

0744-kolnp-2007-form1.pdf

0744-kolnp-2007-form3.pdf

0744-kolnp-2007-form5.pdf

0744-kolnp-2007-international publication.pdf

0744-kolnp-2007-international search authority report.pdf

0744-kolnp-2007-pct form.pdf

0744-kolnp-2007-priority document.pdf

744-KOLNP-2007-(06-06-2014)-ABSTRACT.pdf

744-KOLNP-2007-(06-06-2014)-CORRESPONDENCE.pdf

744-KOLNP-2007-(06-06-2014)-DESCRIPTION (COMPLETE).pdf

744-KOLNP-2007-(06-06-2014)-FORM-1.pdf

744-KOLNP-2007-(06-06-2014)-FORM-2.pdf

744-KOLNP-2007-(07-08-2014)-CLAIMS.pdf

744-KOLNP-2007-(07-08-2014)-CORRESPONDENCE.pdf

744-KOLNP-2007-(16-02-2012)-ABSTRACT.pdf

744-KOLNP-2007-(16-02-2012)-AMANDED CLAIMS.pdf

744-KOLNP-2007-(16-02-2012)-DESCRIPTION (COMPLETE).pdf

744-KOLNP-2007-(16-02-2012)-EXAMINATION REPORT REPLY RECEIVED.pdf

744-KOLNP-2007-(16-02-2012)-FORM-1.pdf

744-KOLNP-2007-(16-02-2012)-FORM-13.pdf

744-KOLNP-2007-(16-02-2012)-FORM-2.pdf

744-KOLNP-2007-(16-02-2012)-FORM-3.pdf

744-KOLNP-2007-(16-02-2012)-OTHERS.pdf

744-KOLNP-2007-(16-02-2012)-PETITION UNDER RULE 137.pdf

744-KOLNP-2007-(20-05-2014)-CORRESPONDENCE.pdf

744-kolnp-2007-ASSIGNMENT.pdf

744-kolnp-2007-CANCELLED PAGES.pdf

744-KOLNP-2007-CORRESPONDENCE-1.1.pdf

744-kolnp-2007-CORRESPONDENCE.pdf

744-kolnp-2007-DECISION.pdf

744-kolnp-2007-EXAMINATION REPORT.pdf

744-kolnp-2007-FORM 13-1.1.pdf

744-kolnp-2007-form 13.pdf

744-kolnp-2007-FORM 18-1.1.pdf

744-kolnp-2007-form 18.pdf

744-kolnp-2007-GPA.pdf

744-kolnp-2007-GRANTED-ABSTRACT.pdf

744-kolnp-2007-GRANTED-CLAIMS.pdf

744-kolnp-2007-GRANTED-DESCRIPTION (COMPLETE).pdf

744-kolnp-2007-GRANTED-FORM 1.pdf

744-kolnp-2007-GRANTED-FORM 2.pdf

744-kolnp-2007-GRANTED-FORM 3.pdf

744-kolnp-2007-GRANTED-FORM 5.pdf

744-kolnp-2007-GRANTED-LETTER PATENT.pdf

744-kolnp-2007-GRANTED-SPECIFICATION-COMPLETE.pdf

744-kolnp-2007-INTERNATIONAL PUBLICATION.pdf

744-kolnp-2007-INTERNATIONAL SEARCH REPORT & OTHERS.pdf

744-kolnp-2007-OTHERS.pdf

744-kolnp-2007-PETITION UNDER RULE 137.pdf

744-kolnp-2007-REPLY TO EXAMINATION REPORT.pdf


Patent Number 262780
Indian Patent Application Number 744/KOLNP/2007
PG Journal Number 39/2014
Publication Date 26-Sep-2014
Grant Date 12-Sep-2014
Date of Filing 28-Feb-2007
Name of Patentee INFINITY PHARMACEUTICALS, INC.
Applicant Address 780 MEMORIAL DRIVE, CAMBRIDGE, MASSACHUSETTS 02139
Inventors:
# Inventor's Name Inventor's Address
1 ADAMS JULIAN 280 NEWBURY STREET, #5 BOSTON, MASSACHUSETTS 02116
2 FOLEY MICHAEL A 94 SHAW ROAD, CHESTNUT HILL, MASSACHUSETTS 02467
3 JANARDANAN NAIR, SOMARAJAN NAIR 39 FLEET ROAD, BELMONT,MASSACHUSETTS 02478
4 NEVALAINEN MARTA 145A SUOMI ROAD, UNIT 1, QUINCY,MASSACHUSETTS 02169
5 PORTER JAMES R 10 LAKE SHORE COURT #2, BRIGHTON, MASSACHUSETTS 02135
6 TREMBLAY MARTIN 16 WILLIARD AVENUE, #2 MEDFORD,MASSACHUSETTS 02155
7 CASTRO ALFREDO C 43 WILDWOOD STREET, WINCHESTER, MASSACHUSETTS 01890
PCT International Classification Number C07D 407/04, A61K 31/4355, A61K 31/438
PCT International Application Number PCT/US2005/030406
PCT International Filing date 2005-08-26
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/617,170 2004-10-08 U.S.A.
2 60/625,676 2004-11-05 U.S.A.
3 60/683,169 2005-05-19 U.S.A.
4 60/605,020 2004-08-27 U.S.A.