Title of Invention

FUSED BICYCLIC PYRIMIDINE COMPOUNDS AS AURORA KINASE INHIBITORS

Abstract Fused bicyclic pyrimidine compounds of formula (I) defined herein. Also disclosed are a method for inhibiting Aurora kinase activity and a method for treating cancer with these compounds.
Full Text FUSED BICYCLIC PYRIMIDINE COMPOUNDS
AS AURORA KINASE INHIBITORS
CROSS-REFERENCE TO RELATED APPLICATION
This application claims the benefit of the priority pursuant to 35 U.S.C.
§ 119(e) of U.S. Provisional Patent Application No. 61/049,063, filed April
30, 2008. The content of the prior application is incorporated herein by its
entirety.
BACKGROUND
Protein kinases play important roles in cellular signal pathways that
regulate various cell functions such as differentiation, proliferation, migration
and apoptosis. Deregulation of protein kinases is implicated in a number of
diseases including cancer. Thus protein kinases are attractive therapeutic
targets in cancer treatment.
Aurora kinases, belonging to the serine/threonine subclass of kinases,
are involved in the regulation of mitosis. Three isoforms A, B and C are
known. Aurora A is involved in centrosome maturation and separation, bi-
polar spindle assembly and mitotic entry; Aurora B and C are essential for
accurate chromosome segregation and cytokinesis. The deregulated Aurora
kinase activity has been linked to genetic instability, defects in centrosome
function, spindle assembly, chromosome alignment, and cytokinesis, all of
which can lead to tumorigenesis. For exampAle, both Aurora A and B levels
are up-regulated in various cancers, including breast and colorectal cancers.
Thus, it is of great interest to develop Aurora kinase inhibitors as anti-cancer
drugs.
SUMMARY
This invention is based on the discovery that certain fused bicyclic
pyrimidine compounds can be used to inhibit activity of Aurora kinase (e.g.,
Aurora A, Aurora B, and or Aurora C), which allows these compounds to be
applied in treating Aurora kinase mediated disorders such as cancer.
In one aspect, this invention relates to a furanopyrimidine or
pyrrolopyrimidine compound of formula (I):

In formula (I), one of the two === bonds is a single bond and the other is a
double bond; X1 is O or NRa and X2 is CR2, or X1 is CR2 and X2 is O or NRa,
in which Ra is H, alkyl, alkenyl, alkynyl, aryl, or heteroaryl; each of Y and Z,
independently, is O, S, or NRb, in which Rb is H, alkyl, alkenyl, alkynyl, aryl,
heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl, heterocycloalkenyl,
cyano, or NO2; each of R1 and R2, independently, is H, alkyl, alkenyl, alkynyl,
aryl, heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl,
heterocycloalkenyl, halo, cyano, nitro, OR,, OC(O)Rc, C(O)Rc, C(O)ORc,
C(O)NRcRd, NRcRd, NHC(O)Rc, NHC(O)NRcRd, NHC(S)Rc, NHC(O)ORC,
SO3Rc or SO2NRcRd, in which each of Rc and Rd, independently, is H, alkyl,
alkenyl, alkynyl, aryl, heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl,
or heterocycloalkenyl; or R1 and R2, together with the carbon atoms to which
they are bonded, are cycloalkenyl, heterocycloalkenyl, aryl, or heteroaryl;
each of R3 and R4, independently, is H, halo, nitro, cyano, amino, hydroxy,
alkoxy, aryloxy, alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl;
heterocycloalkyl, aryl, or heteroaryl; A is arylene or heteroarylene; B is 0, S or
NRc, in which Rc is H, alkyl, alkenyl, or alkynyl; C is O, S, alkylene, or NRf,
in which Rf is H, alkyl, alkenyl, or alkynyl; or B and C, together with the
carbon atom to which they are bonded, are heterocycloalkyl or
heterocycloalkenyl; D is H, alkyl, alkenyl, alkynyl, aryl, heteroaryl,
cycloalkyl, cycloalkenyl, heterocycloalkyl, or heterocycloalkenyl; or C and D
together are heterocycloalkyl, heterocycloalkenyl, aryl, or heteroaryl; and n is
0, 1,2, 3, or 4.
One subset of the above-described furanopyrimidine or
pyrrolopyrimidine compounds includes those in which X1 is O or NH and X2
is CR2. In these compounds, R1 can be H, alkyl, alkynyl, aryl (e.g., phenyl
optionally substituted with hydroxy or alkoxy), or heteroaryl; R2 can be H,
alkyl, alkynyl, halo, aryl (e.g., phenyl optionally substituted with hydroxy,
alkoxy, or acylamino), or heteroaryl; each of R3 and R4 can be H; Y can be
NH; Z can be O; A can be phenyl; each of B and C can be NH; D can be alkyl,
aryl, heteroaryl, or cycloalkyl; or n can be 2.
Another subset of the furanopyrimidine or pyrrolopyrimidine
compounds includes those in which R1 is H, alkyl, alkynyl, aryl, or heteroaryl.
In these compounds, R1 can be phenyl optionally substituted with hydroxy or
alkoxy; R2 can be H, alkyl, alkynyl, halo, aryl (e.g., phenyl optionally
substituted with hydroxy, alkoxy, or acylamino), or heteroaryl; each of R3 and
R4 can be H; Y can be NH; Z can be 0; A can be phenyl; each of B and C can
be NH; D can be alkyl, aryl, heteroaryl, or cycloalkyl; or n can be 2.
Yet another subset of the furanopyrimidine or pyrrolopyrimidine
compounds includes those in which Z is O and each of B and C is NH. In
these compounds, R1 can be H, alkyl, alkynyl, aryl (e.g., phenyl optionally
substituted with hydroxy or alkoxy), or heteroaryl; R2 can be H, alkyl, alkynyl,
halo, aryl (e.g., phenyl optionally substituted with hydroxy, alkoxy, or
acylamino), or heteroaryl; each of R3 and R4 can be H; Y can be NH; Z can be
0; A can be phenyl; each of B and C can be NH; D can be alkyl, aryl,
heteroaryl, or cycloalkyl; or n can be 2.
Still another two subsets of the furanopyrimidine or pyrrolopyrimidine
compounds include those in which X1 is CR2 and X2 is 0 or NH and those in
which R1 and R2, together with the carbon atoms to which they are bonded, are
cycloalkenyl, heterocycloalkenyl, aryl, or heteroaryl.
The term "alkyl" refers to a straight or branched monovalent
hydrocarbon containing 1-20 carbon atoms (e.g., C1-C10). Examples of alkyl
include, but are not limited to, methyl, ethyl, n-propyl, i-propyl, n-butyl, i-
butyl, and t-butyl. The term "alkylene" refers to a straight or branched
bivalent hydrocarbon, containing 1-20 carbon atoms (e.g., C1-C10). Examples
of alkylene include, but are not limited to, methylene and ethylene. The term
"alkenyl" refers to a straight or branched monovalent or bivalent hydrocarbon
containing 2-20 carbon atoms (e.g., C2-C10) and one or more double bonds.
Examples of alkenyl include, but are not limited to, ethenyl, propenyl,
propenylene, allyl, and 1,4-butadienyl. The term "alkynyl" refers to a straight
or branched monovalent or bivalent hydrocarbon containing 2-20 carbon
atoms (e.g., C2-C10) and one or more triple bonds. Examples of alkynyl
include, but are not limited to, ethynyl, ethynylene, 1-propynyl, 1- and 2-
butynyl, and l-methyl-2-butynyl. The term "alkoxy" refers to an
-O-alkyl radical. Examples of alkoxy include, but are not limited to, methoxy,
ethoxy, n-propoxy, isopropoxy, n-butoxy, iso-butoxy, sec-butoxy, and tert-
butoxy. The term "alkylamino" refers to an -N(R)-alkyl in which R can be H,
alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, heterocycloalkyl,
heterocycloalkenyl, aryl, or heteroaryl.
The term "cycloalkyl" refers to a monovalent or bivalent saturated
hydrocarbon ring system having 3 to 30 carbon atoms (e.g., C3-C12).
Examples of cycloalkyl include, but are not limited to, cyclopropyl,
cyclobutyl, cyclopentyl, cyclohexyl, 1,4-cyclohexylene, cycloheptyl, and
cyclooctyl. The term "cycloalkenyl" refers to a monovalent or bivalent non-
aromatic hydrocarbon ring system having 3 to 30 carbons (e.g., C3-C12) and
one or more double bonds. Examples include cyclopentenyl, cyclohexenyl,
and cyclohcptenyl. The term "heterocycloalkyl" refers to a monovalent or
bivalent nonaromatic 5-8 membered monocyclic, 8-12 membered bicyclic, or
11-14 membered tricyclic ring system having one or more heteroatoms (such
as 0, N, S, or Se). Examples of heterocycloalkyl groups include, but are not
limited to, piperazinyl, pyrrolidinyl, dioxanyl, morpholinyl, and
"tetrahydrofuranyl." The term "heterocycloalkenyl" refers to a monovalent or
bivalent nonaromatic 5-8 membered monocyclic, 8-12 membered bicyclic, or
11-14 membered tricyclic ring system having one or more heteroatoms (such
as O, N, S, or Se) and one or more double bonds.
The term "aryl" refers to a monovalent 6-carbon monocyclic, 10-
carbon bicyclic, 14-carbon tricyclic aromatic ring system. Examples of aryl
groups include, but are not limited to, phenyl, naphthyl, and anthracenyl. The
term "arylene" refers to a bivalent 6-carbon monocyclic, 10-carbon bicyclic,
14-carbon tricyclic aromatic ring system. The term "aryloxyl" refers to an -O-
aryl. The term "arylamino" refers to an -N(R)-aryl in which R can be H,
alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, heterocycloalkyl,
heterocycloalkenyl, aryl, or heteroaryl. The term "heteroaryl" refers to a
monvalent aromatic 5-8 membered monocyclic, 8-12 membered bicyclic, or
11-14 membered tricyclic ring system having one or more heteroatoms (such
as 0, N, S, or Se). Examples of heteroaryl groups include pyridyl, furyl,
imidazolyl, benzimidazolyl, pyrimidinyl, thienyl, quinolinyl, indolyl, and
thiazolyl. The term "heteroarylene" refers to a bivalent aromatic 5-8
membered monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic
ring system having one or more heteroatoms (such as 0, N, S, or Se).
Alkyl, alkenyl, alkynyl, cycloalkyl, heterocycloalkyl, cycloalkenyl,
heterocycloalkenyl, alkylamino, aryl, heteroaryl, alkylene, arylene, and
heteroarylene mentioned above include both substituted and unsubstituted
moieties. Possible substituents on alkylamino, cycloalkyl, heterocycloalkyl,
cycloalkenyl, heterocycloalkenyl, aryl, arylene, heteroaryl, and heteroarylene
include, but are not limited to, C1-C10 alkyl, C2-C10 alkenyl, C2-C10 alkynyl,
C3-C20 cycloalkyl, C3-C20 cycloalkenyl, C1-C20 heterocycloalkyl, C1-C20
heterocycloalkenyl, C1-C10 alkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy,
amino, C1-C10 alkylamino, arylamino, hydroxy, halo, oxo (O=), thioxO (S=),
thio, silyl, C1-C10 alkylthio, arylthio, C1-C10 alkylsulfonyl, arylsulfonyl,
acylamino (RC(O)NR'-, in which each of R and R', independently, can be H,
alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, heterocycloalkyl,
heterocycloalkenyl, aryl, or heteroaryl), aminoacyl (NRR'C(O)-),
aminothioacyl, amidino, mercapto, amido (NRR'C(O)-), thioureido,
"thiocyanato, sulfonamide, giianidine, ureido, cyano, nitro, acyl, thioacyl,
acyloxy, carbamido, carbamyl, carboxyl, and carboxylic ester. On the other
hand, possible substituents on alkyl, alkenyl, alkynyl, or alkylene include all
of the above-recited substituents except C1-C10 alkyl. Cycloalkyl,
cycloalkenyl, heterocycloalkyl, heterocycloalkenyl, aryl, and heteroaryl can
also be fused with each other.
In another aspect, this invention relates to a thienopyrimidine
compound of formula (I):
In formula (I), one of the two === bonds is a single bond and the other is a
double bond; X1 is S and X2 is CR2, or X1 is CR2 and X2 is S; each of Y and Z,
independently, is O, S, or NRb, in which Rb is H, alkyl, alkenyl, alkynyl, aryl,
heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl, heterocycloalkenyl, or
cyano; each of R1 and R2, independently, is alkynyl, aryl, heteroaryl, NRcRd,
NHC(O)Rc, NHC(O)NRcRd, or.NHC(S)Rc, in which each of Rc and Rd,
independently, is H, alkyl, alkenyl, alkynyl, aryl, heteroaryl, cycloalkyl,
cycloalkenyl, heterocycloalkyl, or heterocycloalkenyl; or R1 and R2, together
with the carbon atoms to which they are bonded, are cycloalkenyl,
heterocycloalkenyl, aryl, or heteroaryl; each of R3 and R4, independently, is H,
halo, nitro, cyano, amino, hydroxy, alkoxy, aryloxy, alkyl, alkenyl, alkynyl,
cycloalkyl, cycloalkenyl, heterocycloalkyl, aryl, or heteroaryl; A is arylene or
heteroarylene; B is 0, S or NRe, in which R, is H, alkyl, alkenyl, or alkynyl; C
is 0, S, alkylene, or NRf, in which Rf is H, alkyl, alkenyl, or alkynyl; or B and
C, together with the carbon atom to which they are bonded, are
heterocycloalkyl or heterocycloalkenyl; D is H, alkyl, alkenyl, alkynyl, aryl,
heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl, or heterocycloalkenyl;
or C and D together are heterocycloalkyl, heterocycloalkenyl, aryl, or
heteroaryl; and n is 0, 1, 2, 3, or 4.
One subset of the above-described thienopyrimidine compounds
includes those in "which X1 is S and X2 is CR2. In these compounds, R1 and
R2, together with the carbon atoms to which they are bonded, can be
cycloalkenyl (e.g., cyclohexenyl), heterocycloalkenyl, aryl, or heteroaryl; each
of R3 and R4 can be H; Y can be NH; Z can be O; A can be phenyl; each of B
and C can be NH; D can be alkyl, aryl, heteroaryl, or cycloalkyl; or n can be 2.
Another subset of the thienopyrimidine compounds includes those in
which Z is 0 and each of B and C is NH. In these compounds, one of R1 and
R2 can be alkynyl optionally substituted with alkyl, alkylamino, or amido, and
the other can be aryl or heteroaryl.
The fused bicyclic pyrimidine compounds described above (i.e.,
furanopyrimidine pyrrolopyrimidine, and thienopyrimidine compounds of
formula (I)) include the compounds themselves, as well as their salts, their
solvates, and their prodrugs, if applicable. A salt, for example, can be formed
between an anion and a positively charged group (e.g., amino) on a fused
bicyclic pyrimidine compound. Suitable anions include chloride, bromide,
iodide, sulfate, bisulfate, sulfamate, nitrate, phosphate, citrate,
methanesulfonate, trifluoroacetate, glutamate, glucuronate, glutarate, malate,
maleate, succinate, fumarate, tartrate, tosylate, salicylate, lactate,
naphthalenesulfonate, and acetate. Likewise, a salt can also be formed
between a cation and a negatively charged group (e.g., carboxylate) on a fused
bicyclic pyrimidine compound. Suitable cations include sodium ion,
potassium ion, magnesium ion, calcium ion, and an ammonium cation such as
tetramethylammonium ion. The fused bicyclic pyrimidine compounds also
include those salts containing quaternary nitrogen atoms. Examples of
prodrugs include esters and other pharmaceutically acceptable derivatives,
which, upon administration to a subject, are capable of providing active fused
bicyclic pyrimidine compounds.
In still another aspect, this invention relates to a method of inhibiting
Aurora kinase activity by contacting a cell expressing Aurora kinase with an
effective amount of one or more of the fused bicyclic pyrimidine compounds
described above. The cell can be a tumor cell or a cell that over-expresses
Aurora kinase.
In yet another aspect, this invention relates to a method of treating an
-Aurora kinase mediated disorder such as cancer by administering to a subject
in need thereof an effective amount of one or more of the fused bicyclic
pyrimidine compounds described above.
Also within the scope of this invention is a pharmaceutical
composition containing one or more of the above-described fused bicyclic
pyrimidine compounds for use in treating caner, as well as this therapeutic use
and use of the compounds for the manufacture of a medicament for treating
cancer.
The details of one or more embodiments of the invention are set forth
in the description below. Other features, objects, and advantages of the
invention will be apparent from the description and from the claims.
DETAILED DESCRIPTION
Shown below arc exemplary compounds of this invention:
The fused bicyclic pyrimidine compounds of this invention can be
prepared by conventional chemical transformations (including protecting
group methodologies), e.g., those described in R. Larock, Comprehensive
Organic Transformations, VCH Publishers (1989); T.W. Greene and P.G.M.
Wuts, Protective Groups in Organic Synthesis, 3 Ed., John Wiley and Sons
(1999); L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic
Synthesis, John Wiley and Sons (1994); and L. Paquette, ed., Encyclopedia of
Reagents for Organic Synthesis, John Wiley and Sons (1995) and subsequent
editions thereof. Schemes land 2 below show transformations for
synthesizing compounds of this invention.
The route shown in Scheme 1 exemplifies synthesis of the
furanopyrimidine compounds (VIII) of the present invention. To a mixture of
appropriately substituted benzoin (I) and malanonitrile (II) in DMF maintained
at 0°C, diethylamine is added dropwise over a time of 30 min. The reaction
mixture is allowed to stir for 16 h. Water is then added to the reaction
mixture. A precipitate thus formed is collected and crystallized in ethanol to
give substituted furan (III). To a mixture of furan (III) and formic acid
maintained at 0°C, acetic anhydride is added dropwise over a period of 30
min. Then the reaction is maintained at 100°C for 16 h. Water is then added
to the reaction mixture and a precipitate is formed to afford a
furanopyrimidinone (IV). A mixture of (IV) and POCl3 is heated at 55-65°C
for 3 h. Water is then added followed by sodium bicarbonate. The resulting
mixture is extracted with ethyl acetate. Concentration of the organic layer,
followed purification of the residue by column chromatography, affords a
chlorine-substituted furanopyrimidine (V). Reaction of (V) with amine (VI)
by heating in n-butanol for 16 h affords amino-substitutcd furanopyrimidine
(VII). Compound (VIII) can be synthesized via reacting (VII) with
appropriate isocyanates in refluxing dichloromethane or by reacting (VII) with
l,l'-carbonyldiimidazole (CDI) in dichloromethane, followed by reaction with
the desired amines or anilines.
The furanopyrimidine compounds of this invention can also be
synthesised by alternative methods. Schemes 2 and 3 below exemplify such
alternative synthetic routes.
As shown in Scheme 2 below, bromination of a chloro-substituted
furanopyrimidine (IX) using AT-bromosuccinimide (NBS) in DMF affords the
bromo, chloro-substituted furanopyrimidine (X). Alternative use of N-
chlorosuccinimide (NCS) ran afford the corresponding chloro derivative of
(X). Reaction of (X) with the amine (VI) by refluxing in ethanol gives bromo,
amino-substituted furanopyrimidine (XI). Compound (XII) is then
synthesized by reacting (XI) with appropriate isocyanates in refluxing
dichloromethane or by reacting (XI) with 1,1'-carbonyldiimidazole (CDI) in
dichloromethane, followed by reaction with the desired amines or anilines.
Furanopyrimidine compound (XIII) of this invention can be synthesized under
standard Suzuki coupling condition by reacting compound (XII) with
appropriate boronic acid, in the presence of Pd(OAc)2, PPb.3, and sodium
carbonate in a mixture of water and dioxane under refluxing conditions for 2-3
h. Furanopyrimidine compound (XIV) of this invention can be synthesized
under standard Sonagashira coupling condition by reacting compound (XII)
with appropriate alkynyl compound, in the presence of Pd(PPh3)2Cl2, PPh3 and
diisopropylcthyl amine (DIPEA) in DMF at 60°C for 16 h.
As shown in Scheme 3 below, compound (XV) is reacted with the
amine (VI) by refluxing in ethanol to give furanopyrimidine (XVI).
Compound (XVII) is then synthesized by reacting (XVI) with an isocyanatc of
choice in refluxing dichloromethane or by reacting (XVI) with 1,1'-
carbonyldiimidazole (CDI) in dichloromethane, followed by a reaction with a
desired amine or aniline. Treatment of compound (XVII) with BBr3 in
dichloromethane affords demethylated compound (XVIII). This compound is
alkylated with bromo-chloro-alkane compound (XIX) and then reacted with
amine (XX) of choice to afford the desired product (XXI).
The thienopyrimidine and pyrrolopyrimidine compounds of this
invention can also be synthesized in manners similar to those outlined in
Schemes 1,2, and 3 with necessary modifications as recognized by those
skilled in the art.
A fused bicyclic pyrimidine compound thus synthesized can be further
purified by flash column chromatography, high performance liquid
chromatography, crystallization, or any other suitable methods.
Also within the scope of this invention are (1) a pharmaceutical
composition that contains an effective amount of at least one of the fused
bicyclic pyrimidine compounds of this invention and a pharmaceutic ally
acceptable carrier, and (2) a method for treating an Aurora kinase mediated
disorder such as cancer by administering to a subject in need of this treatment
an effective amount of such a fused bicyclic pyrimidine compound.
As used herein, the term "treating" refers to administering a fused
bicyclic pyrimidine compound to a subject that has an Aurora kinase mediated
disorder such as cancer, or has a symptom of or a predisposition toward it,
with the purpose to cure, heal, alleviate, relieve, alter, remedy, ameliorate,
improve, affect, or reduce the risk of, the disorder, the symptoms of or the
predisposition toward the disorder. For example, certain compounds of this
invention can be used to reduce the risk of metastasis. The term "an effective
amount" refers to the amount of the active agent that is required to confer the
intended therapeutic effect in the subject. Effective amounts may vary, as
recognized by those skilled in the art, depending on route of administration,
excipient usage, and the possibility of co-usage with other agents.
Cancer that can be treated by the methods of the invention includes
both solid and haematological tumours of various organs. Examples of solid
tumors include pancreatic cancer, bladder cancer including urothelium cancer;
colorectal cancer; breast cancer, including metastatic breast cancer; male
genital tract cancer such as seminal vesicle cancer, testes cancer, germ cell
tumors, and prostate cancer, including androgen-dependent and androgen-
independent prostate cancer, renal cancer, including, e.g., metastatic renal cell
carcinoma; hepatocellular cancer; lung cancer, including, e.g., non-small cell
lung cancer (NSCLC), bronchioloalveolar carcinoma (BAC), and
adenocarcinoma of the lung; ovarian cancer, including, e.g., progressive
epithelial or primary peritoneal cancer; cervical cancer, uterus cancer;
gestational trophoblastic disease such as choriocarcinoma; gastric cancer; bile
duct cancer; gallbladder cancer; small intestine cancer, esophageal cancer;
oropharyngeal cancer; hypopharyngeal cancer, eye cancer, including,
retinoblastoma; nerve cancer, including, Schwannoma, meningioma;
neuroblastoma and neuroma; head and neck cancer, including, e.g., squamous
cell carcinoma of the head and neck; melanoma; plasmacytoma; endocrine
gland neoplasm, including, pituitary adenoma, thyroid cancer, and adrenal
tumor; neuroendocrine cancer, including metastatic neuroendocrine tumors;
brain tumors, including, e.g., glioma, anaplastic oligodendroglioma,
glioblastoma multiforme, and astrocytoma such as adult anaplastic
astrocytoma; bone cancer; and sarcomas from soft tissue or bone such as
Kaposi's sarcoma. Examples of hematologic malignancy include acute
myeloid leukemia (AML) or chloroma; chronic myelogenous leukemia
(CML), including accelerated CML and CML blast phase (CML-BP); acute
lymphoblastic leukemia (ALL); chronic lymphocytic leukemia (CLL);
Hodgkin's disease (HD); non-Hodgkin's lymphoma (NHL), including
follicular lymphoma, cutaneous T-cell lymphoma (such as mycosis
fungoides), and mantle cell lymphoma; B-cell lymphoma; T-cell lymphoma;
multiple myeloma (MM); Waldenstrom's macroglobulinemia;
myelodysplastic syndromes (MDS), including refractory anemia (RA),
refractory anemia with ringed siderblasts (RARS), (refractory anemia with
excess blasts (RAEB), and RAEB in transformation (RAEB-T); and
myeloproliferative syndromes. Other cancer types, in which Aurora kinase
activity is upregulated/dysregulated, are described in WO 2006/003440 Al,
WO 2004/058781, US Patent Publication 2007/0149561, EP 1771450, and
Cancer treatment reviews 34, 175-182 (2008).
The compounds of this invention can be administered in conjunction
with cytotoxic agents, radiotherapy, or immunotherapy. Non-limiting
examples of cytotoxic agents suitable for use in combination with the Aurora
kinase inhibitors of the invention include: antimetabolites, including, e.g.,
capecitibine, gemcitabine, 5-fluorouracil or 5-fluorouracil/ leucovorin,
fiudarabine, cytarabine, mercaptopurine, thioguanine, pentostatin, and
methotrexate; topoisomerase inhibitors, including, e.g., etoposide, teniposide,
camptothecin, topotecan, irinotecan, doxorubicin, and daunorubicim vinca
alkaloids, including, e.g., vincristine and vinblastine taxancs, including, e.g.,
paclitaxel and docetaxel; platinum agents, including, e.g., cisplatin,
carboplatin, and oxaliplatin; antibiotics, including, e.g., actinomycin D,
bleomycin, mitomycin C, adriamycin, daunorubicin, idarubicin, doxorubicin
and pegylated liposomal doxorubicin; alkylating agents such as melphalan,
chlorambucil, busutfah, thiotepa, ifosfamide, carmustine, lomustine,
semustine, streptozocin, decarbazine, and cyclophosphamide; thalidomide and
related analogs, including, e.g., CC-5013 and CC-4047; protein tyrosine
kinase inhibitors, including, e.g., imatinib mesylate and gefitinib; antibodies,
including, e.g., trastuzumab, rituximab, cetuximab, and bevacizumab;
mitoxantrone; dexamethasone; prednisone; and temozolomide.
To practice the method of this invention, the above-described
pharmaceutical composition can be administered orally, parenterally, by
inhalation spray, topically, rectally, nasally, buccally, vaginally or via an
implanted reservoir. The term "parenteral" as used herein includes
subcutaneous, intracutaneous, intravenous, intramuscular, intraarticular,
intraarterial, intrasynovial, intrasternal, intrathecal, intralesional, and
intracranial injection or infusion techniques.
A sterile injectable composition, e.g., a sterile injectable aqueous or
oleaginous suspension, can be formulated according to techniques known in
the art using suitable dispersing or wetting agents (such as Tween 80) and
suspending agents. The sterile injectable preparation can also be a sterile
injectable solution or suspension in a non-toxic parenterally acceptable diluent
or solvent, for example, as a solution in 1,3-butanediol. Among the acceptable
vehicles and solvents that can be employed are mannitol, water, Ringer's
solution and isotonic sodium chloride solution. In addition, sterile, fixed oils
are conventionally employed as a solvent or suspending medium (e.g.,
synthetic mono- or diglycerides). Fatty acids, such as oleic acid and its
glyceride derivatives are useful in the preparation of injectables, as are natural
pharmaceutically-acceptable oils, such as olive oil or castor oil, especially in
their polyoxyethylated versions. These oil solutions or suspensions can also
contain a long-chain alcohol diluent or dispersant, or carboxymethyl cellulose
or similar dispersing agents. Other commonly used surfactants such as
Tweens or Spans or other similar emulsifying agents or bioavailability
enhancers which are commonly used in the manufacture of pharmaceutically
acceptable solid, liquid, or other dosage forms can also be used for the
purposes of formulation.
A composition for oral administration can be any orally acceptable
dosage form mcludmg, but not limited to, capsules; tablets, emulsions and
aqueous suspensions, dispersions and solutions. In the case of tablets for oral
use, carriers that are commonly used include lactose and com starch.
Lubricating agents, such as magnesium stearate, are also typically added. For
oral administration in a capsule form, useful diluents include lactose and dried
com starch. When aqueous suspensions or emulsions are administered orally,
the active ingredient can be suspended or dissolved in an oily phase combined
with emulsifying or suspending agents. If desired, certain sweetening,
flavoring, or coloring agents can be added. A nasal aerosol or inhalation
composition can be prepared according to techniques well known in the art of
pharmaceutical formulation. A fused bicyclic pyrimidine compound-
containing composition can also be administered in the form of suppositories
for rectal administration.
The carrier in the pharmaceutical composition must be "acceptable" in
the sense of being compatible with the active ingredient of the formulation
(and preferably, capable of stabilizing it) and not deleterious to the subject to
be treated. For example, one or more solubilizing agents which form more
soluble complexes with the fused bicyclic pyrimidine compounds, or more
solubilizing agents, can be utilized as pharmaceutical carriers for delivery of
the active compounds. Examples of other carriers include colloidal silicon
dioxide, magnesium stearate, sodium lauryl sulfate, and D&C Yellow #10.
Suitable in vitro assays can be used to preliminarily evaluate the
efficacy of the fused bicyclic pyrimidine compounds of this invention in
inhibiting activity of Aurora kinase. The compounds can further be examined
for their efficacy in treating cancer. For example, a compound can be
administered to an animal (e.g., a mouse model) having cancer and its
therapeutic effects are then assessed. Based on the results, an appropriate
dosage range and administration route can also be determined.
Certain compounds of this invention can also inhibit the activities of
other protein kinases. For example, Compound 82 inhibits the activities of
PLK4, PDGFRB, and FLT3. Therefore, this invention also features a method
for inhibiting the acitivites of protein kinases other than Aurora kinase and a
method for treating disorders mediated via such protein kinases by
"administerihg to a subject in need of this treatment an effective amount of the
fused bicyclic pyrimidine compound described herein. Protein kinases that
can be inhibited by the compounds of the invention include but are not limited
to AURORA, BCR-ABL, VEGFR, PDGFR, EGFR, FLT3, JAK2, C-ABL,
PDK1, CDK, CHK1, LCK, FGFR, RET, C-KIT, C-MET, EPH, SRC, MEK1,
RAF, AKT, PI3K, MTOR, PLK, RET, TIE2, AXL, IKK, PIM, and ROCK
kinase. Other target protein kinases are described by, e.g., Manning et al,
Science 2002,298,1912 and Noble et al., Science 2004, 303, 1800. Diseases
that are associated with protein kinases and can be treated by the methods of
the invention include but are not limited to cancer, diabetes, inflammation,
allergy/asthma, immune diseases, central nervous system diseases, and
angiogenesis disorders.
Without further elaboration, it is believed that the above description
has adequately enabled the present invention. The following examples are,
therefore, to be construed as merely illustrative, and not limitative of the
remainder of the disclosure in any way whatsoever. All of the publications
cited herein are hereby incorporated by reference in their entirety.
Example 1: Synthesis of N-(4-aminoben2yl)-5,6-diphenylfuro[2,3-d]pyrimidin-4-
amine (Compound 1)
4-Chloro-5,6-diphenylfuro[2,3-d]pyrimidine (0.10 g) and 4-
(aminomethyl)aniline (0.05 g) in K-butanol (5 mL) were heated at 80°C for 16
h. The reaction mixture was concentrated and the residue was partitioned
between water and ethyl acetate. The organic layer was concentrated and the
residue was purified by silica gel column chromatography using a mixture of
dichloromethane:methanol (40:1), to give N-(4-aminobenzyl)-5,6-
diphenylfuro[2,3-d]pyrimidin-4-amine (0.09 g, 70%). 1H NMR (300 MHz,
CDCl3): d 8.44 (s, 1H), 7.54-7.44 (m, 8H), 7.27-7.25 (m, 2H), 6.93 (d, 2H),
6.10 (d, 2H), 4.87 (t, 1H), 4.51 (d, 2H), 3.65 (brs, 2H). LC-MS (ESI) m/z
393.7 (M+H).
Examples 2-5: Syntheses of Compounds 2-5
Compounds 2-5 were prepared in a manner similar to that described in
Example 1. 1H NMR and MS data of these compounds are listed below:
Compound 2: LC-MS (ESI) m/z 394.2 (M+H).
Compound 3: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.47-7.22
(m, 10 H), 6.79 (d, 2H), 6.59 (d, 2H), 4.68 (brt, 1H), 3.69-3.63 (m, 4H), 2.67
(t, 2H).
Compound 4: LC-MS (ESI) m/z 408.2 (M+H).
Compound 5: 1H NMR(400 MHz, CDCl3): d 8.44 (s, 1H), 7.90 (d, J=
8.0 Hz, 2H), 7.79 (bs, 1H), 7.23-7.60 (m, 15H), 7.02 (d, J= 8.0 Hz, 2H), 4.67
(bt,J= 5.2 Hz, 1H), 3.72 (q,J= 6.4 Hz, 2H), 2.80 (t,J= 6.4 Hz, 2H); LC-MS
(ESI) m/z 511.2 (M+H).
Example 6: Synthesis of l-(4-(2-(5,6-diphenylfuro[2,3-d]pyrimidin-4-
ylamino)ethyl)phenyl)-3-phenylurea (Compound 6)

2-Amino-4,5-diphenylfuran-3-carbonitrile (step a): Diethylamine
(13.8 g) was added dropwise over a period of 30 min to a mixture of benzoin
(10 g) and malononitrile (3.8 g) in DMF (30 ml) at 0°C (the reaction
temperature should not exceed 40°C). After the resulting mixture was stirred
at room temperature for 16 h, water (100 mL) was added. The resulting
precipitate was filtered, washed with sufficient amount of water, then with
hexanes, and dried. The solid was recrystallized from ethanol to provide
yellowish-brown solid product of 2-armno-4,5-diphenylfuran-3-carbonitrile (6
g, 49%). 1H NMR (300 MHz, CDCl3): d 7.47-7.34 (m, 8H), 7.28-7.18 (m,
2H), 4.94 (br, 2H). LCMS (ESI) m/z 261.1 (M+H).
5,6-Diphenylfuro[2,3-d]pyrimidin-4(3H)-one (step b): A mixture of
2-amino-4,5-diphenylfuran-3-carbonitrile (2.0 g) and formic acid (24 mL) was
cooled to 0°C and acetic anhydride (24 mL) was added dropwise. The
resulting mixture was stirred for 1 h. The reaction mixuture was then warmed
to 100 C and stirred for 16 h. The reaction mixture was cooled and water was
added (40 mL). The precipitated was filtered and washed thoroughly with
water and hexanes to give 5,6-diphenylfuro[2,3-d]pyrimidin-4(3/7)-one (2.1 g,
95%). 1HNMR (300 MHz, CDCl3): d 7.94 (s, 1H), 7.56-7.52 (m, 4H), 7.46-
7.43 (m, 3H), 7.32-7.28 (m, 3H), 7.22 (s, 1H). LC-MS (ESI) m/z 289.1
(M+H).
4-Chloro-5,6-diphenylfuro[2,3-d]pyrimidine (step c): A mixture of
5,6-diphenylfuro[2,3-d]pyrimidin-4(3H)-one (3 g) and POCl3 (30 mL) was
heated at 55-65°C for 3 h. Water was then added followed by sodium
bicarbonate. The resulting mixture was extracted with ethyl acetate. The
organic layer was concentrated and the crude compound was purified by silica
gel column chromatography using a mixture of hexanes:ethyl acetate (95:5), to
give white solid 4-chloro-5,6-diphenylfuro[2,3-d]pyrimidine (2 g, 63%). 1H NMR (300 MHz, CDCl3): 5 8.77 (s, 1H), 7.61-7.58 (m, 2H), 7.52-7.46 (m,
5H), 7.35-7.32 (m, 3H). LC-MS (ESI) m/z 307.0 (M+H).
N-(4-aminophenethyl)-5,6-diphenylfuro[2,3-d]pyrimidin-4-amine
(step d, Compound 3): 4-Chloro-5,6-diphenylfuro[2,3-d]pyrirnidine (0.200 g)
and 4-(2-aminoethyl)aniline (0.107 g) in n-butanol (5 mL) were heated at
80°C for 16 h. The reaction mixture was concentrated and the residue was
partitioned between water and ethyl acetate. The organic layer was
concentrated and the crude compound was purified by silica gel column
chromatography using a mixture of dichloromethane:methanol (40:1), to give
N-(4-aminophenemyl)-5,6-diphenylfuro[2,3-d]pyrimidin-4-amine (0.195 g,
74%).
1-(4-(2-(5,6-Diphenylfuro[2,3-d]pyrimidin-4-
ylamino)ethyl)phenyl)-3-phenylurea (step e, Compound 6): To a solution of
N-(4-aminophenethyl)-5,6-diphenylfuro[2,3-d]pyrimidin-4-amine (0.195 g) in
acetonitrile (10 mL) was added phenyl isocyanate (0.063 g). After stirring at
room temperature for 16 h, the reaction mixture was concentrated and the
residue was partitioned between water and ethyl acetate. The organic layer
was concentrated and the crude compound was purified by silica gel column
chromatography using a mixture of hexanes:ethyl acetate (1:1), to give l-(4-
(2-(5,6-diphenylfuro[2,3-d]pyrimidin-4-ylamino)ethyl)phenyl)-3-phenylurea
(0.240 g, 95%). 1H-NMR (CDCl3, 300MHz): d 8.42 (s, 1 H), 7.58 (bra, 1 H),
7.43-7.39 (m, 5 H), 7.33-7.18 (m, 11 H), 7.03-6.98 (m, 1 H), 6.86-6.83 (m, 2
H), 4.67 (t, 1 H), 3.63 (q, 2 H), 2.66 (t, 2 H). LC-MS (ESI) m/z 526.2 (M+H).
Examples 7-41: Syntheses of Compounds 7-41
Compounds 7-41 were prepared in a manner similar to that described
in
Example 6. 1H NMR and MS data of these compounds are listed below:
Compound 7: 1H-NMR (CDCl3, 400MHz): d 8.42 (s, 1H), 7.38-7.47
(m, 5H), 7.28-7.32 (m, 2H), 7.18-7.25 (m, 5H), 6.97 (d, J= 8.4 Hz, 2H), 4.79
(bs, 2H), 4.65 (bt, J= 5.6 Hz, 1H), 3.69 (q, J= 6.4 Hz, 2H), 2.75 (t, J= 6.4
Hz, 2H); LC-MS (ESI) m/z 450.2 (M+H).
Compound 8: 1H-NMR (CDCl3, 400MHz): d 8.43 (s, 1H), 7.39-7.49
(m, 6H), 7.30-7.33 (m, 2H), 7.23-7.27 (m, 2H), 7.18 (d, J= 8.0 Hz, 2H), 6.95
(d, J= 8.0 Hz, 2H), 6.31 (bs, 1H), 4.67 (bq, J= 4.8 Hz, 1H), 4.65 (bt, J= 5.6
Hz, 1H), 3.69 (q, J= 6.4 Hz, 2H), 2.86 (d, J = 4.8 Hz, 3H), 2.75 (t, J= 6.4 Hz,
2H); LC-MS (ESI) m/z 464.2 (M+H).
Compound 9: 1H-NMR (CDCl3, 400MHz): 8 8.43 (s, 1H), 7.40-7.50
(m, 5H), 7.23-7.31 (m, 7H), 6.92 (d,J= 8.4 Hz, 2H), 6.28 (bs, 1H), 4.66 (bt,J
= 5.2 Hz, 1H), 3.69 (q, J= 6.4 Hz, 2H), 3.05 (s, 6H), 2.74 (t, J= 6.4 Hz, 2H);
LC-MS (ESI) m/z 478.2 (M+H).
Compound 10: 1H-NMR (CDCl3, 400MHz): d 8.42 (s, 1H), 7.37-7.48
(m, 6H), 7.23-7.32 (m, 9H), 7.17 (d, J= 8.4 Hz, 2H), 6.93 (d, J= 8.4 Hz, 2H),
6.37 (bs, 1H), 5.05 (bt, J= 5.6 Hz, 1H), 4.64 (bt, J= 5.2 Hz, 1H), 4.46 (d, J=
5.6 Hz, 2H), 3.67 (q, J= 6.4 Hz, 2H), 2.73 (t, J= 6.4 Hz, 2H); LC-MS (ESI)
m/z 540.2 (M+H).
Compound 11: 1H-NMR (CDCl3, 400MHz): d 8.40 (s, 1H), 7.27-7.45
(m, 11H), 7.16-7.24 (m, 4H), 7.09 (t, J = 7.2 Hz, 1H), 6.94-7.01 (m, 2H),
6.72 (d, J= 7.6 Hz, 1H), 4.68 (bt, J= 5.6 Hz, 1H), 3.67 (q, J= 6.4 Hz, 2H),
2.72 (t, J = 6.4 Hz, 2H); LC-MS (ESI) m/z 526.2 (M+H).
Compound 12: 1H-NMR (CDCl3, 400MHz): d 8.41 (s, 1H), 7.74 (bs,
1H), 7.65 (bs, 1H), 7.29-7.49 (m, 15H), 7.24-7.26 (m, 2H), 7.04 (s, 1H), 6.93
(d,J= 7.6 Hz, 1H), 4.65 (bt, = 5.6 Hz, 1H), 3.71 (q, J= 6.4 Hz, 2H), 2.80 (t,
J= 6.4 Hz, 2H); LC-MS (ESI) m/z 542.2 (M+H).
Compound 13: 1H-NMR (CDCl3,400MHz): d 8.43 (s, 1H), 7.75 (bs,
1H), 7.72 (bs, 1H), 7.58-7.63 (m, 1H), 7.32-7.49 (m, 12H), 7.30 (d, J= 8.4
Hz, 2H), 7.24-7.26 (m, 2H), 7.05 (d, J= 8.4 Hz, 2H), 4.69 (bt, J = 5.6 Hz,
1H), 3.72 (q, J= 6.4 Hz, 2H), 2.80 (t, J= 6.4 Hz, 2H); LC-MS (ESI) m/z 542.2
(M+H).
Compound 14: 1H-NMR (CDCl3, 300MHz): d 8.42 (s, 1 H), 7.54-7.47
(m, 1 H), 7.47-7.37 (m, 5 H), 7.31-7.27 (m, 3 H), 7.24-7.17 (m, 5 H), 7.04-
7.01 (m, 1 H), 6.93-6.90 (m, 2 H), 6.76-6.69 (m, 1 H), 4.68 (t, 1 H), 4.66 (q, 2
H),2.71(t,2H).
Compound 15: 1H-NMR (CDCl3, 300MHz): d 8.42 (s, 1 H), 7.82 (brs,
1 H), 7.72 (brs, 1 H), 7.64-7.51 (m, 1 H), 7.44-7.37 (m, 5 H), 7.30-7.26 (m, 3
H), 7.22-7.17 (m, 5 H), 7.14-7.09 (m, 1 H), 6.96-6.93 (m, 1 H), 6.88-6.85 (m,
2 H), 4.69 (t, 1 H), 3.64 (q, 2 H), 2.68 (t, 2 H).
Compound 16: 1H-NMR (CDCl3, 300MHz): d 8.41 (s, 1 H), 7.89 (brs,
1 H), 7.81 (brs, 1 H), 7.62-7.57 (m, 1 H), 7.51-7.50 (m, 1 H), 7.43-7.36 (m, 5
H), 7.30-7.23 (m, 2 H), 7.20-7.17 (m, 5 H), 7.10-7.03 (m, 2 H), 6.87-6.84 (m,
2 H), 4.69 (t, 1 H), 3.63 (q, 2 H), 2.67 (t, 2 H).
Compound 17: 1H-NMR (CDCl3, 300MHz): d 8.43 (s, 1H), 7.38-7.49
(m, 9H), 7.35 (d, J= 8.0 Hz, 2H), 7.20-7.32 (m, 6H), 6.98 (d, J= 8.0 Hz, 2H),
6.93 (bs, 1H), 4.65 (bt, J= 5.6 Hz, 1H), 3.70 (q, J= 6.4 Hz, 2H), 2.77 (t, J =
6.4 Hz, 2H); LC-MS (ESI) m/z 527.2 (M+H).
Compound 18: 1H-NMR (CDCl3, 300MHz): d 8.46 (s, 1H), 7.25-7.51
(m, 15H), 7.03-7.16 (m, 4H), 4.68 (t, J= 5.4 Hz, 1H), 3.73 (q,J= 6.0 Hz,
2H), 2.82 (t,J= 6.3 Hz, 2H); LC-MS (ESI) m/z 527.2 (M+H).
Compound 19: 1H-NMR (CDCl3,400MHz): d 8.42 (s, 1H), 7.40-7.49
(m, 6H), 7.30-7.33 (m, 2H), 7.23-7.26 (m, 2H), 7.21 (d, J= 8.4 Hz, 2H), 6.96
(d, J= 8.4 Hz, 2H), 6.53 (bs, 1H), 5.26 (bt, J= 5.6 Hz, 1H), 4.66 (bt, J= 5.2
Hz, 1H), 3.59-3.72 (m, 6H), 2.75 (t, J= 6.4 Hz, 2H). LC-MS (ESI) m/z 512.2
(M+H).
Compound 20: LC-MS (ESI) m/z 563.2 (M+H).
Compound 21: LC-MS (ESI) /m/z 563.2 (M+H).
Compound 22: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.49-7.41
(m, 5H), 7.32-7.22 (m, 7H), 7.02-6.87 (m, 6H), 6.46 (brs, 1H), 4.67 (t, 1H),
3.69-3.66 (m, 6H), 3.17-3.13 (m, 4H), 2.74 (t, 2H); LC-MS (ESI) m/z 612.7
(M+H).
Compound 23: LC-MS (ESI) m/z 586.1 (M+H).
Compound 24: 1H-NMR (CD3OD, 300MHz): d 8.42 (s, 1 H), 7.26-
7.45 (m, 8 H), 7.17-7.14 (m, 2 H), 7.05-7.00 (m, 3 H), 6.90-6.93 (m, 2 H),
6.74-6.71 (m, 2 H), 3.75 (t, 2 H), 2.86 (t, 2 H); LC-MS (ESI) m/z 558.3
(M+H).
Coompound 25: LC-MS (ESI) m/z 467.1 (M+H).
Compound 26: LC-MS (ESI) m/z 408.1 (M+H).
Compound 27: 1H NMR (400 MHz, CDCl3): d 8.51 (s, 1H), 7.28-7.59
(m, 10H), 6.73 (d, J= 8.4 Hz, 2H), 6.53 (d, J= 8.4 Hz, 2H), 4.55 (t, J= 6.4
Hz, 2H), 3.56 (bs, 2H), 2.82 (t, J= 6.4 Hz, 2H). 8.52 (s, 1H), 7.28-7.57 (m,
14H), 7.15 (d,J= 8.4 Hz, 2H), 7.07-7.12 (m, 1H), 6.86 (d, J= 8.4 Hz, 2H),
6.59 (bs, 1H), 6.55 (bs, 1H), 4.59 (t, J= 6.4 Hz, 2H), 2.89 (t, J= 6.4 Hz, 2H);
LC-MS (ESI) m/z 527.2 (M+H).
Compound 28: LC-MS (ESI) m/z 540.2 (M+H).
Compound 29: LC-MS (ESI) m/z 594.1 (M+H).
Compound 30: LC-MS (ESI) m/z 551.1 (M+H).
Compound 31: LC-MS (ESI) m/z 568.2 (M+H).
Compound 32: LC-MS (ESI) m/z 571.1 (M+H).
Compound 33: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.50-7.39
(m, 5H), 7.31-7.23 (m, 8H), 6.94 (s, 1H), 6.91 (s, 1H), 6.32 (s, 1H), 4.65 (t,
1H), 3.68 (dd, 2H), 3.53 (t, 4H), 2.73 (t, 2H), 2.47 (t, 4H), 2.34 (s, 3H).
Compound 34: 1H NMR (300 MHz, CDCl3): 5 8.42 (s, 1H), 7.50-7.40
(m, 5H), 7.31-7.23 (m, 8H), 6.94 (s, 1H), 6.92 (s, 1H), 6.35 (s, IH), 4.64 (t,
1H), 3.71-3.64 (m, 4H), 3.54 (t, 4H), 2.73 (t, 2H), 2.64-2.56 (m, 6H); LC-MS
(ESI) m/z 585.7 (M+Na).
Compound 35: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.50-7.38
(m, 5H), 7.31-7.23 (m, 11H), 6.95 (s, 1H), 6.92 (s, 1H), 6.33 (s, 1H), 4.65 (t,
1H), 3.67-3.71 (m, 4H), 3.55-3.49 (m, 6H), 2.74 (t, 2H); LC-MS (ESI) m/z
633.7 (M+Na).
Compound 36: LC-MS (ESI) m/z 476.1 (M+H).
Compound 37: LC-MS (ESI) m/z 566.2 (M+H).
Compound 38: LC-MS (ESI) m/z 576.1 (M+H).
Compound 39: LC-MS (ESI) m/z 576.1 (M+H).
Compound 40: LC-MS (ESI) m/z 556.1 (M+H).
Compound 41: 1H NMR (400 MHz, CDCl3): d 8.42 (s, 1H), 7.35-7.48
(m, 11H), 7.23-7.30 (m, 6H), 7.01 (bs, IH), 6.91 (d, J= 8.4 Hz, 2H), 4.61 (bt,
J= 6.0 Hz, IH), 3.77 (s, 2H), 3.68 (q, J= 6.4 Hz, 2H), 2.73 (t, J= 6.4 Hz,
2H). LC-MS (ESI) m/z 525.2 (M+H).
Example 42: Synthesis of N,-phenyl-N-[2-(5,6,7,8-tetrahvdrobenzo[4,5]thieno[2,3-
d]pyrimidin-4-ylamino)ethyl]phenylurea (Compound 42)

2-Amino-4,5,6,7-tetrahydrobenzo[b]thiophen-3-yl cyanide (step a):
To a mixture of cyclohexanone (1.18 g), malononitrile (0.66 g) and sulphur
(0.40 g) in absolute ethanol (3 ml) was added triethylamine (2 mL). After
refluxed for 16 h, the reaction mixture was concentrated and the residue was
partitioned between water and ethyl acetate. The organic layer was
concentrated and the crude compound was purified by silica gel column
chromatography using a mixture of hexanes:ethyl acetate (4:1), to give 2-
amino-4,5,6,7-tetrahydrobenzo[b]thiophen-3-yl cyanide (0.94 g, 44%).
3,4,5,6,7,8-Hexahydrobenzo[4,5]thieno[2,3-d]pyrimidin-4-one(step
b): To a mixture of 2-amino-4,5,6,7-tetrahydrobenzo[6]thiophen-3-yl cyanide
(0.9 g) and formic acid (10mL) was added 0.1 mL HCl. After refluxed for 16
h, the reaction mixture was cooled and water (20 mL) was added. The
precipitated was filtered and washed thoroughly with water and hexanes to
give 3,4,5,6,7,8-hexahydrobenzo[4,5]tlueno[2,3-d]pyrimidin-4-one (0.8 g,
77%). 1H NMR (300 MHz, CDCl3): d 7.91 (s, 1H), 3.03-3.00 (m, 2H), 2.80-
2.77 (m, 2H), 1.89-1.83 (m, 4H).
4-Chloro-5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidine(step
c): A mixture of 3,4,5,6,7,8-hexahydrobenzo[4,5]thieno[2,3-d]pyrimidin-4-
one (0.8 g) and POCl3 (10 mL) was heated at 55-65°C for 3 h. Water was then
added followed by sodium bicarbonate. The resulting mixture was extracted
with ethyl acetate. The organic layer was concentrated and the crude
compound was purified by silica gel column chromatography using a mixture
of hexanes:ethyl acetate (20:1), to give 4-chloro-5,6,7,8-
tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidine (0.52 g, 60%). 1H NMR (300
MHz, CDCl3): d 8.69 (s, 1H), 3.10-3.07 (m, 2H), 2.88-2.86 (m, 2H), 1.89-1.92
(m, 4H). LC-MS (ESI) m/z 225.3 (M+H).
N-4-(4-Aminophenethyl)-5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-
d]pyrimidin-4-amine (step d): A mixture of 4-chloro-5,6,7,8-
terrahydrobenzo[4,5]thieno[2,3-d]pyrimidine (0.075 g) and 4-(2-
aminoethyl)aniline (0.055 g) in n-butanol (1 mL) was heated at 80°C for 16 h.
The reaction mixture was concentrated and the residue was partitioned
between water and ethyl acetate. The organic layer was concentrated and the
crude compound was purified by silica gel column chromatography using a
mixture of dichlorornethanermethanol (20:1), to give N-4-(4-aminophenethyl)-
5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidin-4-amine (0.088 g, 81%).
1HNMR (300 MHz, CDCl3): d 8.38 (s, 1H), 7.02 (d, 2H), 6.67 (d, 2H), 5.30
(bra, 1H), 3.77 (t, 2H), 2.86 (t, 2H), 2.76-2.59 (m, 4H), 1.81-1.83 (m, 4H).
LC-MS (ESI) m/z 325.5 (M+H).
N-Phenyl-N'-4-[2-(5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-
d]pyrimidin-4-ylamino)ethyl]phenylurea (step e, Compound 42): To N-4-
(4-aminophenethyl)-5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidin-4-
amine (0.085 g) in dichloromethane (3 mL) was added phenyl isocyanate
(0.04 g). The resulting mixture was stirred at room temperature for 16 h. The
precipitate was filtered and washed well with dichloromethane to give N-
phenyl-N'-4-[2-(5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidin-4-
ylamino)ethyl]phenylurea (0.075 g, 65%). 1H NMR (400 MHz, CDCl3): d
8.38 (s, 1H), 7.34-7.09 (m, 9H), 5.26-5.21 (m, 1H), 3.81 (dd, J= 6.4, 12.0 Hz,
2H), 2.93 (t,J= 6.8 Hz, 2H), 2.74-2.71 (m, 2H), 2.68-2.61 (m, 2H), 1.84-1.80
(m, 4H). LC-MS (ESI) m/z 444.2 (M+H).
Examples 43-183: Syntheses of Compounds 43-98,100, 107,115,118,119, 122-124,
126,. 146-148,151,152,160,161,163, 164,171-173,175,176, and 196-257
Compounds 43-98,100, 107, 115,118, 119,122-124, 126, 146-148,
151,152, 160, 161, 163, 164, 171-173, 175, 176, and 196-257 were prepared
in a manner similar to that described in Example 6 or 42. 1H NMR and MS
data of these compounds are listed below.
Compound 43: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 8.21-8.19
(m, 1H), 7.55-7.40 (m, 6H), 7.36-6.22 (m, 9H), 6.95 (s, 1H), 6.92 (s, 1H),
6.69-6.64 (m, 2H), 6.44 (s, 1H), 4.66 (t, 1H), 3.67 (brs, 8H), 2.74 (t, 2H); LC-
MS (ESI) m/z 618.7 (M+Na).
Compound 44: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.50-7.40
(m, 5H), 7.31-7.23 (m, 8H), 6.94 (s, 1H), 6.92 (s, 1H), 6.33 (s, 1H), 4.64 (t,
1H), 3.69-3.64 (m, 4H), 3.55-3.49 (m, 4H), 3.73 (t, 2H), 2.62-2.56 (m, 6H).
Compound 45: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.49-7.39
(m, 5H, 7.32-7.21 (m, 8H), 6.94 (s, 1H), 6.92 (s, 1H), 6.44 (s, 1H), 4.66 (t,
1H), 3.67 (td, 2H), 3.48-3.46 (m, 4H), 2.72 (t, 2H), 1.64 (brs, 6H).
Compound 46: 1HNMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.49-7.39
(m, 5H), 7.31-7.23 (m, 7H), 6.94 (s, 1H), 6.91 (s, 1H), 6.33 (s, 1H), 4.65 (t,
1H), 3.73-3.61 (m 8H), 3.55 (t, 4H), 2.73 (t, 2H), 2.66-2.58 (m, 6H); LC-MS
(ESI) m/z 629.7 (M+Na).
Compound 47: 1HNMR (300 MHz, CDCl3): d 8.39 (s, 1H), 7.49-7.42
(m, 5H), 7.38-7.34 (m, 2H), 7.26-7.23 (m, 4H), 7.08 (s, 1H), 7.05 (s, 1H), 6.90
(s, 1H), 6.87 (s, 1H), 6.84-6.81 (m, 2H), 6.67 (s, 1H), 6.64 (s, 1H), 5.27 (d,
1H), 4.77-4.75 (m, 1H), 4.69 (t, 1H), 3.72 (s, 3H), 3.66-3.61 (m, 2H), 3.01 (t,
2H), 2.64 (t, 2H); LC-MS (ESI) m/z 628.7 (M+H).
Compound 48: LC-MS (ESI) m/z 615.2 (M+H).
Compound 49: LC-MS (ESI) m/z 577.2 (M+H).
Compound 50: LC-MS (ESI) m/z 592.1 (M+H).
Compound 51: LC-MS (ESI) m/z 573.2 (M+H).
Compound 52: LC-MS (ESI) m/z 584.1 (M+H).
Compound 53: LC-MS (ESI) m/z 570.2 (M+H).
Compound 54: 1H NMR (400 MHz, CDCl3): d 8.41 (s, 1H), 7.42-7.53
(m, 9H), 7.24-7.31 (m, 7H), 7.22 (d, J= 8.0 Hz, 2H), 7.08 (d, J = 8.0 Hz, 2H),
6.48 (bs, 1H), 5.14 (bt, J= 5.6 Hz, 1H), 4.97 (bt, J= 5.6 Hz, 1H), 4.61 (d, J=
5.6 Hz, 2H), 4.40 (d, J= 5.6 Hz, 2H); LC-MS (ESI) m/z 526.2 (M+H).
Compound 55: 1H NMR (400 MHz, CDCl3): d 8.38 (s, 1H), 7.41-7.52
(m, 8H), 7.00-7.28 (m, 11H), 6.64 (bs, 1H), 5.12 (bt, .J= 5.6 Hz, lH),4.99(bt,
./= 5.6 Hz, 1H), 4.60 (d, J= 5.6 Hz, 2H), 4.37 (d, J= 5.6 Hz, 2H); LC-MS
(ESI) m/z 526.2 (M+H).
Compound 56: 1H NMR (400 MHz, CDCl3): d 8.42 (s, 1H), 7.45-7.43
(m, 2H), 7.36-7.32 (m, 4H), 7.28-7.15 (m, 9H), 7.04 (t, J= 7.6 Hz, 1H), 6.92-
6.88 (m, 4H), 4.74 (t, J= 6.0 Hz, 1H), 3.84 (s, 3H), 3.68 (dt, J = 6.0, 6.0 Hz, 2
H), 2.71 (t, J= 6.0 Hz, 2H); LC-MS (ESI) of Compound 56: m/z 556 (M+H).
Compound 57: 1H NMR (400 MHz, d6-DMSO): d 8.62 (s, 1H), 8.59 (s,
1H), 8.35 (s, 1H), 7.98 (d, J= 8.0 Hz, 2H), 7.57-7.37 (m, 2H), 7.25 (t, J= 7.6
Hz, 2H), 7.18 (d, J= 7.6 Hz, 2H), 7.00 (t, J= 7.6 Hz, 2H), 6.94 (t, J= 7.6 Hz,
1H), 3.75 (dt, J= 7.2,7.2 Hz, 2H), 2.87 (t, J = 7.2 Hz, 2 H); LC-MS (ESI) m/z
530 (M + 2 + H), 528 (M+H).
Compound 58: 1HNMR (300 MHz, d6-DMSO): 10.15 (s, 1H), 8.64 (s,
1H), 8.56 (s, 1H), 8.36 (s, 1H), 7.43 (d, J= 8.4 Hz, 2H), 7.45-7.23 (m, 13H),
6.96 (d, J= 8.4 Hz, 2H), 6.95 (t, J= 8.4 Hz, 1H), 5.12 (t, J= 5.1 Hz, 1H), 3.60
(dt, J= 5.1, 5.1 Hz, 2H), 2.68 (t, J= 5.1 Hz, 2 H), 2.09 (s, 3H); LC-MS (ESI)
m/z 583 (M+H).
Compound 59: 1H NMR (400 MHz, CDCl3): d.42 (s, 1H), 7.79 (bra,
2H), 7.45-7.42 (m, 2H), 7.32-7.29 (m, 3H), 7.21-7.17 (m, 7H), 6.99-6.94 (m,
2H), 6.85-6.82 (m, 4H), 4.78 (t, J= 5.6 Hz, 1H), 3.70 (s, 3H), 3.63 (bra, 2H),
2.66 (t, J= 5.6 Hz, 2 H); LC-MS (ESI) m/z 556 (M+H).
Compound 60: 1H NMR (400 MHz, CDCl3): d 8.88 (brs, 1H), 8.42 (s,
1H), 7.61 (brs, 1H), 7.58 (brs, 1H), 7.48-7.46 (m, 2H), 7.41 (d, J= 7.6 Hz,
2H), 7.31 (t,J= 7.6 Hz, 2H), 7.22 (d, J= 8.4 Hz, 2H);7.19-7.16 (m, 3H), 7.11
(t, J= 7.6 Hz, 1H), 6.98-6.96 (m, 9H), 6.92 (d, J= 8.4 Hz, 1H), 6.73-6.71 (m,
2H), 4.72 (t, J= 5.6 Hz, 1H), 3.68 (dt, J= 5.6, 5.6 Hz, 2H), 2.73 (t, J= 5.6 Hz,
2 H); LC-MS (ESI) m/z 542 (M+H).
Compound 61: 1H NMR (300 MHz, CDCl3): d 8.43 (s, 1H), 7.47-7.39
(m, 5H), 7.34-7.29 (m, 4H), 7.25-7.22 (m, 5H), 7.03-6.93 (m, 4H), 6.88 (s,
1H), 6.85 (s, 1H), 4.67 (t, 1H), 3.71-3.65 (m, 2H), 2.74 (t, 2H); LC-MS (ESI)
m/z 544.3 (M+H).
Compound 62: 1H NMR (300 MHz, CDCl3): d 8.40 (s, 1H), 8.06 (s,
1H), 7.90 (s, 1H), 7.44-7.36 (m, 5H), 7.32-7.28 (m, 3H), 7.20 -7.14(m, 5H),
6.93-6.83 (m, 4H), 4.71 (t, 1H), 3.64-3.58 (m, 2H), 2.65 (t, 2H); LC-MS (ESI)
m/z 562.2 (M+H).
Compound 63: 1HNMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.49-7.39
(m, 6H), 7.31-7.28 (m, 2H), 7.24-7.19 (m, 6H), 7.02-6.98 (m, 2H), 6.94 (d,
2H), 6.49-6.46 (m, 1H), 4.69 (t, 1H), 3.71-3.65 (m, 2H), 2.73 (t, 2H); LC-MS
(ESI) m/z 562.3 (M+H).
Compound 64: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.56-7.55
(m, 2H), 7.48-7.40 (m, 6H), 7.32-7.29 (m, 2H), 7.25-7.22 (m, 4H), 7.19-7.16
(m, 2H), 7.12-7.08 (m, 3H), 6.93-6.91 (m, 2H), 4.65 (t, 1H), 3.69-3.65 (m,
2H), 2.72 (t, 2H); LC-MS (ESI) m/z 583.3 (M+H).
Compound 65: 1HNMR (300 MHz, CDCl3): d 8.42 (s, 1H), 7.46-7.37
(m, 5H), 7.30-7.27 (m, 2H), 7.25-7.21 (m, 7H), 7.12 (s, 1H), 6.98 (s, 1H),
6.90-6.83 (m, 4H), 4.66 (t, 1H), 3.85-3.82 (m, 4H), 3.69-3.62 (m, 2H), 3.10-
3.07 (m, 4H), 2.70 (t, 2H); LC-MS (ESI) m/z 583.3 (M+H).
Compound 66: LC-MS (ESI) m/z 572.2 (M+H).
Compound 67: 1H-NMR (300 MHz, CDCl3): 8 8.42 (s, H),7.36-7.43
(m, 4H), 7.23-7.31 (m, 10H), 4.96-5.00 (t, NH), 4.64-4.67 (t, NH), 3.64-3.70
(q, 2H), 3.20-3.25 (q, 2H), 2.70-2.74 (t, 2H), 1.33-1.57 (m, 2H), 0.91-0.94 (t,
3H); LC-MS (ESI) m/z 492.7 (M+H).
Compound 68: 1H-NMR (300 MHz, CDCl3):d 8.34 (s, H), 7.40-7.47
(m, 4H), 7.25-7.38 (m, 10H), 4.63-4.67 (t, NH), 3.66-3.72 (q, 2H), 3.24-3.29
(q, 2H), 2.27-2.76 (t, 2H), 1.52-1.57 (t, 2H), 1.25-1.29 (m, 4H), 0.88-0.91 (t,
3H); LC-MS (ESI) m/z 518.7 (M+H).
Compound 69: 1H-NMR (300 MHz, CDCl3): d 8.57 (s, H), 7.57-7.62
(m, 4H), 7.39-7.47 (m, 10H), 4.65-5.30 (t, NH), 3.66-3.72 (q, 2H), 3.22-3.29
(q, 2H), 2.72-2.76 (t, 2H), 1.49-1.54 (m, 2H), 1.26-1.29 (m, 6H), 0.85-0.89 (t,
3H); LC-MS (ESI) m/z 532.7 (M+H).
Compound 70: 1H-NMR (300 MHz, CDCl3):d 8.41 (s, H), 7.38-7.46
(m, 4H),7.18-7.31 (m, 10H), 4.07-4.18 (m, H), 3.62-3.69 (q, 2H), 2.68-2.72 (t,
2H), 1.94-2.04 (m, 2H), 1.53-1.77 (m, 4H), 1.32-1.46 (m, 2H), 1.34-1.39 (t,
2H).
Compound 71: 1H-NMR (300 MHz, CDCl3):d 8.56 (s, H), 7.38-7.44
(m, 4H), 7.17-7.30 (m, 10H), 4.64-4.68 (t,NH), 3.60-3.68 (m, 2H), 2.62-2.73
(t, 2H), 1.93-2.17 (m, 1H), 1.56-1.70 (m, 4H), 1.26-1.41 (m, 4H), 1.06-1.17 (m,
2H).
Compound 72: 1H-NMR (300 MHz, CDCl3):d 8.42 (s, H) 7.43-7.46
(m, 4H), 7.22-7.41 (m, 10H), 6.88-6.92 (q,4H), 6.61 (s, H), 6.49 (s, H), 3.80
(s, H), 3.67-3.68 (q, 2H), 2.71-2.75 (t, 2H).
Compound 73: 1H-NMR (300 MHz, CDCl3):d 8.40 (s, H),7.28-7.43
(m, 12H), 7.16 (s, H), 6.85-6.90 (d,2H), 6.62 (s, 2H), 5.82-5.84 (d, 2H), 4.64-
4.68 (t, H), 3.59-3.66 (q, 2H), 2.64-2.68 (t, 2H).
Compound 74: LC-MS (ESI) m/z 543.0 (M+H).
Compound 75: LC-MS (ESI) m/z 551.2 (M+H).
Compound 76: 1H NMR (300 MHz, CDCl3): 9.45 (s, 1H), 8.46 (s, 1H),
7.71-7.68 (m, 1H), 7.47-7.29 (m, 8H), 7.23-7.07 (m, 7H), 6.85 (bre, 1H), 6.68
(brs, 1H), 6.52 (d, J = 3.6 Hz, 1H), 3.95 (dt, J= 6.6, 6.6 Hz, 2H), 3.01 (t, J=
6.6 Hz, 2 H); LC-MS (ESI) m/z 544 (M+H).
Compound 77: 1H NMR (400 MHz, d6-DMSO): d 8.65 (s, 1H), 8.61 (s,
1H), 8.40 (s, 1H), 8.29-8.26 (m, 2H), 7.46-7.44 (m, 2H), 7.37-7.33 (m, 7H),
7.28-7.24 (m, 2H), 7.03 (d, J= 8.4 Hz, 2H), 6.97-6.93 (m, 1H), 5.48 (t, J= 6.4
Hz, 1H), 3.62 (dt, J= 6.4,6.4 Hz, 2H), 2.73 (t, J= 6.4 Hz, 2 H); LC-MS (ESI)
7M/z571(M+H).
Compound 78: 1H NMR (400 MHz, d6-DMSO): 9.78 (s, 1H), 8.63 (s,
1H), 8.58 (s, 1H), 8.35 (s, 1H), 7.45-7.24 (m, 12H), 6.97-6.90 (m, 4H), 6.78-
6.74 (m, 2H), 5.14 (t, J= 6.0 Hz, 1H), 3.61 (dt, J = 6.0, 6.0 Hz, 2H), 2.67 (t, J
= 6.0 Hz, 2 H); LC-MS (ESI) m/z 542 (M+H).
Compound 79: 1H NMR (300 MHz, d6-DMSO): 8.62 (s, 1H), 8.59 (s,
1H), 8.28 (s, 1H), 8.10 (brs, 1H), 7.78 (d, J= 7.2 Hz, 2 H), 7.52-7.37 (m, 8H),
7.28-7.17 (m, 4H), 6.94 (t,J= 7.2 Hz, 1H), 3.70 (td, J= 7.2, 7.2 Hz, 2 H),
2.87 (t, J= 7.2 Hz, 2 H); LC-MS (ESI) m/z 450 (M+H).
Compound 80: 1H NMR (300 MHz, d6-DMSO): 10.12 (s, 1H), 8.64 (s,
1H), 8.57 (s, 1H), 8.36 (s, 1H), 7.73-7.66 (m, 2H), 7.46-7.24 (m, 12H), 7.02-
6.91 (m, 4H), 5.21 (t, J = 5.4 Hz, 1H), 3.60 (dt, J = 5.4, 5.4 Hz, 2H), 2.67 (t, J
= 5.4 Hz, 2 H), 2.05 (s, 3H); LC-MS (ESI) w/z 583 (M + H).
Compound 81: 1H NMR (400 MHz, CDCl3): 8.40 (s, 1H), 8.18 (d, J= 8.0 Hz, 1H), 7.48-7.26 (m, 8H), 7.20 (d, J= 8.0 Hz, 2H), 7.10 (t, J= 7.2 Hz,
1H), 6.91 (d, J= 7.2 Hz, 2H), 6.14 (t, J= 5.1 Hz, 1H), 3.86 (dt, J = 5.1, 5.1
Hz, 2H), 2.96 (t, J= 5.1 Hz, 2 H), 0.27 (s, 9H); LC-MS (ESI) m/z 546 (M +
H).
Compound 82: 1H NMR (300 MHz, CDCl3): d.41 (s, 1H), 8.01 (d, J =
7.2 Hz, 2H), 7. 51-7.33 (m, 8H), 7.26-7.24 (m, 3H), 7.16-7.11 (m, 1H), 6.50
(s, 1H), 6.48 (s, 1H), 5.89 (t, J= 6.6 Hz, 1H), 3.90 (dt, J= 6.6, 6.6 Hz, 2H),
2.99 (t, J= 6.6 Hz, 2 H); LC-MS (ESI) m/z 484 (M + H).
Compound 83: LC-MS (ESI) m/z 421.1 (M + H).
Compound 84: LC-MS (ESI) m/z 483.1 (M + H).
Compound 85: LC-MS (ESI) m/z 421.1 (M + H).
Compound 86: LC-MS (EST) m/z 483.1 (M + H).
Compound 87: LC-MS (ESI) m/z 435.2 (M + H).
Compound 88: LC-MS (EST) m/z 471.1 (M + H).
Compound 89: LC-MS (ESI) m/z 457.1 (M + H).
Compound 90: LC-MS (ESI) m/z 443.1 (M + H).
Compound 91: 1HNMR (300 MHz, CDCl3): d 8.44 (s, 1H), 7.97-7.92
(m, 1H), 7.47-7.38 (m, 6H), 7.34-7.28 (m, 4H), 7.24-7.20 (m, 3H), 7.05-7.02
(m, 1H), 6.97 (s, 1H, NH), 6.94 (s, 1H, NH), 6.84-6.80 (m, 1H), 4.70-4.66 (t
1H), 3.72-3.66 (q, 2H), 2.76-2.72 (t, 2H); LC-MS (ESI) m/z 562.3 (M+H).
Compound 92: 1HNMR (300 MHz, CDCl3): d 8.43 (s, 1H), 8.06-8.03
(m, 1H), 7.46-7.39 (m, 5H), 7.32-7.22 (m, 7H), 6.97-6.94 (m, 2H), 6.86-6.81
(m, 2H), 4.69-4.66 (t, 1H, NH), 3.72-3.66 (q, 2H), 2.75-2.74 (t, 2H); LC-MS
(ESI) m/z 562.3 (M+H).
Compound 93: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H) , 7.50 (s,
1H), 7.44-7.39 (m, 5H), 7.30-7.24 (m, 3H), 7.22-7.16 (m, 6H), 6.89-6.87 (d, J
= 8.4 Hz, 2H), 7.22-7.16 (m, 6H),, 6.89-6.87 (d, J= 8.4 Hz, 2H), 4.69-4.68 (t,
1H, NH), 3.66-3.62 (q, 2H), 2.71-2.67 (t, 2H); LC-MS (ESI) m/z 560.2
(M+H).
Compound 94: 1HNMR (300 MHz, CDCl3): d 8.40 (s, 1H), 7.85-7.84
(m, 1H), 7.43-7.33 (m, 6H), 7.26-7.17 (m, 6H), 7.04-7.01 (m, 1H), 6.85-6.79
(m, 4H), 4.66-4.62 (t, 1H, NH), 3.65-3.59 (q, 2H), 2.66-2.61 (t, 2H); LC-MS
(ESI) m/z 562.3 (M+H).
Compound 95: 1HNMR (300 MHz, CDCl3): d 8.41 (s, 1H), 7.43-7.38
(m, 6H), 7.30-7.27 (m, 2H), 7.24-7.19 (m, 5H), 7.09 (s, 1H), 6.89-6.86 (d, /=
7.8 Hz, 2H), 6.73 (s, 2H), 4.68-4.67 (t, 1H, NH), 3.80 (s, 3H), 3.79 (s, 3H),
3.65-3.61 (q, 2H), 2.70-2.66 (t, 2H); LC-MS (ESI) m/z 586.2 (M+H).
Compound 96: 1H-NMR (300 MHz, CDCl3): d 8.43 (s, H), 8.1 l-8.25(t
H), 7.11-7.26 (m, 17H), 4.67-4.70 (t, H), 3.61-3.67 (q, 2H), 2.64-2.69 (t, 2H);
LC-MS (ESI) m/z 544.7 (M + H).
Compound 97: 1H-NMR (300 MHz, CDCl3):5 10.01 (s, H), 8.70-8.71
(d, H), 8.67 (s, H), 8.44-8.58 (d, H), 7.17-7.46 (m, 14H), 4.66-4.70 (t, NH),
3.67-3.73 (q, 2H), 2.74-2.78 (t, 2H).
Compound 98: 1H-NMR (300 MHz, CDCl3): d 8.41 (s, H), 7.17-7.27
(m,14 H), 7.01-7.04 (d, 2H), 6.82-6.84 (d, 2H), 4.64-4.68 (t, NH), 3.59-3.65
(q, 2H), 2.64-2.68 (t, 2H), 2.23 (s, 3H).
Compound 100: 1H-NMR (300 MHz, CDCl3): d 8.41 (s, H), 7.47-7.48
(m, 4 H), 7.45-7.47 (m, 10H), 7.43-7.44 (d, 2H), 7.42-7.43 (d, 2H), 3.65-3.68
(q, 2H), 2.93 (s, 6H), 1.25-2.17 (t, 2H).
Compound 107: 1H NMR (400 MHz, d6-DMSO): d 8.61 (s, 1H), 8.59
(s, 1H), 8.36 (s, 1H), 8.32 (t, J= 6.8 Hz, 1H), 7.80-7.78 (m, 2H), 7.55-7.49
(m, 3H), 7.44-7.37 (m, 4H), 7.26 (d, J= 8.4 Hz, 2H), 7.19 (d, J= 8.4 Hz, 2H),
6.94 (t, J=7.6 Hz, 1H), 4.22 (q, J= 7.2 Hz, 2H), 3.77 (td, J = 6.8, 6.8 Hz,
2H), 2.87 (t, J= 6.8 Hz, 2H), 2.87 (t, J= 6.8 Hz, 2H), 1.09 (t,J= 7.2 Hz, 3H);
LC-MS (ESI) m/z 522.7 (M + H).
Compound 115: 1H NMR (300 MHz, CD3OD): d 8.29 (s, 1H), 7.66 (s,
2H), 7.38-7.47 (m, 6H), 7.21-7.32 (m, 7H), 7.04 (brs, 4H), 6.93 (s, 1H), 6.90
(s, 1H), 3.67 (t, 2H), 3.41 (s, 2H), 2.72 (t, 2H), 2.26 (s, 6H).
Compound 118: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H),
7.39-7.46 (m, 6H), 7.21-7.31 (m, 9H), 6.99 (d, 2H), 6.94 (s, 1H), 6.91 (s, 1H),
4.66 (t, 1H), 3.67 (dt, 2H), 3.45 (s, 3H), 2.72 (t, 2H), 2.44 (br s, 8H), 2.27 (s,
3H).
Compound 119: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H),
7.35-7.38 (m, 6H), 7.22-7.31 (m, 9H), 7.11 (dd, 2H), 7.01 (d, 1H), 6.95 (s,
1H), 6.92 (s, 1H), 4.65 (t, 1H), 3.68 (dt, 2H), 3.38 (s, 2H), 2.73 (t, 2H), 2.22 (s,
6H).
Compound 122: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H),
7.38-7.47 (m, 6H), 7.21-7.31 (m, 8H), 7.03 (dd, 2H), 6.98 (d, 2H), 6.95 (s,
1H), 6.92 (s, 1H), 4.66 (t, 1H), 3.66 (dt, 2H), 3.45 (s, 2H), 2.73 (t, 2H), 2.44
(brs,8H),2.25(s,3H).
Compound 123: 1H NMR (300 MHz, CDCl3): d 8.41 (s, 1H), 8.00 (dd,
1H), 7.8-7.47 (m, 5H), 7.21-7.32 (m, 7H), 7.22 (dd, 2H), 6.92 (d, 2H), 6.90
(d, 2H), 6.53 (s, 1H), 4.64 (t, 1H), 3.68 (dt, 2H), 3.38 (s, 2H), 2.73 (t, 2H),
2.02 (s, 6H); LC-MS (ESI) m/z 583.7 (M+H).
Compoudn 124: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 8.03 (dd,
1H), 7.39-7.50 (m, 6H), 7.19-7.34 (m, 8H), 7.05 (dd, 1H), 6.94-6.97 (m, 2H),
6.90 (dd, 1H), 6.53 (s, 1H), 4.67 (t, 1H), 3.68 (dt, 2H), 3.50 (s, 2H), 2.73 (t,
2H), 2.33 (brs, 4H), 1.41 (brs, 6H).
Compound 126: 1H NMR (300 MHz, CDCl3): d 8.42 (s, 1H), 8.01 (dd,
1H), 7.40-7.49 (m, 5H), 7.23-7.34 (m, 9H), 7.10 (dd, 1H), 6.95-7.00 (m, 3H),
6.41 (s, 1H), 4.67 (t, 1H), 3.70 (dt, 2H), 3.54 (s, 2H), 2.76 (t, 2H), 2.40 (bre,
8H), 2.22 (s, 3H).
Compound 146: LC-MS (ESI) m/z 527.2 (M+H).
Compound 147: LC-MS (ESI) m/z 527.1 (M+H).
Compound 148: LC-MS (ESI) m/z 527.1 (M+H).
Compound 151: LC-MS (ESI) m/z 528.2 (M+H).
Compound 152: LC-MS (ESI) m/z 528.1 (M+H).
Compound 160: LC-MS (ESI) m/z 531.2 (M+H).
Compound 161: LC-MS (ESI) m/z 531.2 (M+H).
Compound 163: LC-MS (ESI) m/z 547.1 (M+H).
Compound 164: LC-MS (ESI) m/z 547.1 (M+H).
Compound 171: 1H NMR (400 MHz, CDCl3): d 8.44 (s, 1H), 7.53 (d, J
= 7.6 Hz, 2H), 7.33-7.48 (m, 9H), 7.22-7.24 (m, 3H), 7.13 (t, J= 7.6 Hz, 1H),
6.87 (s, 1H), 4.76 (bt, J= 6.0 Hz, 1H), 3.70 (q, J= 6.4 Hz, 2H), 2.95 (t, J = 6.4
Hz, 2H); LC-MS (ESI) m/z 533.2 (M+H).
Compound 172: 1H NMR(CDCl3): d 8.20 (s, 1H), 7.44-7.18 (m, 15H),
7.02 (d, J= 8.4 Hz, 2H), 6.95 (d, J= 8.4Hz, 2H), 3.67 (t, J= 6.9 Hz, 2H), 2.75
(t, J = 6.9 Hz, 2H); LCMS-ESI (m/z): 525 [M+H+].
Compound 173: 1HNMR (DMSO-d6) : d 8.63 (s, 1H), 8.61 (s, 1H)
8.17 (s, 1H), 7.43-7.34 (m, 4H), 7.25 (t, 2H, J=7.2 Hz), 7.13 (d, 2H, J=8.4
Hz), 6.93 (t,1H, J=7.5 Hz), 6.79 (t, 1H, J= 5.4 Hz), 3.62 (q, 2H, J=8.4 Hz),
2.81 (t, 2H, J=8.1 Hz), 2.70-2.61 (m, 4H), 1.82-1.73 (m, 2H).
Compound 175: 1H NMR (400 MHz, CDCl3) d 8.49 (s, 1H),7.62-
7.60 (m, 2H), 7.53 (d,J= 7.2 Hz, 2H), 7.41-7.20 (m, 14H), 7.11 (d, J= 8.0
Hz, 2H), 7.03 (t,J= 7.2 Hz, 2H), 5.59 (brs, 1H), 3.89 (td, J = 6.8, 6.8 Hz, 2H),
2.94 (t, J= 6.8 Hz, 2H); LC-MS (ESI) m/z 526.4 (M + H).
Compound 176: 1H NMR (400 MHz, d6-DMSO) d 8.61 (s, 1H), 8.58
(s, 1H), 8.33 (s, 1H), 8.00 (d, J= 7.2 Hz, 2H), 7.98 (brs, 1H), 7.54 (t, J= 7.6
Hz, 2H), 7.48-7.42 (m, 4H), 7.38 (d, J= 7.6 Hz, 2H), 7.26 (t, J= 7.6 Hz, 2H),
6.94 (t, J= 7.6 Hz, 1H), 3.72 (brs, 2H), 2.90 (t, J = 7.2 Hz, 2H); LC-MS (ESI)
m/z 450.2 (M + H).
Compound 196: 1H-NMR (400 MHz, DMSO-d6): d 8.62 (d, J=1 1.6
Hz, 2H), 8.29 (s, 1H), 7.44 (d, J=6.8Hz, 2H), 7.38 (d, J=6.8Hz, 2H), 7.25 (t,
J= 6.8 Hz, 2H), 7.16 (d, J=7.2 Hz, 2H), 6.95 (t, J=7.2 Hz, 1H), 6.69 (t, J= 7.2Hz, 1H), 3.67 (dd, J=6.8 Hz, 14 Hz, 2H), 3.00 (t, J= 6.8Hz, 2H), 2.93 (t, J=6.8 Hz, 2H), 2.85 (t, J=7.2 Hz, 2H), 2.42 (m, 2H); MS (ESI) m/z 430.6 (M
+ H).
Compound 197: 1H-NMR (300 MHz, CDCl3): d 8.44 (s, H), 8.15-8.18
(d, H), 7.47-7.60 (m, 7H), 7.26-7.37 (m, 10H), 4.65-4.69 (t, NH), 3.65-3.71 (q,
2H), 2.71-2.75 (t,2H).
Compound 198: 1H-NMR (300 MHz, CDCl3): d 8.41 (s, H), 7.38-
7.47(m, 12H), 7.27-7.28 (m, 2H), 4.64-4.67 (t, H), 3.64-3.68 (q, 2H), 3.36-
3.40 (t, 2H), 2.68-2.71 (t, 2H), 2.58-2.59 (t, 2H), 2.35 (s, 6H).
Compound 199: 1H-NMR (300 MHz, CDCl3): d 8.38 (s, H), 7.33-
7.46(m, 12H), 7.29-7.30 (m, 2H), 4.64-4.67 (t, H), 3.63-3.72 (m, 4H), 3.39-
3.40 (m, 2H), 2.63-2.68 (m, 2H); LC-MS (ESI) m/z 492.7 (M + H).
Compound 200: 1H-NMR (300 MHz, CDCl3): d 8.43 (s, H), 7.17-7.48
(m, 14H), 6.87-6.90 (d, 2H), 5.84-5.88 (t, H), 4.65-5.29(t, H), 4.14-4.21 (q,
2H), 4.05-4.07 (d, 2H), 3.62-3.69 (q, 2H), 2.67-2.71 (t, 2H), 1.22-1.24 (t, 3H).
Compound 201: 1H-NMR (300 MHz, CDCl3): d 8.41 (s, H), 7.37-7.42
(m, 4H), 7.20-7.26 (m, 8H), 6.89-6.92 (d, 2H), 4.64-4.68 (t, NH), 3.64-3.68 (q,
2H), 2.62-2.63 (t, 2H), 2.57-2.61 (m, H), 0.65-0.72 (q, 2H), 0.59-0.63 (t, 2H).
Compound 202: 1H NMR (400 MHz, d6-DMSO) d 8.62 (s, 1H), 8.60
(s, 1H), 8.35 (s, 1H), 8.14-8.11 (m, 2H), 7.56-7.36 (m, 7H), 7.28-7.20 (m,
4H), 6.97-6.92 (m, 1H), 6.61 (t,J= 6.4 Hz, 1H), 5.58 (t, J = 6.0 Hz, 1H), 4.44
(d,y= 6.0 Hz, 2H), 3.79 (td, J = 6.4, 6.4 Hz, 2H), 2.89 (t, J= 6.4 Hz, 2H); LC-
MS (ESI) m/z 504.7 (M + H).
Compound 203: 1H NMR (400 MHz, CDCl3) d 8.44 (s, 1H), 7.50
(bra, 1H), 7.49 (bra, 1H), 7.36-7.29 (m, 6H), 7.25-7.21 (m, 4H), 7.19 (d, J =
8.4 Hz, 2H), 7.04-7.00 (m, 1H), 6.93 (d, J= 8.4 Hz, 2H), 5.00 (t, J= 6.4 Hz,
1H), 3.72 (td, J = 6.4, 6.4 Hz, 2H), 2.77 (t, J= 6.4 Hz, 2H); LC-MS (ESI) m/z
450.6 (M+H).
Compound 204: 1HNMR (CDCl3): d 8.27 (s, 1H), 8.15 (d, J = 7.2 Hz,
1H), 7.74 (d,J= 9.0 Hz, 2H), 7.44-7.27 (m, 6H), 7.18 (d, J= 8.4 Hz, 2H),
7.03 (t,J= 7.2 Hz, 1H), 6.97 (d, J= 8.7 Hz, 2H), 6.83 (s, 1H), 3.86 (s, 3H),
3.81 (t,J= 6.9 Hz, 2H), 3.37 (brs, 2H), 2.96 (t,J= 6.9 Hz, 2H); LCMS-ESI
(m/z): 480 [M+H+].
Compound 205: 1HNMR (DMSO): d 9.93 (s, 1H), 8.23 (s, 1H), 8.01
(brs, 1H), 7.61 (d, J= 6.3 Hz, 2H), 7.43 (d, J= 5.4 Hz, 2H), 7.37 (d, J= 6.3
Hz, 2H), 7.26 (t, J= 6.0 Hz, 2H), 7.18 (d, J= 6.3 Hz, 2H), 7.10(s, 1H), 6.95 (t,
J = 5.4 Hz, 1H), 6.88 (d,J= 6.6 Hz, 2H), 3.70 (t, J= 5.4 Hz, 2H), 3.27 (brs,
2H), 2.86 (t,J= 5.4 Hz, 2H); LCMS-ESI (m/z): 466 [M+H+].
Compound 206: 1H NMR (CD3OD): d 8.20 (s, 1H), 8.01 (zrs, 1H),
7.74 (d, J= 8.7 Hz, 2H), 7.40 (d, J= 8.4 Hz, 2H), 7.34 (d, J= 8.7 Hz, 2H),
7.26 (t, J= 7.8 Hz, 2H), 7.19 (d, J= 8.4 Hz, 2H), 7.04 (d, J = 9.0 Hz, 2H),
6.99 (s, 1H), 6.98-6.96 (m, 1H), 4.15( t, J= 5.4 Hz, 2H), 3.78 (t, J= 7.2 Hz,
2H), 2.91 (t, J= 12 Hz, 2H), 2.78 (t, J= 5.4 Hz, 2H), 2.35 (s, 6H); LCMS-
ESI (m/z): 537 [M+H+].
Compound 207: LCMS-ESI (m/z): 537.1 [M+H+].
Compound 208: JH-NMR (400 MHz, DMSO-d6): d 8.61(d, J = 10.8 Hz,
2H), 8.32 (s, 1H), 7.44 (d, J =4.0 Hz, 2H), 7.38 (d, J =4.0 Hz, 2H), 7.26 (t, J
=7.6 Hz, 2H), 7.16 (d, J =4.0 Hz, 2H), 6.95 (t, J=7.2 Hz, lH),6.66(s, 1H),
4.64 (s, 2H), 4.09 (q, J=7.2 Hz, 2H), 3.35 (m, 4H), 2.95 (s, 2H), 2.85 (t, J
=7.2 Hz, 2H), 1.20 (t, J=7.2 Hz, 2H); MS (ESI) m/z 517.7 (M + H).
Compound 209: 1H NMR (400 MHz, CDCl3): d 9.89 (br s, 1H), 8.42
(s, 1H), 8.03 (d, 1H), 8.01 (s, 2H), 7.47 (dt, 1H), 7.41 (dt, 2H), 7.37 (dd, 2H),
7.24-7.34 (m, 3H), 7.04 (dd, 1H), 6.95 (dt, 1H), 6.47 (s, 1H), 5.90 (t, 1H),
3.89 (dt, 2H), 3.38 (s, 2H), 2.99 (t, 2H), 2.04 (s, 6H); LC-MS (ESI) m/z 541.3
(M + H).
Compound 210: LCMS-ESI (m/z): 542.1 [M+H+].
Compound 211:1H NMR (300 MHz, CD3OD): d 9.89 (br s, 1H), 8.42
(s, 1H), 7.78-7.82 (m, 1H), 7.78 (s, 2H), 7.43 (dt, 2H), 7.37 (t, 1H), 7.34 (d,
2H), 7.25 (d, 1H), 7.22 (d, 2H), 7.13 (d, 1H), 7.11 (dd, 2H), 6.97 (dt, 1H), 3.79
(t, 2H), 3.42 (s, 2H), 2.95 (t, 2H), 2.11 (s, 6H); LC-MS (ESI) m/z 507.3 (M +
H).
Compound 212: LCMS-ESI (m/z): 507.1 [M+H+].
Compound 213: 1H NMR (300 MHz, d6-DMSO) d 8.63 (s, 1H), 8.61
(s, 1H), 8.38 (s, 1H), 7.47-7.43 (m, 5H), 7.36-7.24 (m, 6H), 7.03-6.92 (m,
3H), 5.43 (t,y= 6.0 Hz, 1H), 3.64 (td, J = 6.0, 6.0 Hz, 2H), 2.74 (t, J= 6.0 Hz,
2H); LC-MS (ESI) m/z 484.7 (M + H).
Compound 214: 1H-NMR (300 MHz, CDCl3): d 8.40 (s, H), 7.36-7.45
(m, 4H), 7.18-7.28 (m, 8H), 6.85-6.87 (d, 2H), 4.27-4.34 (m, H), 3.63-3.66 (q,
2H), 2.64-2.67 (t, 2H), 2.18-2.29 (m, 2H), 1.74-1.84 (m, 2H), 1.55-1.63 (m,
2H).
Compound 215: 1H-NMR (300 MHz, CDCl3): d 8.33 (s, H), 7.81-7.82
(d, 2H), 7.16-7.60 (m, 9H), 6.91 (s, H), 3.81-3.85 (t, 2H), 3.63-3.67 (m, 2H),
3.55-3.58 (m, 2H), 2.95-3.39 (t, 2H).
Compound 216: 1H-NMR (300 MHz, CDCl3): d 8.38 (s, H), 7.80-
7.81(d, 2H ), 7.13-7.44 (m, 9H), 6.86(s, H), 3.82-3.87(t, 2H), 3.66-3.69 (t,
4H), 3.34-3.39 (q, 2H), 2.92-2.97 (t, 2H), 2.48-2.56 (m, 4H); LC-MS (ESI)
m/z 487.7 (M + H).
Compound 217: 1H-NMR (300 MHz, CDCl3): d 8.40 (s, H), 7.38-7.49
(m, 3H), 7.22-7.30 (m, 6H), 5.87-5.90(t, NH), 5.24-5.27 (t, NH), 3.85-3.90 (q,
2H), 3.58-3.68 (m, 4H), 2.96-2.99 (t, 2H).
Compound 218: 1H-NMR (300 MHz, CDCl3): d 8.40 (s, H), 7.37-7.47
(m, 3H), 7.21-7.32 (m, 6H), 5.87-5.90(t, NH), 5.24-5.27 (t, NH), 3.84-3.91(q,
2H), 3.66-3.69(t, 4H), 3.33-3.39 (q, 2H), 2.95-2.99 (t, 2H), 2.50-2.54 (t, 2H),
2.17-2.47 (t,4H).
Compound 219: 1H NMR (400 MHz, CDCl3) d 8.46 (s, 1H), 8.22
(ddd, J= 7.6, 2.0, 2.0 Hz, 1H), 8.12 (s, 1H), 7.60-7.54 (m, 2H), 7.40-7.21 (m,
12H), 7.17 (d, J= 8.4 Hz, 2H), 7.07 (t, J= 7.6 Hz, 1H), 6.83 (d, J= 8.4 Hz,
2H), 4.32 (t, J= 5.6 Hz, 2H), 3.76 (td, J = 5.6, 5.6 Hz, 2H), 2.71 (t, J= 5.6 Hz,
2H); LC-MS (ESI) m/z 571.0 (M + H).
Compound 220: LC-MS (ESI) m/z 402.0 (M + H).
Compound 221: lH NMR (CDCl3): d 8.30 (s, 1H), 7.44-7.30 (m, 9H),
7.19 (d,J= 6.3 Hz, 2H), 7.09-7.01 (m, 2H), 7.00 (s, 1H), 6.93-6.89 (m, 1H),
3.88 (s, 3H), 3.82 (t, J= 6.9 Hz, 2H), 3.37 (brs, 2H), 2.96 (t, J = 6.9 Hz, 2H);
LCMS-ESI (m/z): 480 [M+H+].
Compound 222: 1H-NMR (300 MHz, CDCl3): d 8.42 (s, H), 7.39-7.49
(m, 12H), 6.95-7.17 (d, 2H), 4.71-4.74 (t, H), 4.64-4.67 (t, H), 3.66-3.71 (q,
2H), 3.24-3.29 (q, 2H), 2.72-2.75 (t, 2H), 1.47-1.54 (m, 2H), 1.30-1.40 (m,
2H), 0.90-0.93 (t, 3H).
Compound 223: 1HNMR (CDCl3): d 8.31 (s, 1H), 7.43-7.26 (m, 9H),
7.18 (d,y= 8.4 Hz, 2H), 7.06-7.04 (m, 2H), 6.88 (s, 1H), 6.85-6.83 (m, 1H),
3.83 (t, J= 6.3 Hz, 2H), 3.38 (brs, 2H), 2.96 (t, J= 6.3 Hz, 2H); LCMS-ESI
(m/z): 466 [M+H+].
Compound 224: 1H NMR (CDCl3): d 8.31 (s, 1H), 8.01( d, J= 5.7 Hz,
2H), 7.39-7.18 (m, 9H), 7.00-6.93 (m, 2H), 6.95 (s, 1H), 6.86-6.85 (m, 1H),
4.04 (t, J= 5.7 Hz, 2H), 3.66 (t,J= 6.3 Hz, 2H), 2.80 (t,J= 6.3 Hz, 2H), 2.72
(t,J= 5.7 Hz, 2H), 2.34 (s, 6H); LCMS-ESI (m/z): 537 [M+H4"].
Compound 225: 1HNMR (300 MHz, d6-DMSO) 8 8.69 (s, 1H), 8.66
(s, 1H), 8.31 (s, 1H), 7:93 (t, J= 6.6 Hz, 1H), 7.64-7.38 (m, 9H), 7.28-7.18
(m, 4H), 6.94 (d, J= 7.2 Hz, 1H), 6.29 (t, J= 5.1 Hz, 1H), 4.77 (d, J= 5.1 Hz,
2H), 3.73 (td, J = 6.6,6.6 Hz, 2H), 2.85 (t,J= 6.6 Hz, 2H); LC-MS (ESI) m/z
480.2 (M + H).
Compound 226: 1H NMR (400 MHz, d6-DMSO) d 8.64 (s, 1H), 8.61
(s, 1H), 7.51 (t, J= 7.6 Hz, 2H), 7.44-7.38 (m, 5H), 7.26 (t, J= 7.6 Hz, 2H),
7.17 (d, J= 8.4 Hz, 2H), 7.11 (t, J= 6.4 Hz, 1H), 6.94 (t, J= 7.6 Hz, 1H), 3.70
(td, J = 6.4, 6.4 Hz, 2H), 2.87 (t, J= 6.4 Hz, 2H), 2.52 (s, 3H); LC-MS (ESI)
m/z 464.2 (M + H).
Compound 227: 1HNMR (DMSO-d6): d 8.71 (s, 1H), 8.01-7.91 (m,
4H), 7.33-7.24 (m, 6H), 7.15-6.99 (m, 4H), 6.45 (t, 1H), 3.67 (t,2H, /=6.9 Hz),
3.16 (q,2H, J=6.0 Hz), 3.08-2.94 (m, 2H), 2.83 (t, 2H, J =6.0 Hz), 1.84 (t,
1H, J=6.6Hz).
Compound 228: 1H NMR (400 MHz, d6-DMSO): d 8.36 (s, 1H),
7.92-7.98 (m, 5H), 7.70 (dd, 2H), 7.47-7.57 (m, 6H), 7.23-7.28 (m, 3H), 3.76
(dt, 2H), 2.92 (t, 2H); LC-MS (ESI) m/z 469.7 (M+H).
Compound 229: 1H NMR (400 MHz, d6-DMSO): d 10.19 (s, 1H), 8.28
(s, 1H), 8.12 (bra, 1H), 7.93 (d, 2H), 7.78 (d, 2H), 7.69 (d, 2H), 7.37-7.57 (m,
7H), 7.25 (d, 2H), 3.72 (dt, 2H), 2.91 (t, 2H).
Compound 230: LC-MS (ESI) m/z 579.0 (M + H).
Compound 231: LC-MS (ESI) m/z 451.2 (M + H).
Compound 232: 1H-NMR (300 MHz, CDCl3): d 8.37 (s, H), 8.16-
8.17(d, 2H), 8.00-8.02 (d, 2H), 7.20-7.50 (m, 9H), 3.85-3.90 (q, 2H), 2.96-
2.99 (t, 2H).
Compound 233: 1H-NMR (300 MHz, CDCl3): d 8.35 (s, H), 7.28-7.45
(m, 9H), 6.88 (s, H), 3.82-3.85(1, 2H), 3.35-3.38 (t, 2H), 2.93-2.96 (t, 2H),
2.57-2.60 (t, 2H), 2.30 (s, 6H).
Compound 234: LC-MS (ESI) m/z 479.2 (M + H).
Compound 235: 1HNMR(CDCl3): d 8.31 (s, 1H), 7.80 (d, J= 6.3 Hz,
1H), 7.74 (d, J= 9.3 Hz, 2H), 7.43-7.27 (m, 6H), 7.16 (d, J= 8.7 Hz, 2H),
7.08-7.01(m, 1H), 6.98 (d,J= 8.7 Hz, 2H), 6.78 (s, 1H), 4.28 (t, J= 6.0 Hz,
2H), 3.86-3.80 (m, 4H), 2.95 (t, J= 6.6 Hz, 2H); LCMS-ESI (m/z): 529
[M+H+].
Compound 236: 1HNMR (CDCl3): d 8.26 (s, 1H), 7.73 (d, J = 8.7 Hz,
2H), 7.45-7.41 (m, 2H), 7.36 (d, J = 8.7 Hz, 2H), 7.32-7.26 (m, 3H), 7.17 (d, J
= 8.4 Hz, 2H), 7.04-7.01 (m, 1H), 6.97 (d, J= 9.0 Hz, 2H), 6.88 (s, 1H), 4.41-
4.20 (m, 4H), 3.80 (t, J = 6.9 Hz, 2H), 3.45-3.36 (m, 3H), 3.05 (d, J= 11.4
Hz, 2H), 2.95 (t, J= 6.9 Hz, 2H), 2.84 (d, J= 5.7 Hz. 2H), 2.17 (t, J= 12.0
Hz, 2H), 1.78 (d,J= 11.4 Hz, 2H); LCMS-ESI (m/z): 607 [M+H+].
Compound 237: 1H NMR (CDCl3): d 8.26 (s, 1H), 7.73 (d, J= 9.0 Hz,
2H), 7.45-7.26 (m, 7H), 7.19 (d, J = 8.4 Hz, 2H), 7.05-7.02 (m, 1H), 6.96 (d, J
= 9.0 Hz, 2H), 6.89 (s, 1H), 4.08 (t, J= 6.0 Hz, 2H), 3.83-3.78 (m, 4H), 3.46-
3.35 (m, 3H), 3.18 (d, J= 12.0 Hz, 2H), 2.96 (t, J= 6.9 Hz, 2H), 2.75 (t, J=
7.8 Hz. 2H), 2.27-2.20 (m,2H), 2.11 (t,J= 12.0 Hz, 2H), 1.78(d, J= 13.5 Hz,
2H); LCMS-ESI (m/z): 621 [M+H+].
Compound 238: LC-MS (ESI) m/z 530.0 (M + H).
Compound 239: 1H NMR (CDCl3): d 8.29 (s, 1H), 7.70 (d, J= 9.3 Hz,
2H), 7.44-7.26 (m, 7H), 7.13 (d,J= 8.4 Hz, 2H), 7.05-7.00 (m, 1H), 6.94 (d, J
= 8.7 Hz, 2H), 6.77 (s, 1H), 4.14 (t, J = 5.7 Hz, 2H), 3.81-3.78 (m, 4H), 3.41-
3.39 (m, 1H), 3.23-3.17 (m, 2H), 2.95-2.92 (m, 2H), 2.85 (t, J= 5.7 Hz, 2H),
1.99-1.90 (m, 2H), 1.44-1.37 (m, 2H); LCMS-ESI (m/z): 593 [M+H+].
Compound 240: 1H NMR (CDCl3): d 8.28 (s, 1H), 7.70 (d, J= 7.2 Hz,
2H), 7.44-7.25 (m, 7H), 7.15 (d, J= 8.4 Hz, 2H), 7.05-7.02 (m, 1H), 6.93 (d, J
= 9.0 Hz, 2H), 6.79 (s, 1H), 4.03 (t,J = 6.0 Hz, 2H), 3.78 (d, J= 6.9 Hz, 2H),
3.68-3.62 (m, 2H), 3.42-3.37 (m, 1H), 2.92 (t, J= 6.6 Hz, 2H), 2.86-2.82 (m,
2H), 2.54 (t, J= 7.5 Hz. 2H), 2.19-2.13 (m, 2H), 2.05-1.90 (m, 4H); LCMS-
ESI (m/z): 607 [M+HT].
Compound 241: 1H NMR(CDCl3): d 8.28 (s, 1H), 7.70 (d, J= 7.2 Hz,
2H), 7.45-7.26 (m, 7H), 7.14 (d, J = 8.4 Hz, 2H), 7.04-7.00 (m, 1H), 6.94 (d, J
= 9.0 Hz, 2H), 6.80 (s, 1H), 4.06 (t, J = 6.0 Hz, 2H), 3.79 (d, J= 6.6 Hz, 2H),
3.64 (dd,J= 11.1, 4.2 Hz, 1H), 3.48 (dd, J= 11.1, 3.6 Hz, 1H), 3.40-3.37 (m, 1H), 2.93 (t, J= 6.6 Hz, 2H), 2.70-2.33 (m, 4H), 2.10-1.74 (m, 6H); LCMS-
ESI (m/z): 607 [M+H+].
Compound 242: 1H NMR (CDCl3): d 8.28 (s, 1H), 7.70 (d, J= 7.2 Hz,
2H), 7.44-7.26 (m, 7H), 7.14 (d, J = 8.4 Hz, 2H), 7.06-7.03 (m, 1H), 6.94 (d, J
= 9.0 Hz, 2H), 6.79 (s, 1H), 4.06 (t, J= 6.0 Hz, 2H), 3.79 (d, J= 6.3 Hz, 2H),
3.47-3.40 (m, 4H), 2.93 (t, J= 6.6 Hz, 2H), 2.56 (d, J= 7.2 Hz, 2H), 2.46-2.43
(m, 4H), 2.02-1.98 (m, 2H), 1.46 (s, 9H); LCMS-ESI (m/z): 692 [M+H+].
Compound 243: 1H NMR (400 MHz, d6-DMSO) d 8.61 (s, 1H), 8.58
(s, 1H), 8.40 (s, 1H), 8.26 (brs, 1H), 8.17 (d, J= 7.6 Hz, 2H), 7.63-7.53 (m,
3H), 7.44-7.42 (m, 2H), 7.37 (t,J= 8.4 Hz, 2H), 7.28-7.24 (m, 2H), 7.18 (d, J
= 8.4 Hz, 2H), 6.96-6.92 (m, 1H), 3.71 (brs,2H), 2.89 (t, J= 7.2 Hz, 2H); LC-
MS (ESI) m/z 530.1 (M +2 + H), 528.1 (M + H).
Compound 244: 1H NMR (CDCl3): d 8.34 (s, 1H), 7.95 (d, J= 8.7 Hz,
2H), 7.43-7.39 (m, 4H), 7.28 (d, J= 8.4 Hz, 2H), 7.11 (d, J= 8.4 Hz, 2H),
7.07-7.03 (m, 1H), 7.00 (d, J= 8.7 Hz, 2H), 3.85 (t, J= 6.6 Hz, 2H), 3.39 (brs,
2H), 2.96 (t, J= 6.6 Hz, 2H); LCMS-ESI (m/z): 514 [M+H+].
Compound 245: 1H NMR (CDCl3): d 8.56 (s, 1H), 8.25 (s, 1H), 8.00
(brs), 7.73 (d, J= 9.0 Hz, 2H), 7.37 (d, J= 8.4 Hz, 2H), 7.18 (d, J= 8.4 Hz,
3H), 7.07 (d, J= 9.0 Hz, 2H), 3.81 (s, 3H), 3.69 (t, J= 6.9 Hz, 2H), 2.87 (t, J=
6.9 Hz, 2H); LCMS-ESI (m/z): 537 [M+H+].
Compound 246: 1H NMR (CDCl3): d 8.56 (s, 1H), 8.25 (s, 1H), 8.00
(brs), 7.73 (d, J = 9.0 Hz, 2H), 7.37 (d, J= 8.4 Hz, 2H), 7.18 (d, J= 8.4 Hz,
3H), 7.07 (d, J= 9.0 Hz, 2H), 3.81 (s, 3H), 3.69 (t, J= 6.9 Hz, 2H), 2.87 (t, J=
6.9 Hz, 2H); LCMS-ESI (m/z): 481 [M+H+].
Compound 247: LC-MS (ESI) m/z 551.0 (M + H).
Compound 248: LC-MS (ESI) m/z 458.2 (M + H).
Compound 249: 1H NMR (400 MHz, d6-DMSO) d 8.62 (s, 1H), 8.59
(s, 1H), 8.33 (s, 1H), 8.13-8.10 (m, 2H), 7.54-7.50 (m, 2H), 7.45-7.38 (m, 5H),
7.28-7.18 (m, 4H), 7.07 (t,J= 6.0 Hz, 1H), 6.97-6.92 (m, 1H), 5.36 (t, J= 6.0
Hz, 1H), 3.75 (td, J= 6.0, 6.0 Hz, 2H), 2.86 (t,J= 6.0 Hz, 2H), 2.73 (t, J= 6.0
Hz, 2H); LC-MS (ESI) m/z 518.4 (M + H).
Compound 250: 1H NMR (400 MHz, CDCl3) d 8.37 (s, 1H), 7.70-7.68
(m, 2H), 7.43-7.35 (m, 14H), 7.10 (d, J = 8.4 Hz, 2H), 7.04 (t, J= 7.6 Hz, 1H),
6.34 (d, J= 4.0 Hz, 1H), 6.33 (d, J= 4.0 Hz, 1H), 4.40 (s, 2H), 3.84 (t, J = 6.4
Hz, 2H), 2.90 (t, J= 6.4 Hz, 2H); LC-MS (ESI) m/z 546.2 (M + H).
Compound 251: 1H NMR (400 MHz, d6-DMSO) d 8.69 (s, 1H), 8.66
(s, 1H), 8.30 (s, 1H), 7.68 (d, J= 8.0 Hz, 2H), 7.51 (t, J= 8.0 Hz, 2H), 7.44 (d,
J= 8.0 Hz, 2H), 7.48-7.37 (m, 3H), 7.26 (t,J= 8.0 Hz, 2H), 7.17 (d,J= 8.0
Hz, 2H), 6.96-6.92 (m, 2H), 4.61 (t, J= 6.0 Hz, 1H), 3.74 (td, J= 6.4,6.4 Hz,
2H), 3.43 (td, J = 6.0, 6.0 Hz, 2H), 2.92 (t, J = 6.4 Hz, 2H), 2.88 (t, J= 6.0 Hz,
2H), 1.65-1.48 (m, 4H); LC-MS (ESI) m/z 522.3 (M + H).
Compound 252: 1H NMR (400 MHz, CD3OD): d 8.26 (s, 1H), 8.03 (d,
1H), 7.96 (s, 2H), 7.32-7.48 (m, 8H), 7.19-7.26 (m, 2H), 6.95 (d, 2H), 3.81 (t,
1H), 3.44 (s, 2H), 2.24 (s, 6H); LC-MS (ESI) m/z 541.3 (M + H).
Compound 253: 1H NMR (400 MHz, CDCl3): d 8.37 (s, 1H), 8.01 (dt,
2H), 7.40-7.50 (m, 7H), 7.29 (s, 2H), 7.27 (s, 1H), 7.23 (d, 2H), 7.19 (s, 1H),
5,97 (dt, 1H), 3.85 (td, 2H), 3.57 (s, 2H), 2.96 (t, 2H), 2.36 (s, 6H); LC-MS
(ESI) m/z 541.3 (M + H).
Compound 254: LC-MS (ESI) m/z 409.0 (M + H).
Compound 255: LC-MS (ESI) m/z 457.0 (M + H).
Compound 256: LC-MS (ESI) m/z 491.2 (M + H).
Compound 257: LC-MS (ESI) m/z 540.0 (M + H).
Example 184: Co-crystallization of a fused bicyclic pyrimidine compound and
Aurora kinase
Expression and Purification of Aurora A: Aurora A catalytic
domain (residues 123-401) with one mutation at residue 288 (T288D) and six
His as the tag at the N-terminus was cloned into the pET-28a vector and
expressed in BL21 DE3 E. coli. The protein was then purified by nickel
column following the procedures as suggested by the suppliers (Amersham
Biosciences, Piscataway, NJ). The bound protein was washed with 10% of
Tuffer solution (40 mmol HEPES (pH 7.5), 50 mmol NaCl and 500 mmol
imidazole) and eluted with 100% of buffer solution. The fractions containing
Aurora A catalytic domain was then treated with TEV protease (Invitrogen)
overnight at 4 °C to remove the His tag and concentrated to 8 mg/mL in a
buffer containing 40 mmol HEPES pH 7.5, 50 mmol NaCl, 1 mmol DTT.
Crystallization and Structure Determination: The hanging drop
method was used to obtain the crystals of Aurora A in complex with test
compounds. A drop of 1.5 1 protein pre-incubated with a test compound for
half hour on ice was mixed with the equal volume of reservoir solution (22%
PEG400 and 0.1 mmol ammonia sulfate). The crystals were grown at 18 °C
for 3-7 days. Before being flash-frozen in liquid nitrogen, the crystal was
immersed briefly in a cryoprotectant containing 37% PEG400. Diffraction
data were collected on beamline SP12B2 at the SPring-8 (Japan) and
beamlines, BL13B1 and BL13C1, at the NSRRC (Taiwan). The data were
processed by DENZO (see Otwinowski, Z.; Minor, W. Processing of x-ray
diffraction data collected in oscillation mode. Methods in Enzymology 1997,
276, 307-326) and reduced with SCALEPACK. The structure was solved by
molecular replacement in MOLREP (see Vagin A , T. A. MOLREP: an
automated program for molecular replacement. J. Appl. Cryst. 1997, 30, 1022-
1025) using the published Aurora A structure (PDB code: 1MQ4) as the
search model. The refinement calculation were performed by REFMAC5 (see
Murshudov GN, V. A., Dodson EJ. Refinement of macromolecular structures
by the maximum-likelihood method. Acta Crystallogr 1997, D, 240-255) and
model building was carried out with the program O9.0 (see Jones TA, Z. J.,
Cowan SW, Kjeldgaard. Improved methods for building protein models in
electron density maps and the location of errors in these models. Acta
Crystallogr 1991, A, 110-119).
Compounds 6, 202, and 206 were each co-crystallized with Aurora A.
Each of the compound-Aurara A complex structures was solved by x-ray
crystallography.
Example 185: Inhibiting Aurora A activity
Aurora kinase A protein purification: The GST-tAurora A (123-
401 aa) fusion protein was produced by baculovirus expression system. The
Aurora A catalytic domain with an N-terminal GST tag was constructed in
pBacPAK8 plasmid and expressed in sf9 cells. Recombinant baculovirus
infected sf9 cells were harvested by centrifugation, and the pellets were
resuspended in PBS buffer (PBS, pH 7.3, 0.2 mM PMSF, 0.5 mM Na3VO4,
0.5 mM EDTA, 2 mM DTT, Complete Protease Inhibitor Cocktail table
(1125700, Roche). Cells were lysed by sonication, and lysates were cleared
by centrifugation at 15,000 rpm for 30 min. The supematants were loaded
into 1 ml of GST Sepharose 4 Fast Flow (17-5132-01, GE healthcare) column
previously washed with PBS buffer. The column were washed with 30
volumes of PBS buffer, and then eluted by elution buffer (50 mM Tris (pH
8.0), 10 mM glutathione). To concentrate GST-tAurora A, buffer was
replaced with Tris buffer (100 mM Tris (pH 7.5), 300 mM NaCl, 1 mM
EDTA, 4 mM DTT) using Amicon ultra-15 (MWCO:30K, Millipore) to 2.4
mg/ml. After the addition of equal volume of glycerol and 0.04% Triton X-
100, the proteins were stored aliquoted at -80°C.
Aurora Kinase A luminescent kinase assay: The inhibitory activity
of the compounds of this invention against Aurora kinase was assessed using
-GST-tAufora~A~TT23-40TaaJ fusion protein obtaified^above, according ta~a~
modified method described in Koresawa, M.; Okabe, T. Assay Drug Dev
Technol 2004, 2,153. Briefly, a test compound, enzyme, substrate-
tetra(LRRWSLG), DTT and ATP were dissolved in Aur buffer (50 mM Tris-
HC1 pH 7.4, 10 mM NaCl, 10 mM MgCl2, and 100 µg/ml BSA) individually
before the assay. Test compounds were consecutively diluted from 10 mM
stock (for single dose: compounds were diluted from 10 mM stock to 100 uM
and
20 µM; for IC50: 5x serial dilution was made from 100 µM to 0.16 µM) in Aur
buffer. Diluted compounds (25 µl) were pre-incubated with purified 105 ng
(10 ul) of GST-tAurora A (123-401aa) fusion protein at 25°C for 15 min into
96 well U-bottomed plates (268152, NUNC). 5 µM ATP (5 µl), 1 mM DTT (5
µl) and 0.1 mM tetra(LRRWSLG) peptide substrate (5 µl) were added into the
reactions of test compounds and GST-tAurora A. The reactions were
incubated at 37°C for 90 min. 50 µl of Kinase-Glo Plus Reagent (V3771,
Promega) was added into the reactions, followed by the incubation at 25°C for
20 min. 70 µl of reaction solutions were transferred to 96 well black plates
(237108, NUNC) to quantify the ATP remaining in the solutions, which
inversely relates to kinase activity. The luminescence was recorded by vector2
(V-1420 multilabel HTS counter, Perkin Elmer).
Compounds 1-98, 100, 107, 115, 118, 119, 122-124, 126, 146-148,
151, 152, 160,161, 163, 164,171-173, 175, 176, and 196-257 were tested in
this assay. Unexpectedly, Compounds 1, 3-10, 13-24, 26-32, 34, 40-42, 45,
52,56-82,91-98, 100,107,115,118, 119, 122-124, 126,146-148, 151, 160,
161, 163, 164, 171-173,176, 196-242, 244, 245, and 247-256 showed IC50
values (i.e., the concentration of a test compound at which activity of 50% of
Aurora A is inhibited) lower than 1 µM. Among them, Compounds 5, 8-10,
13-15, 17-21, 23,27-32,41, 42, 45, 52, 56, 57, 59, 61-63, 66, 67, 70, 71, 73,
76-80, 82, 91,96-98,119,123,146, 147, 161, 163, 171, 172, 196, 198, 199,
201-212, 214, 217-226, 230, 232, 235-237, 239-242, 244, 247, 249, 250,253,
254, and 256 showed IC50 values between 45 nM and 400 nM; and
Compounds 6, 16, 24, 58, 60,251, 252, and 255 showed IC50 values between
0.001 nM and 45 nM.
Example 186: In vitro anticancer activity
HCT-116 cell viability was examined by the MTS assay (Promega,
Madison, WI, USA). 2000 HCT-116 cells in 100 nL McCoy's 5a medium
were seeded in each well of a 96-well plate. After 96-h incubation with a test
compound, the cells were incubated with 20 µL of a MTS/PMS mixture
(MTS/PMS ratio: 20:1) for 2 h at 37 °C in a humidified incubator with 5%
CO2 to allow viable cells to convert the tetrazolium salt (MTS) into formazan.
The amount/concentration of formazan, which indicates the number of live
cells, was determined by measuring the absorbance at 490 nm using a
PerkinElmer Victor2 plate reader (PerkinElmer, Shelton, CT, USA).
Compounds 6, 10, 13-16, 19-21, 23, 24, 27-33, 35, 36, 38-42, 57, 58,
60, 61, 79, 80, 82, 91-98,100, 107, 115, 118, 119, 122-124, 126, 146-148,
151, 152, 160, 161,163, 164, 171-173, 175, 176, and 196-257 were tested in
this assay. Unexpectedly, Compounds 6, 14, 23, 24, 42, 57, 58, 60, 61, 79, 80,
82,92,93,96, 115, 123, 147, 148, 171, 172, 176, 196,202,204,207,211-215,
217-226, 230, 232, 235-237, 239-241, 244, 245, and 247-256 showed IC50
values (i.e., the concentration of a test compound which causes 50% of the cell
death) between 100 nM and 900 nM; and Compounds 205, 206,209, and 210
showed IC50 values lower than 100 nM.
Example 187: In vivo anticancer activity
In vivo efficacy of the compounds of this invention was assessed using
colon tumor xenograft mice (injected with HCT-116), as described in Cancer
Research 2004, 64,4621-4628.
HCT-116 cells were grown as subcutaneous tumors in nude mice.
When well-established HCT-116 xenografts were palpable with tumor size of
~100 mm , mice were randomly assigned to three groups: a vehicle control
group (10 mice), a positive control group (10 mice), and a treatment group (21
mice). Of the treated mice, ten received Compound 209 at a daily dosage of 5
mg/kg and eleven received the same compound at a daily dosage of 15 mg/kg
of via IV injection through the tail veins for 5 days/week for 2 consecutive
weeks (days 1-5 and 8-12). The positive control mice received VX-680 (a
known anti-cancer compound) at a daily dosage of 50mg/kg also via IV
injection through the tail veins for 5 days/week for 2 consecutive weeks (days
1-5 and 8-12).
At the dosage of 5 mg/kg, Compound 209 suppressed tumor growth
insignificantly while at a higher dosage, 15 mg/kg, Compound 209,
unexpectedly showed inhibition of tumor growth comparable to that of VX-
680 at a dosage of 50 mg/kg, indicating potent in vivo anti-cancer activity.
More specifically, the treated mice on average had a tumor size of 381 mm3 on
the fourth day and 654 mm3 on the eleventh day, while the vehicle control
mice on average had a tumor size 567 mm on the fourth day and 1254 mm3
on the eleventh day.
All of the features disclosed in this specification may be combined in
any combination. Each feature disclosed in this specification may be replaced
by an alternative feature serving the same, equivalent, or similar purpose.
Thus, unless expressly stated otherwise, each feature disclosed is only an
example of a generic series of equivalent or similar features.
From the above description, one skilled in the art can easily ascertain
the essential characteristics of the present invention, and without departing
from the spirit and scope
thereof, can make various changes and modifications of the invention to adapt
it to various usages and conditions. Thus, other embodiments are also within
the scope of the following claims.
We Claim:
1. A compound of formula (1):

wherein
one of the two === bonds is a single bond and the other is a double
bond;
X1 is O or NRa and X2 is CR2, or X1 is CR2 and X2 is O or NRa, in
which Ra is H, alkyl, alkenyl, alkynyl, aryl, or heteroaryl;
each of Y and Z, independendy, is O, S, or NRb, in which Rb is H,
alkyl, alkenyl, alkynyl, aryl, heteroaryl, cycloalkyl, cycloalkenyl,
heterocycloalkyl, heterocycloalkenyl, cyano, or NO2;
each of R1 and R2, independently, is H, alkyl, alkenyl, alkynyl, aryl,
heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl, heterocycloalkenyl,
halo, cyano, nitro, ORc, OC(O)Rc, C(O)ORc, C(O)NRcRd, NRcRd,
NHC(O)Rc, NHC(O)NRcRd, NHC(S)Rc, NHC(O)ORc, SO3Rc, or SO2NRcRd,
in which each of Rc and Rd, independently, is H, alkyl, alkenyl, alkynyl, aryl,
heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl, or heterocycloalkenyl;
or R1 and R2, together with the carbon atoms to which they are bonded, are
cycloalkenyl, heterocycloalkenyl, aryl, or heteroaryl;
each of R3 and R4, independently, is H, halo, nitro, cyano, amino,
hydroxy, alkoxy, aryloxy, alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
heterocycloalkyl, aryl, or heteroaryl;
A is arylene or heteroarylcne;
B is O, S or NRc, in which Rc, is H, alkyl, alkenyl, or alkynyl;
C is O, S, alkylene, or NRf, in which Rf is H, alkyl, alkenyl, or alkynyl;
or B and C, together with the carbon atom to which they are bonded, are
heterocycloalkyl or heterocycloalkenyl;
D is H, alkyl, alkenyl, alkynyl, aryl, heteroaryl, cycloalkyl,
cycloalkenyl, heterocycloalkyl, or heterocycloalkenyl; or C and D together are
heterocycloalkyl, heterocycloalkenyl, aryl or heteroaryl; and
n is 0, 1, 2, 3, or 4.
2. The compound of claim 1, wherein X1 is O or NH and X2 is CR2.
3. The compound of claim 2, wherein R1 is H, alkyl, alkynyl, aryl, or
heteroaryl.
4. The compound of claim 3, wherein Z is O and each of B and C is
NH.
5. The compound of claim 4, wherein R1 is phenyl optionally
substituted with hydroxy or alkoxy.
6. The compound of claim 5, wherein R2 is H, alkyl, alkynyl, halo,
aryl, or heteroaryl.
7. The compound of claim 6, wherein Y is NH and n is 2.
8. The compound of claim 7, wherein A is phenyl; D is alkyl, aryl,
heteroaryl, or cycloalkyl; and each of R3 and R4 is H.
9. The compound of claim 1, wherein R1 is H, alkyl, alkynyl, aryl, or
heteroaryl.
10. The compound of claim 9, wherein R1 is phenyl optionally
substituted with hydroxy or alkoxy.
11. The compound of claim 10, wherein R2 is H, alkyl, alkynyl, halo,
aryl, or heteroaryl.
12. The compound of claim 11, wherein R2 is H, halo, or phenyl
optionally substituted with hydroxy, alkoxy, or acylamino.
13. The compound of claim 1, wherein Z is O and each of B and C is
NH.
14. The compound of claim 13, wherein R1 is phenyl optionally
substituted with hydroxy or alkoxy.
15. The compound of claim 14, wherein R2 is H, halo, or phenyl
optionally substituted with hydroxy, alkoxy, or acylamino.
16. The compound of claim 1, wherein X1 is CR2 and X2 is O or NH.
17. The compound of claim 1, wherein R1 and R2, together with the
carbon atoms to which they are bonded, are cycloalkenyl, heterocycloalkenyl,
aryl, or heteroaryl.
18. A compound of formula (1):

wherein
one of the two === bonds is a single bond and the other is a double
bond;
X1 is S and X2 is CR2, or X1 is CR2 and X2 is S;
each of Y and Z, independently, is O, S, or NRb, in which Rb is H,
alkyl, alkenyl, alkynyl, atyl, heteroaryl, cycloalkyl, cycloalkenyl,
heterocycloalkyl, heterocycloalkenyl, or cyano;
each of R1 and R2, independently, is alkynyl, aryl, heteroaryl, NRcRd,
NHC(O)Rc, NHC(O)NRcRd, or NHC(S)Rc, in which each of Rc and Rd,
independently, is H, alkyl, alkenyl, alkynyl, aryl, heteroaryl, cycloalkyl,
cycloalkenyl, heterocycloalkyl, or heterocycloalkenyl; or R1 and R2, together
with the carbon atoms to which they are bonded, are cycloalkenyl,
heterocycloalkenyl, aryl, or heteroaryl;
each of R3 and R4, independently, is H, halo, nitro, cyano, amino,
hydroxy, alkoxy, aryloxy, alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
heterocycloalkyl, aryl, or heteroaryl;
A is arylene or heteroarylene;
B is O, S or NRc, in which Rc is H, alkyl, alkenyl, or alkynyl;
C is O, S, alkylene, or NRf, in which Rf is H, alkyl, alkenyl, or alkynyl;
or B and C, together with the carbon atom to which they are bonded, are
heterocycloalkyl or heterocycloalkenyl;
D is H, alkyl, alkenyl, alkynyl, aryl, heteroaryl, cycloalkyl,
cycloalkenyl, heterocycloalkyl, or heterocycloalkenyl; or C and D together are
heterocycloalkyl, heterocycloalkenyl, aryl, or heteroaryl; and
n is 0, 1, 2, 3, or 4,
19. The compound of claim 18, wherein X[ is S and X2 is CR2.
20. The compound of claim 19, wherein R! and R2, together with the
carbon atoms to which they are bonded, are cycloalkenyl, heterocycloalkenyl,
aryl, or heteroaryl.
21. The compound of claim 20, wherein Z is O and each of B and C is
NH.
22. The compound of claim 21, wherein Y is NH and n is 2.
23. The compound of claim 22, wherein A is phenyl; D is alkyl, aryl,
heteroaryl, or cycloalkyl; and each of R3 and R4 is H.
24. The compound of claim 23, wherein R1 and R2, together with the
carbon atoms to which they are bonded, are cyclohexenyl.
25. The compound of claim 19, wherein Z is O and each of B and C is
NH.
26. The compound of claim 25, wherein one of R1 and R2 is alkynyl
optionally substituted with alkyl, alkylamino, or amido, and the other is aryl or
heteroaryl.
27. The compound of claim 1, wherein the compound is one of
Compounds 6, 24, 58, 79, 82, 206, 209, 256, and 258.
28. The compound of claim 18, wherein the compound is Compound
42.
29. A method for inhibiting the activity of a protein kinase, comprising
contacting a cell expressing the protein Kinase with an effective amount of a
compound of claim 1.
30. The method of claim 29, wherein the protein kinase is Aurora
kinase.
31. A method for inhibiting the activity of a protein kinase, comprising
contacting a cell expressing the protein kinase with an effective amount of a
compound of claim 18.
32. The method of claim 31, wherein the protein kinase is Aurora
kinase.
33. A method for treating a protein kinase-mediated disease,
comprising administering to a subject in need thereof an effective amount of a
compound of claim 1.
34. The method of claim 33, wherein the protein kinase-mediated
disease is cancer.
35. A method for treating a protein kinase-mediated disease,
comprising administering to a subject in need thereof an effective amount of a
compound of claim 18.
36. The method of claim 35, wherein the protein kinase-mediated
disease is cancer.
37. A pharmaceutical composition, comprising a compound of claim 1
and a pharmaceutically acceptable carrier.
38. A pharmaceutical composition, comprising a compound of claim
18 and a pharmaceutically acceptable carrier.

Fused bicyclic pyrimidine compounds of formula (I) defined herein. Also disclosed are a
method for inhibiting Aurora kinase activity and a method for treating cancer with these
compounds.

Documents:

http://ipindiaonline.gov.in/patentsearch/GrantedSearch/viewdoc.aspx?id=yggjrM1L1697svG2E47kCA==&loc=wDBSZCsAt7zoiVrqcFJsRw==


Patent Number 279196
Indian Patent Application Number 4182/KOLNP/2010
PG Journal Number 03/2017
Publication Date 20-Jan-2017
Grant Date 13-Jan-2017
Date of Filing 08-Nov-2010
Name of Patentee NATIONAL HEALTH RESEARCH INSTITUTES
Applicant Address NO.35,KEYAN ROAD ZHUNAN TOWN, MIAOLI COUNTY,350 TAIWAN
Inventors:
# Inventor's Name Inventor's Address
1 HSIEH, HSING-PANG 4F.,NO.21,ALLEY 16,LANE 32 GUANG-FU SOUTH ROAD TAIPEI 105, TAIWAN
2 COUMAR, MOHANE, SELVARAj #239, 9TH CROSS DR. RADHAKRISHNAN NAGAR TEACHER'S COLONY PONDICHERRY 605 010, INDIA
3 HSU, TSU-AN 3RD FLOOR, #11-1 ALLEY 4, LANE 97MING-SHENG EAST ROAD, SECTION 4 TAIPEI 105, TAIWAN
4 WU, SU-YING NO. 7, LANE 301, DATONG RD. TOUFEN TOWN MIAOLI COUNTY 35150, TAIWAN
5 CHAO, YU-SHENG 28 DRINKING BROOK ROAD MONMOUTH JUCTION NEW JERSEY 08852 UNITED STATES OF AMERICA
PCT International Classification Number A01N 43/54, A61K 31/505
PCT International Application Number PCT/US2009//041382
PCT International Filing date 2009-04-22
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 61/049,063 2008-04-30 U.S.A.