Title of Invention

NOVEL ROOT KNOT NEMATODE RESISTANCE GENE AND APPLICATION THEREOF

Abstract An excellent Meloidogyne-resistance gene and a method of using this gene. Namely, a novel Meloidogyne-resistance gene having qualitative resistance which shows no high-temperature sensitivity and is widely applicable to various species and strains of Meloidogyne; and Meloidogyne-resistant recombinant plants carrying the gene transferred thereinto (FIG. - NIL)
Full Text DESCRIPTION
NOVEL ROOT-KNOT NEMATODE-RESISTANCE GENE AND
APPLICATION THEREOF
Technical Field
The present invention relates to a novel root-knot nematode-resistance gene.
More particularly, the present invention relates to a novel root-knot nematode-resistance
gene that is unaffected by high temperature and is applicable to and quantitatively
resistant to a wide variety of root-knot nematode species and strains. Further, the
present invention relates to a method for using such gene.
Background Art
Nematodes are animal species that constitute a large phylum and are a type of
harmful organisms parasitizing plants or animals. In general, root-knot nematodes
parasitizing plants are 1 mm or shorter in length. However, they absorb nourishment
from plant cell cytoplasms, and the damage caused thereby represents as much as
approximately one billion dollars per year worldwide. Up to the present, approximately
70 species of root-knot nematodes belonging to the genus Meloidogyne have been
identified. Since they parasitize all types of crops and a wide variety of weeds, they are
reported to adversely affect over 2,000 plant species, including sweet potatoes, tomatoes,
and Irish potatoes.
When a plant is infected with root-knot nematodes, no distinctive symptom that
would be effective for determining parasitism at the initial stage is observed in the aerial
part; however, a gall or knot begins to form below the ground. The size of such gall or
knot varies depending on the species or variety thereof, and is approximately 1 to 2 mm
in many cases. Thus, such gall or knot is sometimes difficult to visually observe,
although egg masses laid on the surface of the gall or knot or on roots can be visually
observed. The most significant symptom is a vertical crack appearing on the root or

tuber, and nematodes at various developmental stages parasitize the infected, root or
tuber. Root-knot nematode infection not only lowers crop yields but also drastically
reduces or eliminates the market value of the infected root or tuber. Also, a crack
created on a root or tuber allows other pathogenic organisms to easily attack the plant,
which in turn increases the likelihood of complex infection (Hooker, W. J., Compendium
of Potato Diseases, pp. 97-98, 1981, The American Phytopathological Society, St. Paul
Minnesota, U.S.A.; Jansson & Raman, Sweet Potato Pest Management, pp. 1-12, 1991,
Westview Press, Boulder, Colorado, U.S.A.; Jones et al., Compendium of Tomato
Diseases, pp. 49-50, 1991, APS PRESS, St. Paul, Minnesota, U.S.A.).
Nematodes of the genus Meloidogyne parasitizing potatoes are of the following
four species: Meloidogyne (M.) arenaria Chitwood; M. incognita Chitwood; M. hapla
Chitwood; and M. javanica Chitwood. Among them, the Meloidogyne incognita
nematode is generated with the highest frequency in potato fields worldwide (Hooker, W.
J., Compendium of Potato Diseases, pp. 97-98, 1981, The American Phytopathological
Society, St. Paul, Minnesota, U.S.A.). Nematode infection is observed in potato
cultivating areas in Kyushu, Japan, where the weather is warm. Accordingly,
conferment of resistance upon crops or development of integrated pest control
techniques is desired.
In the case of potatoes, root-knot nematodes have been controlled for a long time
via crop rotation. This technique is effective in terms of reduction of the population
density of nematodes; however, control of root-knot nematodes simply via crop rotation
is difficult in the case of omnivorous root-knot nematodes due to limitations concerning
the cycle of crop rotation. Alternatively, the population density of root-knot nematodes
can be restricted with the aid of ammonia nitrogen by adding organic fertilizers. This
technique is still employed in Africa, Asia, and Central and South America at present,
although it is not an ultimate method of control of root-knot nematodes. Soil
fumigation with dichloropropene, methyl bromide, or the like is the best technique in
terms of speed of action. This technique, however, adversely affects the ecosystem and
farmers.
Currently, a technique for enhancing the nematode resistance of host potatoes
has been experimentally carried out, and a variety of resistant lines have been created
(Watanabe et al., Amer. Potato J. 71: 599-604, 1994; Watanabe et al., Breeding Science
45: 341-347, 1995; Watanabe et al., Breeding Science 46: 329-336, 1996; Watanabe et al.
Breeding Science 49: 53-61, 1999; Watanabe & Watanabe, Plant Biotechnology 17: 1-16,
2000). Tetraploid potato cultivars that are highly resistant to nematodes, particularly to
Meloidogyne incognita, have not yet been created.
Conferment of resistance using root-knot nematode-resistant diploid wild
relatives upon cultivated potatoes has been attempted. Based on genetic analysis of
phenotypes or breeding experiments, diploid wild relatives have been found to comprise
root-knot nematode-resistance genes (Rmi), and these genes have been found to have
quantitative resistance with additive effects (Iwanaga et al., J. Amer. J. Hort Sci., 114
(6): 1008-1113, 1989; Watanabe et al., Breeding Sci., 46: 323-369, 1996; Watanabe et
al., Breeding Sci., 49: 53-61, 1999). In the aforementioned literature, resistance
induced by such Rmi genes is reported to be unaffected by temperature and to be active
at high temperatures. The Rmi is, however, not yet isolated, and the sequence thereof
is not yet known. Since cultivated potatoes are autotetraploids, the heredity patterns
thereof are complicated. Thus, the breeding of a useful resistant variety has not yet
been realized.
At present, the positions of a group of genes resistant to the genus Meloidogyne
on several gene maps have only been verified regarding tomatoes and potatoes. In the
case of tomatoes, for example, the Lycopersicon. peruvianum-derived Mi gene resistant
to Meloidogyne incognita Chitwood, Meloidogyne javanica Chitwood, and Meloidogyne
arenaria Chitwood is reported to be located on chromosome 6 (Messeguer et al., Theor.
Appl. Genet., 82: 529-536, 1991; Ho et al., Plant J., 2: 971-982, 1992). The L.
peruvianum-derived Mi3 gene resistant to Meloidogyne incognita Chitwood and
Meloidogyne javanica Chitwood is also reported to be located on chromosome 12
(Yaghoobi et al., Theor. Appl. Genet., 91: 457-464, 1995). The Mi gene was isolated
by the group of Williamson et al., and the constitution thereof has been elucidated (Rossi

et al., Proc Natl Acad. Sci, 95: 9750-9754, 1998; Milligan et al.5 Plant Cell, 10:
1307-1319, 1998). Since the Mi gene is affected by high temperature, the resistance
thereof becomes disadvantageously inactive upon exposure to high temperatures during
the initial stage of infection, i.e., 24 to 48 hours after infection.
In the case of potatoes, Rmcl resistant to the Meloidogyne chitwoodi race 1 is
reported to be located on chromosome 11 of 5". bulbocastanum (Brown et al., Theor Appl.
Genet., 92: 572-576, 1996). Concerning transmission of resistance to Meloidogyne
incognita Chitwood, the following two possibilities have been pointed out: 1) two or
more genes may be involved with resistance (Gomez et al., Amer. Potato J., 60: 353-360,
1983); and 2) cytoplasm may be involved with development of resistance (Gomez et al.,
Amer. Potato J., 60: 353-360, 1983; Iwanaga et al., J. Amer. Hort. Sci., 114: 1108-1013.
1989). Further, resistance to Meloidogyne incognita Chitwood is found to be additive
and quantitative resistance that is controlled by 5 or 6 resistance genes (Watanabe et al.,
Breed. Sci., 9: 53-61, 1999; Watanabe et al. submitted).
In general, potent resistance of plants to pathogens is often very highly specific.
The "gene-for-gene" hypothesis proposed by Flor (Flor, Ann. Rev. Phytopathol., 9:
275-296, 1971) describes such highly specific resistance based on the interaction
between resistance genes of plants and avirulence genes of pathogens. It is generally
hypothesized that a ligand-receptor model is a mechanism for gene-for-gene molecule
recognition (Gabriel & Rolfe, Ann. Rev. Phytopathol. 28: 365-391, 1990).
Up to the present, the isolated resistance genes are classified into 5 groups based
on functional or structural similarities of gene products (Baker et al., Science, 276: 726,
1997; Bergelson et al., Science 292: 2281-2285, 2001; Dangl and Jones, Nature 411:
826-833, 2001). The resistance genes classified as class I have nucleotide-binding sites
(NBS) and leucine-rich repeats (LRR), and it is deduced that these regions are involved
with signal transduction for developing resistance. Examples of the isolated genes
classified as class I include: the N gene of tobacco resistant to tobacco mosaic virus
(Whitham et al., Cell, 78: 1101-1105, 1994); the L6 (Lawrence et al., Plant Cell, 7:
1195-1206, 1995) and M (Anderson et al., Plant Cell, 9: 641-651, 1997) genes of flax

resistant to Melampsora lini; the RPP5 (Bent, Plant Cell, 8: 1757-1771, 1996) gene of
Arabidopsis thaliana resistant to Peronospora parasitica, the RPS2 (Bent et ah, Science
265: 1856-1860, 1993; Mindrinos et al., Cell, 78: 1089-1099, 1994) and the RPM1
(Grant et al., Science, 269; 843-846, 1995) genes thereof resistant to Pseudomonas
syringae; and the PRF (Salmeron et al., Cell 86: 123-133, 1996) gene of tomatoes
resistant to Pseudomonas syringae and the I2C-1 (Ori et al., Plant Cell 9: 521-531, 1997)
gene thereof resistant to Fusarium oxysporum. Further, the aforementioned L.
peruvianum-derived Mi gene of tomatoes resistant to root-knot-nematodes is also found
to have NBS and LRR (Milligan et al., Plant Cell 10: 1307-1319, 1998).
A protein belonging to class I has incomplete LRR on its C-terminal side and
NBS on its N-terminal side. NBS is observed in ATPase, GTPase, and the like, and is
constituted by 3 motifs including a P loop (Traut, Eur J. Biochem., 229: 9-19, 1994). In
general, the first kinase 1 a domain forms a phosphoric acid-binding loop, and the kinase
2 domain is located downstream thereof. Aspartic acid immobilized in the kinase 2
domain is deduced to adjust a metal-binding site that is necessary for migration of
phosphoric acid. The kinase 3a domain located further downstream thereof has
tyrosine or arginine that often interacts with purine in ATP (Traut, Eur J. Biochem., 229:
9-19, 1994). Existence of such NBS indicates that kinase activity or the G-protein
plays a key role in activating resistance (Hammond-Kosack & Jones, 1997, Annu. Rev.
Plant Phusiol. Plany Mol. Bioi., 48: 575-607, 1997).
The LRR domain is observed in a variety of proteins, and it is considered to be
often involved with protein-protein interactions in yeast, Drosophila, human, or other
species (Kobe & Deisenhofer, Nature, 366: 751-756, 1993). Concerning plant
resistance to pests, however, it is deduced that the LRR domain functions as a
ligand-binding domain produced from avirulence (Avr) genes or facilitates interactions
between the products of resistant (R) genes and other proteins involved with defense
signal transduction (Bent, Plant Cell, 8: 1757-1771, 1996).
Potatoes are major crops worldwide, and they are excellent crops that are
compatible with a wide range of production systems from high-input agriculture

conducted in developed countries such as the U.S.A. and Japan to low-input agriculture
conducted in developing countries in Africa, Asia, and Latin America. Potatoes are
extensively cultivated for applications such as feeds, industrial starch, and fermentation
material as well as for food such as staple food, vegetables, or snacks worldwide (Harris,
P.M. The Potato Crop, Chapman and Hall, London, 1978; International Potato Center
http://www.cgiar.org.cip/ 2004). From the viewpoint of the amount of production and
calorie supply, potatoes are one of the most important crops particularly in developing
countries. In these countries where the populations are drastically increasing, an
increased amount of production and productivity of potatoes will be further expected for
this valuable food source in years to come.
A large amount of potatoes produced have been lost due to pests, and damage
caused by root-knot nematodes has been particularly serious in extensive areas covering
tropical, subtropical, and temperate regions (Hooker, W. J., Compendium of Potato
Diseases, pp. 97-98, 1981, The American Phytopathological Society, St. Paul Minnesota,
U.S.A.).
Unfortunately, there is no ultimate solution for the damage caused by root-knot
nematodes, and thus, elucidation of functions and structures of resistance genes has been
awaited.
Disclosure of the Invention
An object of the present invention is to provide a solution for serious damage
caused by root-knot nematodes by discovering an excellent root-knot
nematode-resistance gene that is extensively applicable to a variety of root-knot
nematode species.
The present inventors have screened diploid potato lines based on nucleotide
sequences such as NBS or LRR that are common among a group of plants" resistance
genes. As a result, they have succeeded in isolating a novel gene having excellent
root-knot nematode resistance. They have also succeeded in producing excellent
root-knot nematode-resistant transgenic plants via utilization of the aforementioned gene,
thereby completing the present invention.
Specifically, the present invention relates to the following (1) to (8).
(1) A gene consisting of the following DNA (a) or (b):
(a) DNA consisting of the nucleotide sequence as shown in SEQ ID NO:
1; or
(b) DNA hybridizing under stringent conditions to DNA consisting of a
nucleotide sequence complementary with the DNA consisting of the nucleotide
sequence as shown in SEQ ID NO: 1 and conferring root-knot nematode
resistance upon a host.
(2) The gene according to (1), wherein the root-knot nematode resistance is
quantitative resistance where the level of resistance increases depending on the number
of gene copies.
(3) A recombinant vector comprising the gene according to (1).
(4) A transformant obtained by introducing the gene according to (1) into a host.
(5) The transformant according to (4), wherein the host is a plant.
(6) The transformant according to (5), wherein the plant is of the Solanaceae
family.
(7) A method for producing a root-knot nematode-resistant transgenic plant by
introducing the gene according to (1) into the plant.
(8) An agent for root-knot nematode control comprising the gene according to
(1).
1. Novel root-knot nematode-resistance gene
(1) Characteristics of the gene according to the present invention
The gene according to the present invention is a novel root-knot
nematode-resistance gene isolated from a diploid potato Line. This gene differs from
conventional root-knot nematode-resistance genes in the following respects:
(i) unlike a single dominant root-knot nematode-resistance gene such as a
resistance gene of a tomato (the Mi gene), the gene according to the present invention
has "quantitative resistance" where the degree of resistance is enhanced in accordance
with the number of gene copies;
(ii) unlike the resistance gene of a tomato, resistance breakdown does not occur
because of high-temperature sensitivity; and
(iii) the gene according to the present invention can be extensively applied to a
wide variety of root-knot nematode species and strains.
(2) Isolation of the gene according to the present invention
The gene according to the present invention can be screened from genomic DNA
or a cDNA library of the diploid potato genotype 85.37.38 that is known to have a
root-knot nematode-resistance gene (Watanabe et al., Amer. Potato J. 71: 599-604, 1994)
based on sequence information such as NBS or LRR that is common among a group of
plants" resistance genes. For example, primers may be designed from a domain
conserved in known plants" genes resistant to pests, such as a NBS or LRR sequence,
based on the general theory of Hammond-Kosack and Jones (Ann. Rev. Plant Physiol.
Plan Mol. Biol. 48: 575-607, 1997) or the like. These primers may be used to amplify
the gene of interest isolated from the aforementioned cDNA library of the diploid potato
line.
(3) Nucleotide sequencing
The nucleotide sequence of the obtained gene can be determined in accordance
with a conventional technique. Nucleotide sequencing may be carried out by a
conventional technique, such as chemical modification developed by Maxam & Gilbert,
dideoxynucleotide chain termination utilizing an M13 phage, or a method utilizing an
automated nucleotide sequence analyzer (e.g., ABI PRISM 377 DNA Sequence System,
Perkin-Elmer).

In order to allow a foreign gene to express in a host, a promoter and a terminator
need to be located in front of and behind the gene, respectively. Any promoter and
terminator can be used without particular limitation as long as they can function in a host.
When a plant is a host, examples of a promoter sequence include cauliflower mosaic
virus (CaMV)-derived 35S transcript (The EMBO J. 6: 3901-3907, 1987), maize
ubiquitin (Plant Mol. Biol. 18: 675-689, 1992), nopaline synthase (NOS) gene, and
octopine (OCT) synthase gene promoters. Examples of a terminator sequence include
cauliflower mosaic virus-derived and nopaline synthase gene-derived terminators.
In order to more effectively select the transformant of interest, an effective
selection marker gene is preferably introduced. Examples of the selection marker gene
include a kanamycin-resistance-conferring gene, a hygrornycin phosphotransferase (htp)
gene conferring antibiotic hygromycin-resistance upon a plant, and a phosphinothricin
acetyltransferase (bar) gene conferring bialaphos resistance upon a plant. Such
selection marker gene and the gene according to the present invention may be
incorporated together into a single vector. Alternatively, 2 types of recombinant DNAs
independently comprising them in separate vectors may be used.
3. Transformant
The present invention also provides a transformant into which the gene
according to the present invention has been introduced. This transformant is produced
by transforming a host by using the aforementioned vector according to the present
invention. The host is not particularly limited as long as the gene according to the
present invention can function therein. It is preferably a plant, and examples thereof
include a plant of the Solanaceae family, a plant of the Convolvulaceae family such as
sweet potato, and a plant of the Brassicaceae family including root crops such as radish.
The gene according to the present invention is considered to be capable of effectively
functioning in over 2,000 species of plants. Plants of the Solanaceae family, such as
potatoes, tobacco, and tomatoes are particularly preferable. The term "plant" used in
the present invention refers to cultured cells of plants cultivated plants, plant organs

(e.g., leaves, flower petals, stems, roots, rhizomes, or seeds), or plant tissues (e.g.,
epidermis, phloem, parenchyma, xylem, or fibrovascular bundle). When cultured cells
of plants, the entirety of the plants, plant organs, or plant tissues are used as hosts, for
example, the gene according to the present invention is introduced into a piece of the
obtained plant via the Agrobacterium binary vector method, the particle gun method, the
polyethylene glycol method, or other method. Thus, a transformant of interest can be
obtained. Alternatively, the gene may be introduced into protoplast via electroporation
to prepare a transformant.
The transformant into which the gene according to the present invention has
been introduced can be selected via screening using a selection marker or analysis of the
functions of the gene according to the present invention, i.e., root-knot nematode
resistance. The resulting transformant, particularly a transgenic plant, can be
propagated by cultivation in a pot filled with soil or vermiculite and by cutting. The
thus propagated transgenic plants and all the offspring thereof are within the scope of the
transformant according to the present invention as long as they comprise the gene
according to the present invention.
4. Root-knot nematode-resistant transgenic plant
The transgenic plant into which the root-knot nematode-resistance gene
according to the present invention has been introduced has potent resistance to a wide
variety of root-knot nematode species. In addition, resistance conferred by the gene
according to the present invention is "quantitative resistance," where the degree of
resistance is enhanced in accordance with the number of genes introduced. It should be
noted that conventional root-knot nematode-resistance genes do not have quantitative
resistance. Accordingly, the gene according to the present invention can produce a
transgenic plant having more potent root-knot nematode resistance by increasing the
number of genes to be introduced.
Root-knot nematode-resistance genes that have been identified up to the present
are affected by temperature and lose their resistance upon exposure to a temperature over

a given level (the Mi gene is usually deactivated at 28°C). The transgenic plant according
to the present to the present invention, however, can maintain its resistance to root-knot
nematodes even when it is cultivated at high temperatures between 33°C and 35°C.
Accordingly, the transgenic plant into which the gene according to the present invention
has been introduced can maintain its root-knot nematode resistance in temperate or
tropical regions, where temperature is relatively high.
Thus, the present invention can provide a novel root-knot nematode-resistant transgenic
plant and a method for producing the same.
5. Others
The gene according to the present invention confers excellent root-knot nematode
resistance upon a host, particularly to plants of the Solanaceae family, such as potatoes,
tobacco, and tomatoes. Accordingly, such gene and a composition comprising the same
can be used as an agent for root-knot nematode control. The gene according to the present
invention, a transgenic plant into which such gene has been introduced, and an agent for
root-knot nematode control comprising such gene have important effects of containing
the damage and improving the productivity of crops in regions where serious damage is
caused by root-knot nematodes.
Brief Description of the accompanying Drawings
Fig. 1 shows the results of gene introduction confirmed via Southern hybridization.
Fig. 2 shows .the resultant of gene introduction confirmed via RT-PCR, wherein 2A
represents the primer RKN, and 2B represents the primers Start 2x2 and PotalLRR.
Fig. 3 is a photograph showing the conditions of the roots 42 days after root-know
nematode infection, wherein 3A represents a transgenic plant, 3B represents a control,
and 3C represents TA209.

Fig. 4 is a photomicrograph (x40) showing the roots 42 days after root-knot
nematode infection, wherein 4A represents a transgenic plant, and 4B represents a
control.
This description includes part or all of the contents as disclosed in the
description of Japanese Patent Application No. 2002-089622, which is a priority
document of the present application.
Best Modes for Carrying out the Invention
The present invention is hereafter described in more detail with reference to the
following examples, although the technical scope of the present invention is not limited
thereto.
[Example 1] Isolation of gene domain
The following primers were designed from genomic DNA of the diploid potato
genotype 85.37.38 known to have resistance genes (Watanabe et al., Amer. Potato J. 71:
599-604, 1994), and the gene was isolated by PCR. The primers were designed from a
domain conserved in known plants" genes resistant to pests, such as the sequence NBS or
LRR.
Forward: 5"-GATCCATTCTATAATGTCTCACT-3" (SEQ ID NO: 2)
Reverse: 5"-CTATCTATAAGATCTTTAATCA-3" (SEQ ID NO: 3)
The isolated Rmi gene candidate was designated as "Fragment #93," arid the
total sequence thereof (SEQ ID NO: 1) and homology thereof with known genes were
inspected (Table 1).

A foreign gene was inserted between border sequences of the binary vector, and
the resulting recombinant vector was amplified in E. coli. Subsequently, the amplified
recombinant vector was introduced into, for example, Agrobacterium tumefaciens
LBA4404, EHA101, EHA105, or C58ClRifR, via freeze thawing, electroporation, or
other means. The resultant was used for producing a transgenic plant.
[Example 2] Construction of vector
(1) Insertion into binary vector
The isolated Rmi gene candidate (Fragment #93) was cleaved with BamHI,
ligated to the pTarget vector once, cleaved with BamHl again, and then ligated to a
binary vector pBE2113Not. The resulting recombinant vector was introduced into E.
coli DH5oc and amplified therein to obtain a vector for Agrobacterium introduction
(PotatoRKN: pBE2113NotI).
(2) Electroporation
The binary vector (PotatoRKN: pBE2113NotI) was introduced into the
Agrobacterium tumefaciens LB4404 strain (Gibco BRL) via electroporation.
Specifically, the Agrobacterium tumefaciens LB4404 strain stored at -80°C was thawed
on ice, and approximately 20 µ1 thereof was transferred to a 1.5-ml Eppendorf tube
under clean bench conditions. DNA (100 ng/µl, 1 µl) was added thereto, the mixture
was allowed to stand on ice, and the resultant was then transferred to a cuvette for
electroporation.
(3) Confirmation of gene introduction
Subsequently, 50 (J.1 of YM medium was added, suctioned, and transferred to a
15-ml Falcon tube. YM medium was further added to bring the total amount to 1 ml,
and shaking culture was carried out at 225 ppm and 30°C for 3 hours. Three hours
thereafter, 200 µl of the culture product was spread on kanamycin-containing YM agar
medium, culture was carried out at 30°C for 48 to 56 hours, and the generated colony
was subjected to PCR and DNA sequencing to confirm gene introduction.
(4) Colony PCR
The colony of the Agrobacterium tumefaciens LBA4404 strain, gene
introduction into which had been verified, was removed, and colony PCR was conducted
using the reaction solution having the composition as shown in Table 2. The resulting
PCR product (1 µ1) was removed and then mixed with a small amount of blue juice.
The mixture was then electrophoresed in a gel comprising 2% of agarose dissolved in
0.5% TAE. A A. Hind III marker (Marker II, Boehringer Mannheim) was used.
Thereafter, a solution having the composition as shown in Table 2 was poured into

8-strip tubes, and the tubes were mounted on the PCR apparatus (GeneAmp 9600,
Perkin-Elmer).
The above reaction solution was transferred to a 1.5-ml Locking Tube, and 80 \xl
of 75% isopropanol was added thereto, followed by mixing. The resulting mixture was
then allowed to stand at room temperature for 15 minutes and centrifuged for 20 minutes
(at room temperature and the maximal rate). The supernatant was removed therefrom,
and 250 µl of 75% isopropanol was further added, followed by mixing. Thereafter, the
mixture was centrifuged for 5 minutes (at room temperature and the maximal rate), the
supernatant was removed, and the centrifugation product was dehydrated in a draft
chamber. Subsequently, 25 µ1 each of the template suppression reagent (TSR) was
added and mixed, the mixture was spun down, and heat shock was applied in a Heat
Block at 95°C for 3 minutes. The resultant was allowed to stand on ice and then
transferred to a DNA sequencing 310-specific tube. DNA sequencing was then carried
out.
The colony of the Agrobacterium tumefaciens LB 4404 strain, gene introduction
into which had been verified, was removed, and the colony was subjected to shaking
culture in YEB medium containing 100 mg/1 of kanamycin at 30°C and 225 rpm
overnight. The solution of cultured cells (850 jjlI each) was poured into cryotubes on
ice, 150 \x\ of glycerin was added, the tubes were sealed and wrapped with Parafilm, and

the contents of the tubes were mixed using a vortex mixer. The resultant was wrapped
in plastic wrap and then immersed in 99.5% ethanol, which had been cooled to -20°C,
and then allowed to cool in a freezer at -20°C for approximately 10 minutes. Thereafter,
the resultant was stored in a storage case which had been cooled to -80°C.
[Example 3] Production of transgenic plant
A transgenic plant into which a domain of the root-knot nematode-resistance
gene has been introduced using the vector prepared in Example 2 was produced.
Diploid Nicotiana benthamiana (a plant of the Solanaceae family), which is
redifferentiated and grown at the early stage and is nematode-sensitive, was used as a
host plant. In parallel therewith, the gene was introduced into the nematode-sensitive
tetraploid potato variety, Desiree.
(1) Infection of plant with Agrobacterium tumefaciens
The Agrobacterium tumefaciens LB4404 strain prepared in Example 2 was
allowed to thaw on ice. YEB medium (40 ml) was transferred to 50-ml Falcon tubes
under clean bench conditions, and antibiotics were added thereto, followed by mixing in
the reverse order. The resulting mixture was poured into the tubes in amounts of 10 ml
per tube. The Agrobacterium tumefaciens LBA4404 strain (10 µ1) was added thereto,
the resultant was cultured in a shake culture apparatus overnight (at 28°C and 225 rpm),
and the absorbance of the culture solution at 600 nm was assayed using a
spectrophotometer. Since the absorbance at this time was approximately 2, the culture
solution was diluted with the aid of YEB medium to bring the absorbance to a level
between 0.6 and 0.8.
A plant 2 to 3 weeks after subculturing was marked with a surgical scalpel on
sterilized filter paper, divided into the root, stem, and leaf portions, and then immersed
in sterilized water to prevent drying. The marked plant fragment was immersed in a
solution of Agrobacterium tumefaciens adjusted to have absorbance between 0.6 and 0.8
for 7 minutes, transferred onto sterilized filter paper, thoroughly drained, and then
cultured in a co-culture medium for 3 days. The co-culture medium used herein

contained 1 mg/1 of benzyladenine (BA), 35 mg/1 of trans-zeatin riboside, and 0.1 mg/1
of indoleacetic acid.
(2) Subculturing to co-culture medium
As with the case of the section above, a co-culture medium was prepared, 20 ml
thereof was poured into each petri dish, sterilized round filter paper was placed thereon,
and the infected plant was transferred thereto, followed by culturing for 3 days.
(3) Subculturing to callus-forming medium
A callus-forming medium was prepared by adding 1 mg/1 of benzyladenine, 0.1
mg/1 of NAA, 150 mg/1 of kanamycin, and 200 mg/1 of carbenicillin to the modified MS

medium as shown in Table 3. The prepared medium was poured into petri dishes in
amounts of 20 ml per dish. The plant fragments that had been cultured in a symbiotic
medium for 3 days were successively subcultured in the aforementioned callus-forming
medium.
(4) Subculturing to shoot-growing medium
A shoot-growing medium was prepared by adding 150 mg/1 of kanamycin and
200 mg/1 of carbenicillin to the modified MS medium as shown in Table 3, and the
prepared medium was poured into petri dishes in amounts of 20 ml per dish. The plant
fragments that had been cultured in callus-forming medium for approximately 2 weeks
where a callus had been formed were successively subcultured in the aforementioned
shoot-growing medium. Culture was then carried out in a room lit by light (fluorescent
light) all day long.
(5) Subculturing to MS medium-containing test tubes
The modified MS medium as shown in Table 3 was poured into test tubes in
amounts of 5 ml per tube, and the tubes were sterilized in an autoclave. Among the
plants that had been redifferentiated in a shoot-growing medium, the plants that had
become completely independent were subcultured as a single line in the sterilized test
tubes.
(6) Subculturing to rooting medium
Kanamycin (75 mg/1) and 100 mg/1 of carbenicillin were added to the modified
MS medium as shown in Table 3, and the resultant was poured into culture bottles in
amounts of 40 ml per bottle to prepare a rooting medium. Plants that had reached a size
of 2 to 3 cm after 1 to 2 weeks of culture in the MS medium-containing test tubes were
successively subcultured in the aforementioned rooting medium in quantities of
approximately 3 plants per bottle.

(7) Conditioning
Commercially available vegetable soil was placed in a planter, culture was
carried out in a rooting medium for approximately 3 weeks, and plants, the roots of
which had matured, were transferred thereto and grown therein.
[Example 4] Confirmation of gene introduction via Southern hybridization
The regenerated plants were grown in a selection medium, i.e., a
kanamycin-containing medium, and rooting-based growth was employed as an indicator
to select a line with good growing conditions as a provisional candidate for the
transgenic plant. This candidate for the transgenic plant was subjected to Southern
hybridization to confirm gene introduction.
(1) Testing method
DNA of the aforementioned provisional candidate line for the transgenic plant
was extracted, and PCR was carried out using primers (SEQ ID NOs: 2 and 3) used in
Example 1 to amplify a domain of the root-knot nematode-resistance gene.
The line, introduction of a gene domain into which had been verified via PCR,
was subjected to Southern hybridization using the sequence of Rmi (SEQ ID NO: 1)
determined in Example 1 as a probe, and the number of genes introduced was estimated.
The hybridization conditions are shown in Table 4.

According to the results shown in Fig. 1, positive reactions were also observed
in the control. These positive reactions were considered to occur because the control
gene had a homologous domain which hybridizes to a non-transgenic plant. Therefore,
plants having bands with conditions different from those of the control and having a
larger number of bands than the control were determined to be plants into which genes
have been introduced.
[Example 5] Confirmation of gene introduction via RT-PCR
(1) Testing method
1) Synthesis of cDNA
Plants were ground to powder using liquid nitrogen in a mortar and mRNA was
extracted in accordance with a conventional technique. Reverse transcription of the
mRNA was conducted using the reaction composition as shown in Table 5 and primers
prepared by adding dT to random 9 mer and Ml3 primer M4 attached to the Takara RNA
PCR Kit (Takara) to synthesize cDNA. The primers used and the reaction conditions
are as shown below.

Random 9 mer: dp(5"-NNNNNNNNN-3")
Reaction conditions: preincubation at 30°C for 10 minutes;
a cycle of 42°C for 30 minutes, 99°C for 5 minutes, and 55°C for 5 minutes

Primers prepared by adding Oligo-dT to the oligo-dT adaptor: Ml3 primer M4
5"-gttttcccagtcacgac-3" (SEQ ID NO: 4) was used.
Reaction conditions: a cycle of 42°C for 30 minutes, 99°C for 5 minutes, and
55°C for 5 minutes
2)PCR
Subsequently, PCR was carried out using the obtained cDNA. PCR was
carried out using the GeneAmp 9600 (Applied Biosystems) and the primers shown below
(RKN, Start2x2., and PotaLRR) under the following conditions.

Primer RKN-F1: GTTGGTCATGAAAATGAA (SEQ ID NO: 5)
Primer RKN-R1: ATATTGCTCTTCCAATCA (SEQ ID NO: 6)
Reaction condition: 30 cycles of 95°C for 10 minutes, 95°C for 1 minute, 55°C for 2
minutes, and 72°C for 3 minutes
Final elongation at 72°C for 10 minutes

Primer Start2X2: ATGGCTTATGCTGCTATTACTTGT (SEQ ID NO: 7)
Primer PotaLRR: CTAACTGATACAGACCTCAACAGA (SEQ ID NO: 8)
Reaction condition: 30 cycles of 95°C for 10 minutes, 95°C for 1 minute, 55°C for 2
minutes, and 72°C for 3 minutes
Final elongation at 72°C for 10 minutes
3) Electrophoresis
The PCR products obtained above were electrophoresed, and band differences
thereamong were compared to evaluate the occurrence of gene introduction.
(2) Results
The results of RT-PCR are shown in Fig. 2. When the primer RKN and the
primers Start2x2 and PotaLRR were used, no band was observed in the control, although
a band was detected in the candidates for the transgenic plant (plants 8 and 9). Thus,
gene introduction to and transcription in the transgenic plants were confirmed.
[Example 6] Evaluation of resistance of transgenic plants
(1) Testing method
The transgenic Nicotiana benthamiana (e.g., Nos. 1, 8, 14, and 18), gene
introduction into which had been verified, the non-transgenic Nicotiana benthamiana,
and the nematode-sensitive tomato variety TA209 were infected with Meloidogyne
incognita. Conditions of aerial parts and roots of the plants were observed visually and
microscopically.

The transgenic Nicotiana benthamiana (e.g., Nos. 1, 8, 14, and 18), gene
introduction into which had been verified, the non-transgenic Nicotiana benthamiana,
and TA209 were cultivated in Meloidogyne incognita-infected soil to evaluate resistance.
Evaluation was carried out in accordance with a conventional technique (Williamson et
al., Plant Cell, 1998), root-knot nematode eggs were stained with Erioglaucine
(Sigma-Aldrich), and the presence or absence and the number of eggs were examined to
evaluate the resistance. At this time, the presence of galls in the roots was also
examined. Thus, the correlation between the number of genes introduced and the
nematode resistance was inspected.
(2) Results
Concerning the conditions of the aerial parts of the transgenic plants, the degree
of etiolation was not advanced from that of the non-transgenic plant and that of TA209.
The number of root-knots was also smaller. The roots were further observed under a
microscope, and knot-like deformation was not observed in the root of the transgenic
plant. However, knot-like deformation was observed in the root of the non-transgenic
plant and in that of TA209, and a shadow that seemed like nematode egg was observed
therein. Thus, a transgenic plant into which the gene according to the present invention
has been introduced was verified to have high root-knot nematode resistance (Figs. 3 and
4).
Further, the transgenic plant according to the present invention could maintain
its root-knot nematode resistance even when it was cultured and cultivated at high
temperatures between 33°C and 35°C. Accordingly, the gene according to the present
invention was confirmed to be unaffected by high temperature unlike the-Mi-gene (which
is deactivated at 28°C).
[Example 7] Evaluation of root-knot nematode resistance of wild-type tobacco
(1) Testing method

The nematode-resistant genes were introduced into wild-type tobacco using the
vector prepared in Example 2 in accordance with the method described in Example 3.
The lines into which the genes have been introduced were subjected to Southern
hybridization and RT-PCR to confirm the gene introduction. Further, transgenic plants
were planted in root-knot nematode-infected soil and allowed to grow in a greenhouse at
30°C to 35°C during the day (for 16 hours) and at 25°C to 30°C during the night (for 8
hours) for 6 weeks. The nematode resistance thereof was then evaluated. Resistance
was evaluated by first observing the roots in terms of root knots and then
microscopically observing the plants that did not have root knots. The results are
shown in Table 8.
(2) Results
As is apparent from Table 8, the root-knot nematode-resistance gene according
to the present invention was confirmed to have quantitative resistance unlike
conventional root-knot nematode-resistance genes such as the mi gene of a tomato.

[Example 8] Evaluation of root-knot nematode resistance of cultivated potato species
(1) Testing method
The nematode-resistant genes were introduced into the cultivated potato species
(Desiree) using the vector prepared in Example 2 in accordance with the method
described in Example 3. The species into which the genes have been introduced were
subjected to Southern hybridization, PCR, and RT-PCR to confirm the gene introduction.
Further, transgenic plants were planted in root-knot nematode-infected soil and allowed
to grow in a greenhouse at 30°C to 35°C during the day (for 16 hours) and at 25°C to
30°C during the night (for 8 hours) for 6 weeks. The nematode resistance thereof was
then evaluated in the same manner as in Example 7. As controls, untreated Desiree,
root-knot nematode-sensitive Atzimba (potato), TA209, and N. benthamiana were
allowed to grow in the same manner and then evaluated. The results are shown in
Table 9.
(2) Results
As is apparent from Table 9, the root-knot nematode-resistance gene according
to the present invention was confirmed to exhibit quantitative resistance in the cultivated
potato species.
All publications, patents, and patent applications cited herein are incorporated
herein by reference in their entirety.
Industrial Applicability
The present invention provides a novel root-knot nematode-resistance gene that
is unaffected by high temperature and is extensively applicable to and quantitatively
resistant to a wide variety of root-knot nematode species and strains. Utilization of
such gene enables conferment of high root-knot nematode resistance upon major crops,
such as potatoes, tomatoes, and tobacco.
Free Text of Sequence Listings
SEQ ID NO: 2: Description of artificial sequence: primer
SEQ ID NO: 3: Description of artificial sequence: primer
SEQ ID NO: 4: Description of artificial sequence: primer
SEQ ID NO: 5: Description of artificial sequence: primer
SEQ ID NO: 6: Description of artificial sequence: primer
SEQ ID NO: 7: Description of artificial sequence: primer
SEQ ID NO: 8: Description of artificial sequence: primer

We Claim:
1. An isolated gene consisting of the following DNA (a) or (b):
(a) DNA consisting of the nucleotide sequence as shown in SEQ
ID NO: l;or
(b)DNA hybridizing under stringent conditions to DNA consisting
of a nucleotide sequence complementary with the DNA
consisting of the nucleotide sequence as shown in SEQ ID NO:
I and conferring root-knot nematode resistance upon a host,
wherein the stringent condition means those conditions in
which a sodium concentration is between 10 mM and 300mM
and temperature is between 25°C and 70°C.
2. The gene as claimed in claim 1, wherein the root-knot nematode
resistance is quantitative resistance where the level of resistance
increases depending on the number of gene copies.
3. A recombinant vector comprising the gene as claimed in claim 1.
4. A transformant obtained by introducing the gene as claimed in
claim 1 into a host.
5. The transformant as claimed in claim 4, wherein the host is a plant.

6. The transformant as claimed in claim 5, wherein the plant is of the
Solanaceae family.
7. A method of enhancing root-knot nematode resistant of a plant by
introducing the gene as claimed in claim 1 into the plant.
8. An agent for root-knot nematode control comprising the gene as
claimed in claim 1.
An isolated gene consisting of the following DNA (a) or (b): DNA
consisting of the nucleotide sequence as shown in SEQ ID NO: 1; or
DNA hybridizing under stringent conditions to DNA consisting of a
nucleotide sequence complementary with the DNA consisting of the
nucleotide sequence as shown in SEQ ID NO: 1 and conferring root-knot
nematode resistance upon a host, wherein the stringent condition means
those conditions in which a sodium concentration is between 10 mM and
300mM and temperature is between 25°C and 70°C.

Documents:

1519-kolnp-2004-granted-abstract.pdf

1519-kolnp-2004-granted-claims.pdf

1519-kolnp-2004-granted-correspondence.pdf

1519-kolnp-2004-granted-description (complete).pdf

1519-kolnp-2004-granted-drawings.pdf

1519-kolnp-2004-granted-form 1.pdf

1519-kolnp-2004-granted-form 18.pdf

1519-kolnp-2004-granted-form 2.pdf

1519-kolnp-2004-granted-form 26.pdf

1519-kolnp-2004-granted-form 3.pdf

1519-kolnp-2004-granted-form 5.pdf

1519-kolnp-2004-granted-letter patent.pdf

1519-kolnp-2004-granted-reply to examination report.pdf

1519-kolnp-2004-granted-specification.pdf

1519-kolnp-2004-granted-translated copy of priority document.pdf


Patent Number 218538
Indian Patent Application Number 01519/KOLNP/2004
PG Journal Number 14/2008
Publication Date 04-Apr-2008
Grant Date 02-Apr-2008
Date of Filing 11-Oct-2004
Name of Patentee UNIVERSITY OF TSUKUBA
Applicant Address 1-1-1, TENNODAI, TSUKUBA-SHI IBARAKI 305 8577 JAPAN
Inventors:
# Inventor's Name Inventor's Address
1 WATANABE KAZUO AND WATANABE JUNKO 1-4-7, TOYOSATONODAI, TSUKUBA-SHI, IBARAKI 305 8577 JAPAN
PCT International Classification Number B61C
PCT International Application Number PCT/JP02/12392
PCT International Filing date 2002-11-27
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 2002-089622 2003-03-27 Japan